RNA–Protein interactions for RNA: ENST00000578314.1

VAPA-205, Transcript of VAMP associated protein A, humanhuman

TSL 3

Gene VAPA, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-205ENST00000578314 RIMS2Q9UQ26 1411 aa34.58■■■■□ 3.13
VAPA-205ENST00000578314 ALKQ9UM73 1620 aa34.57■■■■□ 3.12
VAPA-205ENST00000578314 SLC26A8Q96RN1 970 aa34.56■■■■□ 3.12
VAPA-205ENST00000578314 ABCF1Q8NE71 845 aaKnown RBP eCLIP34.55■■■■□ 3.12
VAPA-205ENST00000578314 TRIM52Q96A61 297 aa34.54■■■■□ 3.12
VAPA-205ENST00000578314 PLEKHG1Q9ULL1 1385 aa34.53■■■■□ 3.12
VAPA-205ENST00000578314 PPP1R15AO75807 674 aaPredicted RBP34.52■■■■□ 3.12
VAPA-205ENST00000578314 KCNA6P17658 529 aa34.52■■■■□ 3.12
VAPA-205ENST00000578314 HSPA1LP34931 641 aa34.51■■■■□ 3.12
VAPA-205ENST00000578314 BCANQ96GW7 911 aa34.5■■■■□ 3.11
VAPA-205ENST00000578314 MYO5BQ9ULV0 1848 aa34.48■■■■□ 3.11
VAPA-205ENST00000578314 ILDR2Q71H61 639 aa34.46■■■■□ 3.11
VAPA-205ENST00000578314 XIRP1Q702N8 1843 aaKnown RBP34.44■■■■□ 3.1
VAPA-205ENST00000578314 SLC4A1APQ9BWU0 796 aaKnown RBP34.44■■■■□ 3.1
VAPA-205ENST00000578314 TBX22Q9Y458 520 aa34.44■■■■□ 3.1
VAPA-205ENST00000578314 SPHKAPQ2M3C7 1700 aa34.44■■■■□ 3.1
VAPA-205ENST00000578314 NUTM2DQ5VT03 806 aaPredicted RBP34.43■■■■□ 3.1
VAPA-205ENST00000578314 SENP3Q9H4L4 574 aaPredicted RBP34.4■■■■□ 3.1
VAPA-205ENST00000578314 TRPM2O94759 1503 aa34.4■■■■□ 3.1
VAPA-205ENST00000578314 PROSER2Q86WR7 435 aaPredicted RBP34.36■■■■□ 3.09
VAPA-205ENST00000578314 ADAMTS13Q76LX8 1427 aa34.36■■■■□ 3.09
VAPA-205ENST00000578314 TMEM94Q12767 1356 aa34.36■■■■□ 3.09
VAPA-205ENST00000578314 NWD1Q149M9 1564 aa34.34■■■■□ 3.09
VAPA-205ENST00000578314 ZNF326Q5BKZ1 582 aaKnown RBP34.34■■■■□ 3.09
VAPA-205ENST00000578314 CLTCL1P53675 1640 aa34.32■■■■□ 3.08
VAPA-205ENST00000578314 NKTRP30414 1462 aaKnown RBP34.32■■■■□ 3.08
VAPA-205ENST00000578314 ACIN1Q9UKV3 1341 aaKnown RBP34.3■■■■□ 3.08
VAPA-205ENST00000578314 PIK3R4Q99570 1358 aa34.29■■■■□ 3.08
VAPA-205ENST00000578314 MED1Q15648 1581 aaPredicted RBP34.28■■■■□ 3.08
VAPA-205ENST00000578314 MPHOSPH9Q99550 1183 aa34.28■■■■□ 3.08
VAPA-205ENST00000578314 SETD5Q9C0A6 1442 aa34.27■■■■□ 3.08
VAPA-205ENST00000578314 DIP2AQ14689 1571 aa34.27■■■■□ 3.08
VAPA-205ENST00000578314 RBM33Q96EV2 1170 aaKnown RBP34.26■■■■□ 3.08
VAPA-205ENST00000578314 FOXD1Q16676 465 aa34.25■■■■□ 3.07
VAPA-205ENST00000578314 CHD2O14647 1828 aaKnown RBP34.23■■■■□ 3.07
VAPA-205ENST00000578314 SOCS7O14512 581 aa34.22■■■■□ 3.07
VAPA-205ENST00000578314 NEXMIFQ5QGS0 1516 aa34.2■■■■□ 3.06
VAPA-205ENST00000578314 RPGRIP1LQ68CZ1 1315 aa34.19■■■■□ 3.06
VAPA-205ENST00000578314 SETBP1Q9Y6X0 1596 aa34.19■■■■□ 3.06
VAPA-205ENST00000578314 NCOA3Q9Y6Q9 1424 aa34.18■■■■□ 3.06
VAPA-205ENST00000578314 FAM135BQ49AJ0 1406 aa34.17■■■■□ 3.06
VAPA-205ENST00000578314 AMOTL2Q9Y2J4 779 aa34.17■■■■□ 3.06
VAPA-205ENST00000578314 KIF1BO60333 1816 aa34.16■■■■□ 3.06
VAPA-205ENST00000578314 MSH6P52701 1360 aa34.15■■■■□ 3.06
VAPA-205ENST00000578314 VGFO15240 615 aaPredicted RBP34.15■■■■□ 3.06
VAPA-205ENST00000578314 PTPRUQ92729 1446 aa34.14■■■■□ 3.06
VAPA-205ENST00000578314 NRXN3Q9Y4C0 1643 aa34.14■■■■□ 3.06
VAPA-205ENST00000578314 RAB3GAP2Q9H2M9 1393 aa34.12■■■■□ 3.05
VAPA-205ENST00000578314 CCDC144AA2RUR9 1427 aa34.11■■■■□ 3.05
VAPA-205ENST00000578314 METP08581 1390 aa34.11■■■■□ 3.05
VAPA-205ENST00000578314 ROBO1Q9Y6N7 1651 aa34.09■■■■□ 3.05
VAPA-205ENST00000578314 SLAIN2Q9P270 581 aa34.06■■■■□ 3.04
VAPA-205ENST00000578314 C19orf44Q9H6X5 657 aa34.05■■■■□ 3.04
VAPA-205ENST00000578314 HRCP23327 699 aa34.03■■■■□ 3.04
VAPA-205ENST00000578314 C14orf37Q86TY3 774 aa34.03■■■■□ 3.04
VAPA-205ENST00000578314 SPATA31E1Q6ZUB1 1445 aa34.03■■■■□ 3.04
VAPA-205ENST00000578314 PHF23Q9BUL5 403 aaPredicted RBP34.02■■■■□ 3.04
VAPA-205ENST00000578314 RGL3Q3MIN7 710 aa33.99■■■■□ 3.03
VAPA-205ENST00000578314 CADPS2Q86UW7 1296 aa33.99■■■■□ 3.03
VAPA-205ENST00000578314 XRN1Q8IZH2 1706 aaKnown RBP33.98■■■■□ 3.03
VAPA-205ENST00000578314 ATF3P18847 181 aa33.95■■■■□ 3.03
VAPA-205ENST00000578314 ANKRD30BQ9BXX2 1392 aa33.94■■■■□ 3.02
VAPA-205ENST00000578314 PPLO60437 1756 aa33.93■■■■□ 3.02
VAPA-205ENST00000578314 ADGRF5Q8IZF2 1346 aa33.93■■■■□ 3.02
VAPA-205ENST00000578314 SIPA1L2Q9P2F8 1722 aaPredicted RBP33.93■■■■□ 3.02
VAPA-205ENST00000578314 PHLPP1O60346 1717 aa33.89■■■■□ 3.02
VAPA-205ENST00000578314 DCCP43146 1447 aa33.88■■■■□ 3.01
VAPA-205ENST00000578314 SETD1AO15047 1707 aaKnown RBP33.85■■■■□ 3.01
VAPA-205ENST00000578314 PRAG1Q86YV5 1406 aa33.85■■■■□ 3.01
VAPA-205ENST00000578314 PTCH1Q13635 1447 aa33.84■■■■□ 3.01
VAPA-205ENST00000578314 ROBO2Q9HCK4 1378 aa33.82■■■■□ 3
VAPA-205ENST00000578314 ADGRL3Q9HAR2 1447 aa33.81■■■■□ 3
VAPA-205ENST00000578314 COL16A1Q07092 1604 aaPredicted RBP33.79■■■■□ 3
VAPA-205ENST00000578314 RGS17Q9UGC6 210 aaPredicted RBP33.79■■■■□ 3
VAPA-205ENST00000578314 PIK3C2GO75747 1445 aa33.78■■■■□ 3
VAPA-205ENST00000578314 JCADQ9P266 1359 aa33.77■■■■□ 3
VAPA-205ENST00000578314 IFT172Q9UG01 1749 aa33.77■■■■□ 3
VAPA-205ENST00000578314 BRINP3Q76B58 766 aa33.76■■■□□ 2.99
VAPA-205ENST00000578314 MST1RQ04912 1400 aa33.75■■■□□ 2.99
VAPA-205ENST00000578314 AHDC1Q5TGY3 1603 aaPredicted RBP33.75■■■□□ 2.99
VAPA-205ENST00000578314 C14orf93Q9H972 538 aaKnown RBP33.72■■■□□ 2.99
VAPA-205ENST00000578314 NRXN1Q9ULB1 1477 aa33.71■■■□□ 2.99
VAPA-205ENST00000578314 LRPPRCP42704 1394 aaKnown RBP33.71■■■□□ 2.99
VAPA-205ENST00000578314 TMEM132EQ6IEE7 984 aa33.7■■■□□ 2.99
VAPA-205ENST00000578314 MYOM2P54296 1465 aa33.69■■■□□ 2.98
VAPA-205ENST00000578314 ABCC11Q96J66 1382 aa33.69■■■□□ 2.98
VAPA-205ENST00000578314 TECPR2O15040 1411 aa33.68■■■□□ 2.98
VAPA-205ENST00000578314 STK26Q9P289 416 aa33.67■■■□□ 2.98
VAPA-205ENST00000578314 NALCNQ8IZF0 1738 aa33.67■■■□□ 2.98
VAPA-205ENST00000578314 ASXL1Q8IXJ9 1541 aa33.64■■■□□ 2.98
VAPA-205ENST00000578314 CFAP70Q5T0N1 1121 aa33.64■■■□□ 2.98
VAPA-205ENST00000578314 SIRT1Q96EB6 747 aa33.62■■■□□ 2.97
VAPA-205ENST00000578314 C1orf167Q5SNV9 1468 aa33.62■■■□□ 2.97
VAPA-205ENST00000578314 YTHDC2Q9H6S0 1430 aaKnown RBP33.62■■■□□ 2.97
VAPA-205ENST00000578314 SHPRHQ149N8 1683 aa33.61■■■□□ 2.97
VAPA-205ENST00000578314 WAPLQ7Z5K2 1190 aa33.61■■■□□ 2.97
VAPA-205ENST00000578314 STAC3Q96MF2 364 aa33.61■■■□□ 2.97
VAPA-205ENST00000578314 SPATA31A6Q5VVP1 1343 aa33.6■■■□□ 2.97
VAPA-205ENST00000578314 POTEAQ6S8J7 498 aa33.59■■■□□ 2.97
VAPA-205ENST00000578314 NHSL1Q5SYE7 1610 aa33.58■■■□□ 2.97
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms