RNA–Protein interactions for RNA: ENST00000578709.5

ERBB2-209, Transcript of erb-b2 receptor tyrosine kinase 2, human

TSL 4

Gene ERBB2, Length 559 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ERBB2-209	ENST00000578709	ANKRD30B	Q9BXX2	1392 aa		34.93	■■■■□ 3.18
ERBB2-209	ENST00000578709	IQGAP1	P46940	1657 aa		34.92	■■■■□ 3.18
ERBB2-209	ENST00000578709	HDGF	P51858	240 aa	Known RBP	34.9	■■■■□ 3.18
ERBB2-209	ENST00000578709	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	34.88	■■■■□ 3.17
ERBB2-209	ENST00000578709	SPATA31E1	Q6ZUB1	1445 aa		34.84	■■■■□ 3.17
ERBB2-209	ENST00000578709	ZNF326	Q5BKZ1	582 aa	Known RBP	34.84	■■■■□ 3.17
ERBB2-209	ENST00000578709	PLEKHG1	Q9ULL1	1385 aa		34.82	■■■■□ 3.16
ERBB2-209	ENST00000578709	NEXMIF	Q5QGS0	1516 aa		34.81	■■■■□ 3.16
ERBB2-209	ENST00000578709	PPP1R15A	O75807	674 aa	Predicted RBP	34.8	■■■■□ 3.16
ERBB2-209	ENST00000578709	PCGF6	Q9BYE7	350 aa		34.8	■■■■□ 3.16
ERBB2-209	ENST00000578709	RPGRIP1L	Q68CZ1	1315 aa		34.79	■■■■□ 3.16
ERBB2-209	ENST00000578709	NUTM2D	Q5VT03	806 aa	Predicted RBP	34.77	■■■■□ 3.16
ERBB2-209	ENST00000578709	DHX57	Q6P158	1386 aa	Known RBP	34.75	■■■■□ 3.15
ERBB2-209	ENST00000578709	PPL	O60437	1756 aa		34.72	■■■■□ 3.15
ERBB2-209	ENST00000578709	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	34.72	■■■■□ 3.15
ERBB2-209	ENST00000578709	LTBP4	Q8N2S1	1624 aa		34.71	■■■■□ 3.15
ERBB2-209	ENST00000578709	RGL3	Q3MIN7	710 aa		34.7	■■■■□ 3.15
ERBB2-209	ENST00000578709	VGF	O15240	615 aa	Predicted RBP	34.67	■■■■□ 3.14
ERBB2-209	ENST00000578709	BCAN	Q96GW7	911 aa		34.67	■■■■□ 3.14
ERBB2-209	ENST00000578709	SLC26A8	Q96RN1	970 aa		34.67	■■■■□ 3.14
ERBB2-209	ENST00000578709	IFT172	Q9UG01	1749 aa		34.67	■■■■□ 3.14
ERBB2-209	ENST00000578709	SETBP1	Q9Y6X0	1596 aa		34.66	■■■■□ 3.14
ERBB2-209	ENST00000578709	ADAMTS13	Q76LX8	1427 aa		34.66	■■■■□ 3.14
ERBB2-209	ENST00000578709	DIP2A	Q14689	1571 aa		34.65	■■■■□ 3.14
ERBB2-209	ENST00000578709	NRXN3	Q9Y4C0	1643 aa		34.64	■■■■□ 3.14
ERBB2-209	ENST00000578709	TBX22	Q9Y458	520 aa		34.64	■■■■□ 3.14
ERBB2-209	ENST00000578709	SENP3	Q9H4L4	574 aa	Predicted RBP	34.62	■■■■□ 3.13
ERBB2-209	ENST00000578709	STRCP1	A6NGW2	1772 aa		34.59	■■■■□ 3.13
ERBB2-209	ENST00000578709	CPS1	P31327	1500 aa		34.58	■■■■□ 3.13
ERBB2-209	ENST00000578709	CERK	Q8TCT0	537 aa		34.55	■■■■□ 3.12
ERBB2-209	ENST00000578709	ADGRF5	Q8IZF2	1346 aa		34.55	■■■■□ 3.12
ERBB2-209	ENST00000578709	MYOM2	P54296	1465 aa		34.54	■■■■□ 3.12
ERBB2-209	ENST00000578709	PIK3R4	Q99570	1358 aa		34.54	■■■■□ 3.12
ERBB2-209	ENST00000578709	KCNA6	P17658	529 aa		34.53	■■■■□ 3.12
ERBB2-209	ENST00000578709	NWD1	Q149M9	1564 aa		34.53	■■■■□ 3.12
ERBB2-209	ENST00000578709	CHD2	O14647	1828 aa	Known RBP	34.51	■■■■□ 3.12
ERBB2-209	ENST00000578709	NRXN1	Q9ULB1	1477 aa		34.51	■■■■□ 3.11
ERBB2-209	ENST00000578709	ALK	Q9UM73	1620 aa		34.48	■■■■□ 3.11
ERBB2-209	ENST00000578709	PIK3C2G	O75747	1445 aa		34.48	■■■■□ 3.11
ERBB2-209	ENST00000578709	SETD1A	O15047	1707 aa	Known RBP	34.48	■■■■□ 3.11
ERBB2-209	ENST00000578709	STAC3	Q96MF2	364 aa		34.48	■■■■□ 3.11
ERBB2-209	ENST00000578709	SIN3A	Q96ST3	1273 aa		34.48	■■■■□ 3.11
ERBB2-209	ENST00000578709	IQSEC2	Q5JU85	1478 aa		34.47	■■■■□ 3.11
ERBB2-209	ENST00000578709	MET	P08581	1390 aa		34.46	■■■■□ 3.11
ERBB2-209	ENST00000578709	NKTR	P30414	1462 aa	Known RBP	34.45	■■■■□ 3.1
ERBB2-209	ENST00000578709	DCAF11	Q8TEB1	546 aa		34.44	■■■■□ 3.1
ERBB2-209	ENST00000578709	LRRC7	Q96NW7	1537 aa		34.44	■■■■□ 3.1
ERBB2-209	ENST00000578709	PTPRU	Q92729	1446 aa		34.43	■■■■□ 3.1
ERBB2-209	ENST00000578709	NEUROD1	Q13562	356 aa		34.38	■■■■□ 3.09
ERBB2-209	ENST00000578709	KDM2A	Q9Y2K7	1162 aa		34.38	■■■■□ 3.09
ERBB2-209	ENST00000578709	XRN1	Q8IZH2	1706 aa	Known RBP	34.38	■■■■□ 3.09
ERBB2-209	ENST00000578709	AMOTL2	Q9Y2J4	779 aa		34.37	■■■■□ 3.09
ERBB2-209	ENST00000578709	C14orf93	Q9H972	538 aa	Known RBP	34.36	■■■■□ 3.09
ERBB2-209	ENST00000578709	LAMC1	P11047	1609 aa		34.34	■■■■□ 3.09
ERBB2-209	ENST00000578709	PROSER2	Q86WR7	435 aa	Predicted RBP	34.33	■■■■□ 3.09
ERBB2-209	ENST00000578709	XIRP1	Q702N8	1843 aa	Known RBP	34.32	■■■■□ 3.09
ERBB2-209	ENST00000578709	L3MBTL2	Q969R5	705 aa		34.32	■■■■□ 3.08
ERBB2-209	ENST00000578709	TMEM94	Q12767	1356 aa		34.31	■■■■□ 3.08
ERBB2-209	ENST00000578709	PRAG1	Q86YV5	1406 aa		34.3	■■■■□ 3.08
ERBB2-209	ENST00000578709	ASXL1	Q8IXJ9	1541 aa		34.3	■■■■□ 3.08
ERBB2-209	ENST00000578709	CLSPN	Q9HAW4	1339 aa		34.3	■■■■□ 3.08
ERBB2-209	ENST00000578709	CFAP70	Q5T0N1	1121 aa		34.29	■■■■□ 3.08
ERBB2-209	ENST00000578709	NCOA3	Q9Y6Q9	1424 aa		34.26	■■■■□ 3.07
ERBB2-209	ENST00000578709	PTCH1	Q13635	1447 aa		34.24	■■■■□ 3.07
ERBB2-209	ENST00000578709	LRPPRC	P42704	1394 aa	Known RBP	34.23	■■■■□ 3.07
ERBB2-209	ENST00000578709	TMEM132E	Q6IEE7	984 aa		34.23	■■■■□ 3.07
ERBB2-209	ENST00000578709	FBXO41	Q8TF61	875 aa		34.22	■■■■□ 3.07
ERBB2-209	ENST00000578709	RBM33	Q96EV2	1170 aa	Known RBP	34.22	■■■■□ 3.07
ERBB2-209	ENST00000578709	TECPR2	O15040	1411 aa		34.21	■■■■□ 3.07
ERBB2-209	ENST00000578709	ADGRB1	O14514	1584 aa		34.2	■■■■□ 3.07
ERBB2-209	ENST00000578709	ABCC11	Q96J66	1382 aa		34.2	■■■■□ 3.07
ERBB2-209	ENST00000578709	YTHDC2	Q9H6S0	1430 aa	Known RBP	34.2	■■■■□ 3.06
ERBB2-209	ENST00000578709	TONSL	Q96HA7	1378 aa		34.19	■■■■□ 3.06
ERBB2-209	ENST00000578709	ROBO2	Q9HCK4	1378 aa		34.19	■■■■□ 3.06
ERBB2-209	ENST00000578709	KIAA1210	Q9ULL0	1709 aa		34.18	■■■■□ 3.06
ERBB2-209	ENST00000578709	KNDC1	Q76NI1	1749 aa		34.18	■■■■□ 3.06
ERBB2-209	ENST00000578709	CCER1	Q8TC90	406 aa	Predicted RBP	34.15	■■■■□ 3.06
ERBB2-209	ENST00000578709	UBAP1L	F5GYI3	381 aa		34.14	■■■■□ 3.06
ERBB2-209	ENST00000578709	STK26	Q9P289	416 aa		34.14	■■■■□ 3.06
ERBB2-209	ENST00000578709	MSH6	P52701	1360 aa		34.12	■■■■□ 3.05
ERBB2-209	ENST00000578709	TOM1	O60784	492 aa		34.12	■■■■□ 3.05
ERBB2-209	ENST00000578709	SIRT1	Q96EB6	747 aa		34.1	■■■■□ 3.05
ERBB2-209	ENST00000578709	C19orf44	Q9H6X5	657 aa		34.09	■■■■□ 3.05
ERBB2-209	ENST00000578709	C14orf37	Q86TY3	774 aa		34.08	■■■■□ 3.05
ERBB2-209	ENST00000578709	FAM135B	Q49AJ0	1406 aa		34.07	■■■■□ 3.04
ERBB2-209	ENST00000578709	ADGRL3	Q9HAR2	1447 aa		34.07	■■■■□ 3.04
ERBB2-209	ENST00000578709	DLC1	Q96QB1	1528 aa		34.07	■■■■□ 3.04
ERBB2-209	ENST00000578709	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	34.06	■■■■□ 3.04
ERBB2-209	ENST00000578709	DCC	P43146	1447 aa		34.04	■■■■□ 3.04
ERBB2-209	ENST00000578709	NALCN	Q8IZF0	1738 aa		34.04	■■■■□ 3.04
ERBB2-209	ENST00000578709	TRPM1	Q7Z4N2	1603 aa		34.04	■■■■□ 3.04
ERBB2-209	ENST00000578709	NBPF1	Q3BBV0	1214 aa		34.03	■■■■□ 3.04
ERBB2-209	ENST00000578709	ILDR1	Q86SU0	546 aa	Predicted RBP	34.03	■■■■□ 3.04
ERBB2-209	ENST00000578709	TIMELESS	Q9UNS1	1208 aa		34.03	■■■■□ 3.04
ERBB2-209	ENST00000578709	NBPF8	Q3BBV2	869 aa		34.02	■■■■□ 3.04
ERBB2-209	ENST00000578709	WAPL	Q7Z5K2	1190 aa		34.01	■■■■□ 3.03
ERBB2-209	ENST00000578709	PLEKHH1	Q9ULM0	1364 aa		34	■■■■□ 3.03
ERBB2-209	ENST00000578709	CADPS2	Q86UW7	1296 aa		33.99	■■■■□ 3.03
ERBB2-209	ENST00000578709	TRAK1	Q9UPV9	953 aa		33.98	■■■■□ 3.03
ERBB2-209	ENST00000578709	ATF3	P18847	181 aa		33.97	■■■■□ 3.03

Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms