RNA–Protein interactions for RNA: ENST00000588423.1

RETREG3-206, Transcript of reticulophagy regulator family member 3, humanhuman

TSL 4

Gene RETREG3, Length 559 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-206ENST00000588423 CPS1P31327 1500 aa23.9■■□□□ 1.42
RETREG3-206ENST00000588423 ILDR1Q86SU0 546 aaPredicted RBP23.9■■□□□ 1.42
RETREG3-206ENST00000588423 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.9■■□□□ 1.42
RETREG3-206ENST00000588423 MPHOSPH9Q99550 1183 aa23.9■■□□□ 1.42
RETREG3-206ENST00000588423 CLTCL1P53675 1640 aa23.89■■□□□ 1.42
RETREG3-206ENST00000588423 HRCP23327 699 aa23.89■■□□□ 1.41
RETREG3-206ENST00000588423 PLEKHG1Q9ULL1 1385 aa23.88■■□□□ 1.41
RETREG3-206ENST00000588423 PPP1R15AO75807 674 aaPredicted RBP23.84■■□□□ 1.41
RETREG3-206ENST00000588423 FOXD1Q16676 465 aa23.81■■□□□ 1.4
RETREG3-206ENST00000588423 KIF1BO60333 1816 aa23.8■■□□□ 1.4
RETREG3-206ENST00000588423 CCDC144AA2RUR9 1427 aa23.78■■□□□ 1.4
RETREG3-206ENST00000588423 ZNF326Q5BKZ1 582 aaKnown RBP23.78■■□□□ 1.4
RETREG3-206ENST00000588423 SLC26A8Q96RN1 970 aa23.78■■□□□ 1.4
RETREG3-206ENST00000588423 STRCP1A6NGW2 1772 aa23.78■■□□□ 1.4
RETREG3-206ENST00000588423 BCANQ96GW7 911 aa23.77■■□□□ 1.4
RETREG3-206ENST00000588423 NEXMIFQ5QGS0 1516 aa23.76■■□□□ 1.39
RETREG3-206ENST00000588423 TBX22Q9Y458 520 aa23.76■■□□□ 1.39
RETREG3-206ENST00000588423 DIP2AQ14689 1571 aa23.76■■□□□ 1.39
RETREG3-206ENST00000588423 NUTM2DQ5VT03 806 aaPredicted RBP23.75■■□□□ 1.39
RETREG3-206ENST00000588423 RPGRIP1LQ68CZ1 1315 aa23.75■■□□□ 1.39
RETREG3-206ENST00000588423 ADAMTS13Q76LX8 1427 aa23.75■■□□□ 1.39
RETREG3-206ENST00000588423 LRRC7Q96NW7 1537 aa23.74■■□□□ 1.39
RETREG3-206ENST00000588423 KCNA6P17658 529 aa23.74■■□□□ 1.39
RETREG3-206ENST00000588423 NWD1Q149M9 1564 aa23.73■■□□□ 1.39
RETREG3-206ENST00000588423 SETBP1Q9Y6X0 1596 aa23.72■■□□□ 1.39
RETREG3-206ENST00000588423 PIK3R4Q99570 1358 aa23.71■■□□□ 1.39
RETREG3-206ENST00000588423 NKTRP30414 1462 aaKnown RBP23.69■■□□□ 1.38
RETREG3-206ENST00000588423 SPATA31E1Q6ZUB1 1445 aa23.69■■□□□ 1.38
RETREG3-206ENST00000588423 VGFO15240 615 aaPredicted RBP23.68■■□□□ 1.38
RETREG3-206ENST00000588423 NRXN3Q9Y4C0 1643 aa23.68■■□□□ 1.38
RETREG3-206ENST00000588423 CHD2O14647 1828 aaKnown RBP23.66■■□□□ 1.38
RETREG3-206ENST00000588423 ANKRD30BQ9BXX2 1392 aa23.65■■□□□ 1.38
RETREG3-206ENST00000588423 UBAP1LF5GYI3 381 aa23.65■■□□□ 1.38
RETREG3-206ENST00000588423 SENP3Q9H4L4 574 aaPredicted RBP23.65■■□□□ 1.38
RETREG3-206ENST00000588423 PPLO60437 1756 aa23.64■■□□□ 1.37
RETREG3-206ENST00000588423 TOM1O60784 492 aa23.63■■□□□ 1.37
RETREG3-206ENST00000588423 PROSER2Q86WR7 435 aaPredicted RBP23.61■■□□□ 1.37
RETREG3-206ENST00000588423 TMEM94Q12767 1356 aa23.61■■□□□ 1.37
RETREG3-206ENST00000588423 XIRP1Q702N8 1843 aaKnown RBP23.59■■□□□ 1.37
RETREG3-206ENST00000588423 RGL3Q3MIN7 710 aa23.59■■□□□ 1.37
RETREG3-206ENST00000588423 NCOA3Q9Y6Q9 1424 aa23.59■■□□□ 1.37
RETREG3-206ENST00000588423 IFT172Q9UG01 1749 aa23.58■■□□□ 1.37
RETREG3-206ENST00000588423 PTPRUQ92729 1446 aa23.58■■□□□ 1.36
RETREG3-206ENST00000588423 TRIM26Q12899 539 aaPredicted RBP23.57■■□□□ 1.36
RETREG3-206ENST00000588423 ALKQ9UM73 1620 aa23.57■■□□□ 1.36
RETREG3-206ENST00000588423 METP08581 1390 aa23.56■■□□□ 1.36
RETREG3-206ENST00000588423 AMOTL2Q9Y2J4 779 aa23.56■■□□□ 1.36
RETREG3-206ENST00000588423 XRN1Q8IZH2 1706 aaKnown RBP23.54■■□□□ 1.36
RETREG3-206ENST00000588423 SETD1AO15047 1707 aaKnown RBP23.53■■□□□ 1.36
RETREG3-206ENST00000588423 ADGRF5Q8IZF2 1346 aa23.53■■□□□ 1.36
RETREG3-206ENST00000588423 MYOM2P54296 1465 aa23.51■■□□□ 1.35
RETREG3-206ENST00000588423 MSH6P52701 1360 aa23.51■■□□□ 1.35
RETREG3-206ENST00000588423 PIK3C2GO75747 1445 aa23.5■■□□□ 1.35
RETREG3-206ENST00000588423 PRAG1Q86YV5 1406 aa23.5■■□□□ 1.35
RETREG3-206ENST00000588423 NRXN1Q9ULB1 1477 aa23.49■■□□□ 1.35
RETREG3-206ENST00000588423 PIP4K2BP78356 416 aa23.49■■□□□ 1.35
RETREG3-206ENST00000588423 RBM33Q96EV2 1170 aaKnown RBP23.49■■□□□ 1.35
RETREG3-206ENST00000588423 STAC3Q96MF2 364 aa23.46■■□□□ 1.35
RETREG3-206ENST00000588423 SCAF1Q9H7N4 1312 aaKnown RBP23.46■■□□□ 1.35
RETREG3-206ENST00000588423 PTCH1Q13635 1447 aa23.45■■□□□ 1.34
RETREG3-206ENST00000588423 C19orf44Q9H6X5 657 aa23.44■■□□□ 1.34
RETREG3-206ENST00000588423 FAM135BQ49AJ0 1406 aa23.42■■□□□ 1.34
RETREG3-206ENST00000588423 C14orf37Q86TY3 774 aa23.41■■□□□ 1.34
RETREG3-206ENST00000588423 C14orf93Q9H972 538 aaKnown RBP23.41■■□□□ 1.34
RETREG3-206ENST00000588423 DCCP43146 1447 aa23.41■■□□□ 1.34
RETREG3-206ENST00000588423 LAMC1P11047 1609 aa23.41■■□□□ 1.34
RETREG3-206ENST00000588423 CADPS2Q86UW7 1296 aa23.39■■□□□ 1.33
RETREG3-206ENST00000588423 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.39■■□□□ 1.33
RETREG3-206ENST00000588423 DHX57Q6P158 1386 aaKnown RBP23.39■■□□□ 1.33
RETREG3-206ENST00000588423 DCAF11Q8TEB1 546 aa23.38■■□□□ 1.33
RETREG3-206ENST00000588423 TECPR2O15040 1411 aa23.38■■□□□ 1.33
RETREG3-206ENST00000588423 LRPPRCP42704 1394 aaKnown RBP23.38■■□□□ 1.33
RETREG3-206ENST00000588423 ROBO2Q9HCK4 1378 aa23.38■■□□□ 1.33
RETREG3-206ENST00000588423 ASXL1Q8IXJ9 1541 aa23.38■■□□□ 1.33
RETREG3-206ENST00000588423 SLAIN2Q9P270 581 aa23.37■■□□□ 1.33
RETREG3-206ENST00000588423 ADGRL3Q9HAR2 1447 aa23.36■■□□□ 1.33
RETREG3-206ENST00000588423 ATF3P18847 181 aa23.36■■□□□ 1.33
RETREG3-206ENST00000588423 HSPA1LP34931 641 aa23.36■■□□□ 1.33
RETREG3-206ENST00000588423 ABCC11Q96J66 1382 aa23.36■■□□□ 1.33
RETREG3-206ENST00000588423 CFAP70Q5T0N1 1121 aa23.34■■□□□ 1.33
RETREG3-206ENST00000588423 KNDC1Q76NI1 1749 aa23.33■■□□□ 1.33
RETREG3-206ENST00000588423 TMEM132EQ6IEE7 984 aa23.33■■□□□ 1.33
RETREG3-206ENST00000588423 KDM2AQ9Y2K7 1162 aa23.33■■□□□ 1.33
RETREG3-206ENST00000588423 YTHDC2Q9H6S0 1430 aaKnown RBP23.33■■□□□ 1.32
RETREG3-206ENST00000588423 ROBO1Q9Y6N7 1651 aa23.32■■□□□ 1.32
RETREG3-206ENST00000588423 NALCNQ8IZF0 1738 aa23.31■■□□□ 1.32
RETREG3-206ENST00000588423 SIRT1Q96EB6 747 aa23.31■■□□□ 1.32
RETREG3-206ENST00000588423 ADGRB1O14514 1584 aa23.28■■□□□ 1.32
RETREG3-206ENST00000588423 STK26Q9P289 416 aa23.28■■□□□ 1.32
RETREG3-206ENST00000588423 MST1RQ04912 1400 aa23.27■■□□□ 1.32
RETREG3-206ENST00000588423 DLC1Q96QB1 1528 aa23.24■■□□□ 1.31
RETREG3-206ENST00000588423 SIN3AQ96ST3 1273 aa23.24■■□□□ 1.31
RETREG3-206ENST00000588423 WAPLQ7Z5K2 1190 aa23.23■■□□□ 1.31
RETREG3-206ENST00000588423 CDC42BPGQ6DT37 1551 aa23.23■■□□□ 1.31
RETREG3-206ENST00000588423 BRINP3Q76B58 766 aa23.21■■□□□ 1.31
RETREG3-206ENST00000588423 PLEKHH1Q9ULM0 1364 aa23.21■■□□□ 1.31
RETREG3-206ENST00000588423 KIAA1210Q9ULL0 1709 aa23.21■■□□□ 1.31
RETREG3-206ENST00000588423 L3MBTL2Q969R5 705 aa23.2■■□□□ 1.3
RETREG3-206ENST00000588423 AHDC1Q5TGY3 1603 aaPredicted RBP23.19■■□□□ 1.3
RETREG3-206ENST00000588423 C1orf167Q5SNV9 1468 aa23.19■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms