RNA–Protein interactions for RNA: ENST00000578208.1

GGA3-204, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 3

Gene GGA3, Length 478 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-204ENST00000578208 BCANQ96GW7 911 aa17.32■□□□□ 0.36
GGA3-204ENST00000578208 MYO5BQ9ULV0 1848 aa17.31■□□□□ 0.36
GGA3-204ENST00000578208 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.31■□□□□ 0.36
GGA3-204ENST00000578208 ZFYVE9O95405 1425 aa17.3■□□□□ 0.36
GGA3-204ENST00000578208 ZNF326Q5BKZ1 582 aaKnown RBP17.27■□□□□ 0.36
GGA3-204ENST00000578208 CLTCL1P53675 1640 aa17.27■□□□□ 0.36
GGA3-204ENST00000578208 PLEKHG1Q9ULL1 1385 aa17.27■□□□□ 0.35
GGA3-204ENST00000578208 RAB3GAP2Q9H2M9 1393 aa17.25■□□□□ 0.35
GGA3-204ENST00000578208 KIF1BO60333 1816 aa17.24■□□□□ 0.35
GGA3-204ENST00000578208 SLC26A8Q96RN1 970 aa17.24■□□□□ 0.35
GGA3-204ENST00000578208 MPHOSPH9Q99550 1183 aa17.23■□□□□ 0.35
GGA3-204ENST00000578208 SENP3Q9H4L4 574 aaPredicted RBP17.23■□□□□ 0.35
GGA3-204ENST00000578208 UBAP1LF5GYI3 381 aa17.22■□□□□ 0.35
GGA3-204ENST00000578208 NUTM2DQ5VT03 806 aaPredicted RBP17.22■□□□□ 0.35
GGA3-204ENST00000578208 STRCP1A6NGW2 1772 aa17.21■□□□□ 0.35
GGA3-204ENST00000578208 DIP2AQ14689 1571 aa17.21■□□□□ 0.35
GGA3-204ENST00000578208 CCDC144AA2RUR9 1427 aa17.21■□□□□ 0.34
GGA3-204ENST00000578208 FOXD1Q16676 465 aa17.2■□□□□ 0.34
GGA3-204ENST00000578208 LRRC7Q96NW7 1537 aa17.2■□□□□ 0.34
GGA3-204ENST00000578208 KCNA6P17658 529 aa17.18■□□□□ 0.34
GGA3-204ENST00000578208 NKTRP30414 1462 aaKnown RBP17.18■□□□□ 0.34
GGA3-204ENST00000578208 TOM1O60784 492 aa17.17■□□□□ 0.34
GGA3-204ENST00000578208 NWD1Q149M9 1564 aa17.17■□□□□ 0.34
GGA3-204ENST00000578208 TBX22Q9Y458 520 aa17.17■□□□□ 0.34
GGA3-204ENST00000578208 NEXMIFQ5QGS0 1516 aa17.16■□□□□ 0.34
GGA3-204ENST00000578208 SCAF1Q9H7N4 1312 aaKnown RBP17.16■□□□□ 0.34
GGA3-204ENST00000578208 ADAMTS13Q76LX8 1427 aa17.15■□□□□ 0.34
GGA3-204ENST00000578208 RPGRIP1LQ68CZ1 1315 aa17.15■□□□□ 0.34
GGA3-204ENST00000578208 SETBP1Q9Y6X0 1596 aa17.15■□□□□ 0.34
GGA3-204ENST00000578208 HRCP23327 699 aa17.14■□□□□ 0.33
GGA3-204ENST00000578208 PROSER2Q86WR7 435 aaPredicted RBP17.14■□□□□ 0.33
GGA3-204ENST00000578208 PIK3R4Q99570 1358 aa17.14■□□□□ 0.33
GGA3-204ENST00000578208 VGFO15240 615 aaPredicted RBP17.13■□□□□ 0.33
GGA3-204ENST00000578208 TMEM94Q12767 1356 aa17.12■□□□□ 0.33
GGA3-204ENST00000578208 CHD2O14647 1828 aaKnown RBP17.12■□□□□ 0.33
GGA3-204ENST00000578208 PIP4K2BP78356 416 aa17.11■□□□□ 0.33
GGA3-204ENST00000578208 NRXN3Q9Y4C0 1643 aa17.1■□□□□ 0.33
GGA3-204ENST00000578208 PPLO60437 1756 aa17.08■□□□□ 0.33
GGA3-204ENST00000578208 RGL3Q3MIN7 710 aa17.08■□□□□ 0.32
GGA3-204ENST00000578208 XIRP1Q702N8 1843 aaKnown RBP17.07■□□□□ 0.32
GGA3-204ENST00000578208 SPATA31E1Q6ZUB1 1445 aa17.07■□□□□ 0.32
GGA3-204ENST00000578208 MSH6P52701 1360 aa17.07■□□□□ 0.32
GGA3-204ENST00000578208 ANKRD30BQ9BXX2 1392 aa17.06■□□□□ 0.32
GGA3-204ENST00000578208 C14orf37Q86TY3 774 aa17.06■□□□□ 0.32
GGA3-204ENST00000578208 AMOTL2Q9Y2J4 779 aa17.06■□□□□ 0.32
GGA3-204ENST00000578208 RBM33Q96EV2 1170 aaKnown RBP17.05■□□□□ 0.32
GGA3-204ENST00000578208 NCOA3Q9Y6Q9 1424 aa17.04■□□□□ 0.32
GGA3-204ENST00000578208 XRN1Q8IZH2 1706 aaKnown RBP17.03■□□□□ 0.32
GGA3-204ENST00000578208 IFT172Q9UG01 1749 aa17.03■□□□□ 0.32
GGA3-204ENST00000578208 PTPRUQ92729 1446 aa17.03■□□□□ 0.32
GGA3-204ENST00000578208 ALKQ9UM73 1620 aa17.03■□□□□ 0.32
GGA3-204ENST00000578208 METP08581 1390 aa17.02■□□□□ 0.32
GGA3-204ENST00000578208 ADGRF5Q8IZF2 1346 aa16.99■□□□□ 0.31
GGA3-204ENST00000578208 SETD1AO15047 1707 aaKnown RBP16.99■□□□□ 0.31
GGA3-204ENST00000578208 HSPA1LP34931 641 aa16.98■□□□□ 0.31
GGA3-204ENST00000578208 ATF3P18847 181 aa16.97■□□□□ 0.31
GGA3-204ENST00000578208 MYOM2P54296 1465 aa16.97■□□□□ 0.31
GGA3-204ENST00000578208 PIK3C2GO75747 1445 aa16.96■□□□□ 0.31
GGA3-204ENST00000578208 PTCH1Q13635 1447 aa16.96■□□□□ 0.31
GGA3-204ENST00000578208 CADPS2Q86UW7 1296 aa16.96■□□□□ 0.31
GGA3-204ENST00000578208 C19orf44Q9H6X5 657 aa16.96■□□□□ 0.31
GGA3-204ENST00000578208 FAM135BQ49AJ0 1406 aa16.96■□□□□ 0.3
GGA3-204ENST00000578208 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.94■□□□□ 0.3
GGA3-204ENST00000578208 TRIM26Q12899 539 aaPredicted RBP16.94■□□□□ 0.3
GGA3-204ENST00000578208 DCCP43146 1447 aa16.94■□□□□ 0.3
GGA3-204ENST00000578208 ROBO1Q9Y6N7 1651 aa16.94■□□□□ 0.3
GGA3-204ENST00000578208 LAMC1P11047 1609 aa16.93■□□□□ 0.3
GGA3-204ENST00000578208 SLAIN2Q9P270 581 aa16.93■□□□□ 0.3
GGA3-204ENST00000578208 PRAG1Q86YV5 1406 aa16.93■□□□□ 0.3
GGA3-204ENST00000578208 ADGRL3Q9HAR2 1447 aa16.93■□□□□ 0.3
GGA3-204ENST00000578208 NRXN1Q9ULB1 1477 aa16.92■□□□□ 0.3
GGA3-204ENST00000578208 ROBO2Q9HCK4 1378 aa16.9■□□□□ 0.3
GGA3-204ENST00000578208 STAC3Q96MF2 364 aa16.9■□□□□ 0.3
GGA3-204ENST00000578208 NALCNQ8IZF0 1738 aa16.9■□□□□ 0.3
GGA3-204ENST00000578208 LRPPRCP42704 1394 aaKnown RBP16.89■□□□□ 0.3
GGA3-204ENST00000578208 DCAF11Q8TEB1 546 aa16.89■□□□□ 0.29
GGA3-204ENST00000578208 STK26Q9P289 416 aa16.89■□□□□ 0.29
GGA3-204ENST00000578208 KDM2AQ9Y2K7 1162 aa16.89■□□□□ 0.29
GGA3-204ENST00000578208 ASXL1Q8IXJ9 1541 aa16.88■□□□□ 0.29
GGA3-204ENST00000578208 C14orf93Q9H972 538 aaKnown RBP16.88■□□□□ 0.29
GGA3-204ENST00000578208 KNDC1Q76NI1 1749 aa16.87■□□□□ 0.29
GGA3-204ENST00000578208 TMEM132EQ6IEE7 984 aa16.87■□□□□ 0.29
GGA3-204ENST00000578208 DHX57Q6P158 1386 aaKnown RBP16.87■□□□□ 0.29
GGA3-204ENST00000578208 DISP3Q9P2K9 1392 aa16.87■□□□□ 0.29
GGA3-204ENST00000578208 TECPR2O15040 1411 aa16.87■□□□□ 0.29
GGA3-204ENST00000578208 YTHDC2Q9H6S0 1430 aaKnown RBP16.87■□□□□ 0.29
GGA3-204ENST00000578208 CFAP70Q5T0N1 1121 aa16.86■□□□□ 0.29
GGA3-204ENST00000578208 ABCC11Q96J66 1382 aa16.86■□□□□ 0.29
GGA3-204ENST00000578208 MST1RQ04912 1400 aa16.84■□□□□ 0.29
GGA3-204ENST00000578208 PHLPP1O60346 1717 aa16.84■□□□□ 0.29
GGA3-204ENST00000578208 MED1Q15648 1581 aaPredicted RBP16.81■□□□□ 0.28
GGA3-204ENST00000578208 AHDC1Q5TGY3 1603 aaPredicted RBP16.81■□□□□ 0.28
GGA3-204ENST00000578208 CDC42BPGQ6DT37 1551 aa16.81■□□□□ 0.28
GGA3-204ENST00000578208 BRINP3Q76B58 766 aa16.8■□□□□ 0.28
GGA3-204ENST00000578208 WAPLQ7Z5K2 1190 aa16.8■□□□□ 0.28
GGA3-204ENST00000578208 SIRT1Q96EB6 747 aa16.79■□□□□ 0.28
GGA3-204ENST00000578208 C1orf167Q5SNV9 1468 aa16.79■□□□□ 0.28
GGA3-204ENST00000578208 ADGRB1O14514 1584 aa16.78■□□□□ 0.28
GGA3-204ENST00000578208 POGKQ9P215 609 aa16.78■□□□□ 0.28
GGA3-204ENST00000578208 DLC1Q96QB1 1528 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms