RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 TMEM2Q9UHN6 1383 aa12.47□□□□□ -0.41
NUP88-211ENST00000575976 UBAP1LF5GYI3 381 aa12.47□□□□□ -0.41
NUP88-211ENST00000575976 NEUROD1Q13562 356 aa12.47□□□□□ -0.41
NUP88-211ENST00000575976 SPATA31E1Q6ZUB1 1445 aa12.46□□□□□ -0.41
NUP88-211ENST00000575976 NCKAP5LQ9HCH0 1330 aa12.46□□□□□ -0.41
NUP88-211ENST00000575976 KDM5AP29375 1690 aaKnown RBP12.46□□□□□ -0.41
NUP88-211ENST00000575976 LTKP29376 864 aa12.46□□□□□ -0.41
NUP88-211ENST00000575976 TXNDC2Q86VQ3 553 aa12.46□□□□□ -0.41
NUP88-211ENST00000575976 KIF1BO60333 1816 aa12.46□□□□□ -0.42
NUP88-211ENST00000575976 ARHGAP23Q9P227 1491 aa12.46□□□□□ -0.42
NUP88-211ENST00000575976 NUTM2DQ5VT03 806 aaPredicted RBP12.45□□□□□ -0.42
NUP88-211ENST00000575976 ANKLE2Q86XL3 938 aa12.45□□□□□ -0.42
NUP88-211ENST00000575976 MYO5BQ9ULV0 1848 aa12.45□□□□□ -0.42
NUP88-211ENST00000575976 SLIT1O75093 1534 aa12.45□□□□□ -0.42
NUP88-211ENST00000575976 RIMS2Q9UQ26 1411 aa12.45□□□□□ -0.42
NUP88-211ENST00000575976 EID1Q9Y6B2 187 aa12.44□□□□□ -0.42
NUP88-211ENST00000575976 ZFYVE9O95405 1425 aa12.44□□□□□ -0.42
NUP88-211ENST00000575976 RPGRIP1LQ68CZ1 1315 aa12.43□□□□□ -0.42
NUP88-211ENST00000575976 HDGFP51858 240 aaKnown RBP12.43□□□□□ -0.42
NUP88-211ENST00000575976 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.43□□□□□ -0.42
NUP88-211ENST00000575976 NEURL4Q96JN8 1562 aa12.43□□□□□ -0.42
NUP88-211ENST00000575976 CLSPNQ9HAW4 1339 aa12.42□□□□□ -0.42
NUP88-211ENST00000575976 SCAF11Q99590 1463 aaKnown RBP12.41□□□□□ -0.42
NUP88-211ENST00000575976 PPP1R15AO75807 674 aaPredicted RBP12.41□□□□□ -0.42
NUP88-211ENST00000575976 NEXMIFQ5QGS0 1516 aa12.41□□□□□ -0.42
NUP88-211ENST00000575976 MED1Q15648 1581 aaPredicted RBP12.39□□□□□ -0.43
NUP88-211ENST00000575976 VGFO15240 615 aaPredicted RBP12.39□□□□□ -0.43
NUP88-211ENST00000575976 DCAF11Q8TEB1 546 aa12.39□□□□□ -0.43
NUP88-211ENST00000575976 L3MBTL2Q969R5 705 aa12.39□□□□□ -0.43
NUP88-211ENST00000575976 KDM2AQ9Y2K7 1162 aa12.39□□□□□ -0.43
NUP88-211ENST00000575976 ADGRF5Q8IZF2 1346 aa12.38□□□□□ -0.43
NUP88-211ENST00000575976 NPHP4O75161 1426 aaPredicted RBP12.38□□□□□ -0.43
NUP88-211ENST00000575976 BCANQ96GW7 911 aa12.38□□□□□ -0.43
NUP88-211ENST00000575976 PLEKHG1Q9ULL1 1385 aa12.38□□□□□ -0.43
NUP88-211ENST00000575976 MED14O60244 1454 aa12.38□□□□□ -0.43
NUP88-211ENST00000575976 POLR1AO95602 1720 aaPredicted RBP12.37□□□□□ -0.43
NUP88-211ENST00000575976 PPLO60437 1756 aa12.36□□□□□ -0.43
NUP88-211ENST00000575976 TONSLQ96HA7 1378 aa12.36□□□□□ -0.43
NUP88-211ENST00000575976 SLC26A8Q96RN1 970 aa12.36□□□□□ -0.43
NUP88-211ENST00000575976 SCAF1Q9H7N4 1312 aaKnown RBP12.36□□□□□ -0.43
NUP88-211ENST00000575976 IFT172Q9UG01 1749 aa12.35□□□□□ -0.43
NUP88-211ENST00000575976 TOM1O60784 492 aa12.35□□□□□ -0.43
NUP88-211ENST00000575976 STAC3Q96MF2 364 aa12.35□□□□□ -0.43
NUP88-211ENST00000575976 ZNF335Q9H4Z2 1342 aaPredicted RBP12.35□□□□□ -0.43
NUP88-211ENST00000575976 MYOM2P54296 1465 aa12.34□□□□□ -0.43
NUP88-211ENST00000575976 HSPA1LP34931 641 aa12.34□□□□□ -0.43
NUP88-211ENST00000575976 ADAMTS13Q76LX8 1427 aa12.34□□□□□ -0.43
NUP88-211ENST00000575976 TBX22Q9Y458 520 aa12.33□□□□□ -0.44
NUP88-211ENST00000575976 NRXN1Q9ULB1 1477 aa12.33□□□□□ -0.44
NUP88-211ENST00000575976 IQGAP1P46940 1657 aa12.32□□□□□ -0.44
NUP88-211ENST00000575976 TIMELESSQ9UNS1 1208 aa12.32□□□□□ -0.44
NUP88-211ENST00000575976 SETBP1Q9Y6X0 1596 aa12.31□□□□□ -0.44
NUP88-211ENST00000575976 PIK3C2GO75747 1445 aa12.31□□□□□ -0.44
NUP88-211ENST00000575976 NRXN3Q9Y4C0 1643 aa12.31□□□□□ -0.44
NUP88-211ENST00000575976 PIP4K2BP78356 416 aa12.31□□□□□ -0.44
NUP88-211ENST00000575976 CFAP70Q5T0N1 1121 aa12.31□□□□□ -0.44
NUP88-211ENST00000575976 C14orf93Q9H972 538 aaKnown RBP12.31□□□□□ -0.44
NUP88-211ENST00000575976 NBPF8Q3BBV2 869 aa12.3□□□□□ -0.44
NUP88-211ENST00000575976 ALKQ9UM73 1620 aa12.29□□□□□ -0.44
NUP88-211ENST00000575976 PRAG1Q86YV5 1406 aa12.29□□□□□ -0.44
NUP88-211ENST00000575976 METP08581 1390 aa12.29□□□□□ -0.44
NUP88-211ENST00000575976 TMEM132EQ6IEE7 984 aa12.28□□□□□ -0.44
NUP88-211ENST00000575976 DIP2AQ14689 1571 aa12.27□□□□□ -0.44
NUP88-211ENST00000575976 PTPRUQ92729 1446 aa12.27□□□□□ -0.45
NUP88-211ENST00000575976 KCNA6P17658 529 aa12.26□□□□□ -0.45
NUP88-211ENST00000575976 NBPF1Q3BBV0 1214 aa12.26□□□□□ -0.45
NUP88-211ENST00000575976 PIK3R4Q99570 1358 aa12.26□□□□□ -0.45
NUP88-211ENST00000575976 CPS1P31327 1500 aa12.26□□□□□ -0.45
NUP88-211ENST00000575976 SETD1AO15047 1707 aaKnown RBP12.25□□□□□ -0.45
NUP88-211ENST00000575976 AMOTL2Q9Y2J4 779 aa12.25□□□□□ -0.45
NUP88-211ENST00000575976 ASXL1Q8IXJ9 1541 aa12.24□□□□□ -0.45
NUP88-211ENST00000575976 STK26Q9P289 416 aa12.24□□□□□ -0.45
NUP88-211ENST00000575976 LAMC1P11047 1609 aa12.22□□□□□ -0.45
NUP88-211ENST00000575976 ADGRB1O14514 1584 aa12.22□□□□□ -0.45
NUP88-211ENST00000575976 LRPPRCP42704 1394 aaKnown RBP12.22□□□□□ -0.45
NUP88-211ENST00000575976 YTHDC2Q9H6S0 1430 aaKnown RBP12.21□□□□□ -0.45
NUP88-211ENST00000575976 CHD2O14647 1828 aaKnown RBP12.21□□□□□ -0.45
NUP88-211ENST00000575976 STRCP1A6NGW2 1772 aa12.21□□□□□ -0.45
NUP88-211ENST00000575976 KIAA1210Q9ULL0 1709 aa12.21□□□□□ -0.45
NUP88-211ENST00000575976 TRAK1Q9UPV9 953 aa12.21□□□□□ -0.45
NUP88-211ENST00000575976 TRPM1Q7Z4N2 1603 aa12.21□□□□□ -0.46
NUP88-211ENST00000575976 NWD1Q149M9 1564 aa12.21□□□□□ -0.46
NUP88-211ENST00000575976 ROCK2O75116 1388 aaKnown RBP12.2□□□□□ -0.46
NUP88-211ENST00000575976 ABCC11Q96J66 1382 aa12.2□□□□□ -0.46
NUP88-211ENST00000575976 PROSER2Q86WR7 435 aaPredicted RBP12.2□□□□□ -0.46
NUP88-211ENST00000575976 RBM33Q96EV2 1170 aaKnown RBP12.2□□□□□ -0.46
NUP88-211ENST00000575976 RALGAPBQ86X10 1494 aa12.2□□□□□ -0.46
NUP88-211ENST00000575976 XRN1Q8IZH2 1706 aaKnown RBP12.19□□□□□ -0.46
NUP88-211ENST00000575976 GPRASP1Q5JY77 1395 aa12.18□□□□□ -0.46
NUP88-211ENST00000575976 ROBO2Q9HCK4 1378 aa12.18□□□□□ -0.46
NUP88-211ENST00000575976 WAPLQ7Z5K2 1190 aa12.18□□□□□ -0.46
NUP88-211ENST00000575976 CARD11Q9BXL7 1154 aa12.18□□□□□ -0.46
NUP88-211ENST00000575976 NKTRP30414 1462 aaKnown RBP12.18□□□□□ -0.46
NUP88-211ENST00000575976 LRRC7Q96NW7 1537 aa12.17□□□□□ -0.46
NUP88-211ENST00000575976 SIRT1Q96EB6 747 aa12.17□□□□□ -0.46
NUP88-211ENST00000575976 RGS17Q9UGC6 210 aaPredicted RBP12.17□□□□□ -0.46
NUP88-211ENST00000575976 TECPR2O15040 1411 aa12.17□□□□□ -0.46
NUP88-211ENST00000575976 TMEM94Q12767 1356 aa12.17□□□□□ -0.46
NUP88-211ENST00000575976 PLEKHH1Q9ULM0 1364 aa12.17□□□□□ -0.46
NUP88-211ENST00000575976 PRAM1Q96QH2 718 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms