RNA–Protein interactions for RNA: ENST00000578995.5

SMARCE1-215, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 2

Gene SMARCE1, Length 534 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-215ENST00000578995 TRIM67Q6ZTA4 783 aa6.62□□□□□ -1.35
SMARCE1-215ENST00000578995 ADAMTS12P58397 1594 aa6.61□□□□□ -1.35
SMARCE1-215ENST00000578995 TMUB1Q9BVT8 246 aa6.61□□□□□ -1.35
SMARCE1-215ENST00000578995 C6orf132Q5T0Z8 1188 aa6.6□□□□□ -1.35
SMARCE1-215ENST00000578995 ZNF516Q92618 1163 aa6.6□□□□□ -1.35
SMARCE1-215ENST00000578995 AQRO60306 1485 aaKnown RBP eCLIP6.6□□□□□ -1.35
SMARCE1-215ENST00000578995 WIPF1O43516 503 aa6.59□□□□□ -1.35
SMARCE1-215ENST00000578995 PDE4AP27815 886 aa6.59□□□□□ -1.35
SMARCE1-215ENST00000578995 PRR20EP86478 221 aa6.59□□□□□ -1.35
SMARCE1-215ENST00000578995 PRR20CP86479 221 aa6.59□□□□□ -1.35
SMARCE1-215ENST00000578995 PRR20DP86480 221 aa6.59□□□□□ -1.35
SMARCE1-215ENST00000578995 PRR20BP86481 221 aa6.59□□□□□ -1.35
SMARCE1-215ENST00000578995 PRR20AP86496 221 aa6.59□□□□□ -1.35
SMARCE1-215ENST00000578995 ERICH3Q5RHP9 1530 aa6.59□□□□□ -1.35
SMARCE1-215ENST00000578995 CUL7Q14999 1698 aa6.58□□□□□ -1.36
SMARCE1-215ENST00000578995 PACS2Q86VP3 889 aa6.58□□□□□ -1.36
SMARCE1-215ENST00000578995 GAPVD1Q14C86 1478 aa6.58□□□□□ -1.36
SMARCE1-215ENST00000578995 RUSC2Q8N2Y8 1516 aa6.57□□□□□ -1.36
SMARCE1-215ENST00000578995 FAM187AA6NFU0 413 aa6.57□□□□□ -1.36
SMARCE1-215ENST00000578995 RGL2O15211 777 aa6.57□□□□□ -1.36
SMARCE1-215ENST00000578995 SLC19A1P41440 591 aa6.57□□□□□ -1.36
SMARCE1-215ENST00000578995 GRIN2BQ13224 1484 aa6.57□□□□□ -1.36
SMARCE1-215ENST00000578995 SNAPC4Q5SXM2 1469 aa6.57□□□□□ -1.36
SMARCE1-215ENST00000578995 MAGI1Q96QZ7 1491 aaPredicted RBP6.57□□□□□ -1.36
SMARCE1-215ENST00000578995 TDRD9Q8NDG6 1382 aaKnown RBP6.57□□□□□ -1.36
SMARCE1-215ENST00000578995 NKX2-3Q8TAU0 364 aa6.56□□□□□ -1.36
SMARCE1-215ENST00000578995 EPAS1Q99814 870 aa6.56□□□□□ -1.36
SMARCE1-215ENST00000578995 CLASP1Q7Z460 1538 aa6.55□□□□□ -1.36
SMARCE1-215ENST00000578995 SAMD7Q7Z3H4 446 aa6.55□□□□□ -1.36
SMARCE1-215ENST00000578995 CEP170Q5SW79 1584 aa6.54□□□□□ -1.36
SMARCE1-215ENST00000578995 ZNF598Q86UK7 904 aaKnown RBP6.54□□□□□ -1.36
SMARCE1-215ENST00000578995 CTTNBP2Q8WZ74 1663 aa6.54□□□□□ -1.36
SMARCE1-215ENST00000578995 SYNJ2O15056 1496 aa6.53□□□□□ -1.36
SMARCE1-215ENST00000578995 SPRYD7Q5W111 196 aa6.53□□□□□ -1.36
SMARCE1-215ENST00000578995 AAASQ9NRG9 546 aa6.53□□□□□ -1.36
SMARCE1-215ENST00000578995 SHROOM2Q13796 1616 aa6.53□□□□□ -1.36
SMARCE1-215ENST00000578995 NCKAP5LQ9HCH0 1330 aa6.52□□□□□ -1.37
SMARCE1-215ENST00000578995 ST8SIA5O15466 376 aa6.52□□□□□ -1.37
SMARCE1-215ENST00000578995 NFX1Q12986 1120 aaKnown RBP6.52□□□□□ -1.37
SMARCE1-215ENST00000578995 DDX27Q96GQ7 796 aaKnown RBP6.52□□□□□ -1.37
SMARCE1-215ENST00000578995 GRIN2AQ12879 1464 aa6.52□□□□□ -1.37
SMARCE1-215ENST00000578995 KIF27Q86VH2 1401 aa6.51□□□□□ -1.37
SMARCE1-215ENST00000578995 FAM181BA6NEQ2 426 aa6.51□□□□□ -1.37
SMARCE1-215ENST00000578995 NECTIN2Q92692 538 aa6.51□□□□□ -1.37
SMARCE1-215ENST00000578995 RYDENQ9NUL5 291 aaKnown RBP6.51□□□□□ -1.37
SMARCE1-215ENST00000578995 TSKSQ9UJT2 592 aa6.51□□□□□ -1.37
SMARCE1-215ENST00000578995 IGF1RP08069 1367 aa6.51□□□□□ -1.37
SMARCE1-215ENST00000578995 NUP160Q12769 1436 aa6.5□□□□□ -1.37
SMARCE1-215ENST00000578995 KIF21BO75037 1637 aa6.5□□□□□ -1.37
SMARCE1-215ENST00000578995 APLP1P51693 650 aa6.5□□□□□ -1.37
SMARCE1-215ENST00000578995 HDGFP51858 240 aaKnown RBP6.5□□□□□ -1.37
SMARCE1-215ENST00000578995 FHAD1B1AJZ9 1412 aa6.5□□□□□ -1.37
SMARCE1-215ENST00000578995 PRXQ9BXM0 1461 aa6.49□□□□□ -1.37
SMARCE1-215ENST00000578995 LARP6Q9BRS8 491 aaKnown RBP6.49□□□□□ -1.37
SMARCE1-215ENST00000578995 EMILIN3Q9NT22 766 aa6.49□□□□□ -1.37
SMARCE1-215ENST00000578995 RNF223E7ERA6 249 aa6.48□□□□□ -1.37
SMARCE1-215ENST00000578995 GDF9O60383 454 aa6.48□□□□□ -1.37
SMARCE1-215ENST00000578995 COPS2P61201 443 aa6.48□□□□□ -1.37
SMARCE1-215ENST00000578995 ZNF697Q5TEC3 545 aa6.48□□□□□ -1.37
SMARCE1-215ENST00000578995 HS6ST3Q8IZP7 471 aa6.48□□□□□ -1.37
SMARCE1-215ENST00000578995 EMID1Q96A84 441 aaPredicted RBP6.48□□□□□ -1.37
SMARCE1-215ENST00000578995 C11orf95C9JLR9 678 aaPredicted RBP6.47□□□□□ -1.37
SMARCE1-215ENST00000578995 TNFRSF10AO00220 468 aa6.47□□□□□ -1.37
SMARCE1-215ENST00000578995 RNF40O75150 1001 aa6.47□□□□□ -1.37
SMARCE1-215ENST00000578995 ZPR1O75312 459 aa6.47□□□□□ -1.37
SMARCE1-215ENST00000578995 SUZ12Q15022 739 aaKnown RBP6.47□□□□□ -1.37
SMARCE1-215ENST00000578995 CRIPAKQ8N1N5 446 aa6.47□□□□□ -1.37
SMARCE1-215ENST00000578995 RBM33Q96EV2 1170 aaKnown RBP6.47□□□□□ -1.37
SMARCE1-215ENST00000578995 EEA1Q15075 1411 aa6.47□□□□□ -1.37
SMARCE1-215ENST00000578995 RIMBP3CA6NJZ7 1639 aa6.47□□□□□ -1.37
SMARCE1-215ENST00000578995 RIMBP3BA6NNM3 1639 aa6.47□□□□□ -1.37
SMARCE1-215ENST00000578995 RIMBP3Q9UFD9 1639 aa6.47□□□□□ -1.37
SMARCE1-215ENST00000578995 SMAPO00193 183 aa6.46□□□□□ -1.38
SMARCE1-215ENST00000578995 ERCC6L2Q5T890 1561 aa6.46□□□□□ -1.38
SMARCE1-215ENST00000578995 MFSD10Q14728 455 aa6.45□□□□□ -1.38
SMARCE1-215ENST00000578995 ANKLE1Q8NAG6 615 aa6.45□□□□□ -1.38
SMARCE1-215ENST00000578995 GMPR2Q9P2T1 348 aaKnown RBP6.45□□□□□ -1.38
SMARCE1-215ENST00000578995 RAPGEF2Q9Y4G8 1499 aa6.45□□□□□ -1.38
SMARCE1-215ENST00000578995 PKD2Q13563 968 aa6.44□□□□□ -1.38
SMARCE1-215ENST00000578995 IQGAP2Q13576 1575 aa6.44□□□□□ -1.38
SMARCE1-215ENST00000578995 CARMIL1Q5VZK9 1371 aa6.44□□□□□ -1.38
SMARCE1-215ENST00000578995 NBPF26B4DH59 902 aa6.43□□□□□ -1.38
SMARCE1-215ENST00000578995 ARHGEF11O15085 1522 aa6.43□□□□□ -1.38
SMARCE1-215ENST00000578995 KIAA0586Q9BVV6 1533 aa6.42□□□□□ -1.38
SMARCE1-215ENST00000578995 UGGT2Q9NYU1 1516 aa6.42□□□□□ -1.38
SMARCE1-215ENST00000578995 LIAT1Q6ZQX7 453 aa6.42□□□□□ -1.38
SMARCE1-215ENST00000578995 TATDN2Q93075 761 aa6.42□□□□□ -1.38
SMARCE1-215ENST00000578995 CDCA7LQ96GN5 454 aa6.42□□□□□ -1.38
SMARCE1-215ENST00000578995 DACH1Q9UI36 760 aa6.42□□□□□ -1.38
SMARCE1-215ENST00000578995 PNMA3Q9UL41 463 aa6.42□□□□□ -1.38
SMARCE1-215ENST00000578995 SAMD9Q5K651 1589 aa6.42□□□□□ -1.38
SMARCE1-215ENST00000578995 TERTO14746 1132 aaKnown RBP6.41□□□□□ -1.38
SMARCE1-215ENST00000578995 AXIN1O15169 862 aa6.41□□□□□ -1.38
SMARCE1-215ENST00000578995 PRSS12P56730 875 aa6.41□□□□□ -1.38
SMARCE1-215ENST00000578995 LMOD2Q6P5Q4 547 aa6.41□□□□□ -1.38
SMARCE1-215ENST00000578995 KIAA0556O60303 1618 aa6.4□□□□□ -1.38
SMARCE1-215ENST00000578995 AVPP01185 164 aa6.4□□□□□ -1.38
SMARCE1-215ENST00000578995 EN1Q05925 392 aaPredicted RBP6.4□□□□□ -1.38
SMARCE1-215ENST00000578995 CTC1Q2NKJ3 1217 aa6.4□□□□□ -1.38
SMARCE1-215ENST00000578995 PRR14Q9BWN1 585 aa6.4□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms