RNA–Protein interactions for RNA: ENST00000580540.1

SREBF1-219, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 4

Gene SREBF1, Length 540 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-219ENST00000580540 SLC4A1APQ9BWU0 796 aaKnown RBP24.89■■□□□ 1.58
SREBF1-219ENST00000580540 TMEM131LA2VDJ0 1609 aa24.89■■□□□ 1.57
SREBF1-219ENST00000580540 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.85■■□□□ 1.57
SREBF1-219ENST00000580540 SPHKAPQ2M3C7 1700 aa24.84■■□□□ 1.57
SREBF1-219ENST00000580540 ZFYVE9O95405 1425 aa24.84■■□□□ 1.57
SREBF1-219ENST00000580540 STRCP1A6NGW2 1772 aa24.83■■□□□ 1.57
SREBF1-219ENST00000580540 ZNF326Q5BKZ1 582 aaKnown RBP24.83■■□□□ 1.57
SREBF1-219ENST00000580540 SCAF1Q9H7N4 1312 aaKnown RBP24.83■■□□□ 1.56
SREBF1-219ENST00000580540 PLEKHG1Q9ULL1 1385 aa24.8■■□□□ 1.56
SREBF1-219ENST00000580540 TOM1O60784 492 aa24.79■■□□□ 1.56
SREBF1-219ENST00000580540 PIP4K2BP78356 416 aa24.79■■□□□ 1.56
SREBF1-219ENST00000580540 FOXD1Q16676 465 aa24.79■■□□□ 1.56
SREBF1-219ENST00000580540 LRRC7Q96NW7 1537 aa24.79■■□□□ 1.56
SREBF1-219ENST00000580540 KCNA6P17658 529 aa24.77■■□□□ 1.56
SREBF1-219ENST00000580540 SETD5Q9C0A6 1442 aa24.76■■□□□ 1.55
SREBF1-219ENST00000580540 TRPM2O94759 1503 aa24.76■■□□□ 1.55
SREBF1-219ENST00000580540 MPHOSPH9Q99550 1183 aa24.75■■□□□ 1.55
SREBF1-219ENST00000580540 CLTCL1P53675 1640 aa24.75■■□□□ 1.55
SREBF1-219ENST00000580540 PROSER2Q86WR7 435 aaPredicted RBP24.74■■□□□ 1.55
SREBF1-219ENST00000580540 RBM33Q96EV2 1170 aaKnown RBP24.72■■□□□ 1.55
SREBF1-219ENST00000580540 TBX22Q9Y458 520 aa24.72■■□□□ 1.55
SREBF1-219ENST00000580540 KIF1BO60333 1816 aa24.68■■□□□ 1.54
SREBF1-219ENST00000580540 TMEM94Q12767 1356 aa24.67■■□□□ 1.54
SREBF1-219ENST00000580540 RAB3GAP2Q9H2M9 1393 aa24.67■■□□□ 1.54
SREBF1-219ENST00000580540 ACIN1Q9UKV3 1341 aaKnown RBP24.67■■□□□ 1.54
SREBF1-219ENST00000580540 ADAMTS13Q76LX8 1427 aa24.66■■□□□ 1.54
SREBF1-219ENST00000580540 XIRP1Q702N8 1843 aaKnown RBP24.61■■□□□ 1.53
SREBF1-219ENST00000580540 HSPA1LP34931 641 aa24.61■■□□□ 1.53
SREBF1-219ENST00000580540 NKTRP30414 1462 aaKnown RBP24.61■■□□□ 1.53
SREBF1-219ENST00000580540 NWD1Q149M9 1564 aa24.61■■□□□ 1.53
SREBF1-219ENST00000580540 CHD2O14647 1828 aaKnown RBP24.61■■□□□ 1.53
SREBF1-219ENST00000580540 CCDC144AA2RUR9 1427 aa24.61■■□□□ 1.53
SREBF1-219ENST00000580540 RGL3Q3MIN7 710 aa24.6■■□□□ 1.53
SREBF1-219ENST00000580540 NEXMIFQ5QGS0 1516 aa24.6■■□□□ 1.53
SREBF1-219ENST00000580540 DIP2AQ14689 1571 aa24.59■■□□□ 1.53
SREBF1-219ENST00000580540 VGFO15240 615 aaPredicted RBP24.59■■□□□ 1.53
SREBF1-219ENST00000580540 C14orf37Q86TY3 774 aa24.59■■□□□ 1.53
SREBF1-219ENST00000580540 AMOTL2Q9Y2J4 779 aa24.59■■□□□ 1.53
SREBF1-219ENST00000580540 ALKQ9UM73 1620 aa24.59■■□□□ 1.53
SREBF1-219ENST00000580540 RPGRIP1LQ68CZ1 1315 aa24.58■■□□□ 1.52
SREBF1-219ENST00000580540 PIK3R4Q99570 1358 aa24.57■■□□□ 1.52
SREBF1-219ENST00000580540 SETBP1Q9Y6X0 1596 aa24.55■■□□□ 1.52
SREBF1-219ENST00000580540 MSH6P52701 1360 aa24.54■■□□□ 1.52
SREBF1-219ENST00000580540 NRXN3Q9Y4C0 1643 aa24.53■■□□□ 1.52
SREBF1-219ENST00000580540 PTPRUQ92729 1446 aa24.53■■□□□ 1.52
SREBF1-219ENST00000580540 METP08581 1390 aa24.53■■□□□ 1.52
SREBF1-219ENST00000580540 HRCP23327 699 aa24.48■■□□□ 1.51
SREBF1-219ENST00000580540 DISP3Q9P2K9 1392 aa24.48■■□□□ 1.51
SREBF1-219ENST00000580540 SPATA31E1Q6ZUB1 1445 aa24.47■■□□□ 1.51
SREBF1-219ENST00000580540 PPLO60437 1756 aa24.47■■□□□ 1.51
SREBF1-219ENST00000580540 ADGRF5Q8IZF2 1346 aa24.45■■□□□ 1.5
SREBF1-219ENST00000580540 C19orf44Q9H6X5 657 aa24.45■■□□□ 1.5
SREBF1-219ENST00000580540 SLAIN2Q9P270 581 aa24.45■■□□□ 1.5
SREBF1-219ENST00000580540 NCOA3Q9Y6Q9 1424 aa24.44■■□□□ 1.5
SREBF1-219ENST00000580540 ATF3P18847 181 aa24.44■■□□□ 1.5
SREBF1-219ENST00000580540 FAM135BQ49AJ0 1406 aa24.43■■□□□ 1.5
SREBF1-219ENST00000580540 ANKRD30BQ9BXX2 1392 aa24.42■■□□□ 1.5
SREBF1-219ENST00000580540 XRN1Q8IZH2 1706 aaKnown RBP24.41■■□□□ 1.5
SREBF1-219ENST00000580540 CADPS2Q86UW7 1296 aa24.41■■□□□ 1.5
SREBF1-219ENST00000580540 ROBO1Q9Y6N7 1651 aa24.37■■□□□ 1.49
SREBF1-219ENST00000580540 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.37■■□□□ 1.49
SREBF1-219ENST00000580540 STK26Q9P289 416 aa24.35■■□□□ 1.49
SREBF1-219ENST00000580540 SETD1AO15047 1707 aaKnown RBP24.35■■□□□ 1.49
SREBF1-219ENST00000580540 IFT172Q9UG01 1749 aa24.33■■□□□ 1.49
SREBF1-219ENST00000580540 TMEM132EQ6IEE7 984 aa24.33■■□□□ 1.49
SREBF1-219ENST00000580540 ROBO2Q9HCK4 1378 aa24.32■■□□□ 1.48
SREBF1-219ENST00000580540 KDM2AQ9Y2K7 1162 aa24.31■■□□□ 1.48
SREBF1-219ENST00000580540 PIK3C2GO75747 1445 aa24.29■■□□□ 1.48
SREBF1-219ENST00000580540 ADGRL3Q9HAR2 1447 aa24.29■■□□□ 1.48
SREBF1-219ENST00000580540 PTCH1Q13635 1447 aa24.28■■□□□ 1.48
SREBF1-219ENST00000580540 DCCP43146 1447 aa24.27■■□□□ 1.48
SREBF1-219ENST00000580540 CFAP70Q5T0N1 1121 aa24.27■■□□□ 1.48
SREBF1-219ENST00000580540 DCAF11Q8TEB1 546 aa24.27■■□□□ 1.48
SREBF1-219ENST00000580540 MED1Q15648 1581 aaPredicted RBP24.26■■□□□ 1.47
SREBF1-219ENST00000580540 C14orf93Q9H972 538 aaKnown RBP24.26■■□□□ 1.47
SREBF1-219ENST00000580540 BRINP3Q76B58 766 aa24.25■■□□□ 1.47
SREBF1-219ENST00000580540 WAPLQ7Z5K2 1190 aa24.24■■□□□ 1.47
SREBF1-219ENST00000580540 PHF23Q9BUL5 403 aaPredicted RBP24.24■■□□□ 1.47
SREBF1-219ENST00000580540 LRPPRCP42704 1394 aaKnown RBP24.24■■□□□ 1.47
SREBF1-219ENST00000580540 MYOM2P54296 1465 aa24.24■■□□□ 1.47
SREBF1-219ENST00000580540 PHLPP1O60346 1717 aa24.24■■□□□ 1.47
SREBF1-219ENST00000580540 NALCNQ8IZF0 1738 aa24.24■■□□□ 1.47
SREBF1-219ENST00000580540 ILDR2Q71H61 639 aa24.23■■□□□ 1.47
SREBF1-219ENST00000580540 MST1RQ04912 1400 aa24.23■■□□□ 1.47
SREBF1-219ENST00000580540 ASXL1Q8IXJ9 1541 aa24.2■■□□□ 1.47
SREBF1-219ENST00000580540 NRXN1Q9ULB1 1477 aa24.2■■□□□ 1.47
SREBF1-219ENST00000580540 PRAG1Q86YV5 1406 aa24.2■■□□□ 1.46
SREBF1-219ENST00000580540 YTHDC2Q9H6S0 1430 aaKnown RBP24.2■■□□□ 1.46
SREBF1-219ENST00000580540 ABCC11Q96J66 1382 aa24.2■■□□□ 1.46
SREBF1-219ENST00000580540 DHX57Q6P158 1386 aaKnown RBP24.19■■□□□ 1.46
SREBF1-219ENST00000580540 PLEKHH1Q9ULM0 1364 aa24.16■■□□□ 1.46
SREBF1-219ENST00000580540 TECPR2O15040 1411 aa24.16■■□□□ 1.46
SREBF1-219ENST00000580540 JCADQ9P266 1359 aa24.16■■□□□ 1.46
SREBF1-219ENST00000580540 C1orf167Q5SNV9 1468 aa24.15■■□□□ 1.46
SREBF1-219ENST00000580540 DDX17Q92841 729 aaKnown RBP24.15■■□□□ 1.46
SREBF1-219ENST00000580540 SAFB2Q14151 953 aaKnown RBP eCLIP24.14■■□□□ 1.45
SREBF1-219ENST00000580540 STAC3Q96MF2 364 aa24.14■■□□□ 1.45
SREBF1-219ENST00000580540 LAMC1P11047 1609 aa24.13■■□□□ 1.45
SREBF1-219ENST00000580540 COL16A1Q07092 1604 aaPredicted RBP24.13■■□□□ 1.45
SREBF1-219ENST00000580540 AHDC1Q5TGY3 1603 aaPredicted RBP24.13■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 74.1 ms