RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 PANK1Q8TE04 598 aa19.03■□□□□ 0.64
CIITA-204ENST00000570546 PPP2R1AP30153 589 aa19.03■□□□□ 0.64
CIITA-204ENST00000570546 FOXD4L5Q5VV16 416 aaPredicted RBP19.02■□□□□ 0.64
CIITA-204ENST00000570546 FOXD4L4Q8WXT5 416 aaPredicted RBP19.02■□□□□ 0.64
CIITA-204ENST00000570546 NAIPQ13075 1403 aa19.02■□□□□ 0.64
CIITA-204ENST00000570546 CSPP1Q1MSJ5 1256 aa19.01■□□□□ 0.63
CIITA-204ENST00000570546 PNISRQ8TF01 805 aaKnown RBP19.01■□□□□ 0.63
CIITA-204ENST00000570546 EID1Q9Y6B2 187 aa19.01■□□□□ 0.63
CIITA-204ENST00000570546 C9orf84Q5VXU9 1444 aa19.01■□□□□ 0.63
CIITA-204ENST00000570546 GNL2Q13823 731 aaKnown RBP19.01■□□□□ 0.63
CIITA-204ENST00000570546 NBPF1Q3BBV0 1214 aa19.01■□□□□ 0.63
CIITA-204ENST00000570546 DDX49Q9Y6V7 483 aaKnown RBP19.01■□□□□ 0.63
CIITA-204ENST00000570546 AAMPQ13685 434 aa19■□□□□ 0.63
CIITA-204ENST00000570546 LTV1Q96GA3 475 aaPredicted RBP18.99■□□□□ 0.63
CIITA-204ENST00000570546 PHF14O94880 888 aa18.99■□□□□ 0.63
CIITA-204ENST00000570546 CSB-PGBD3P0DP91 1061 aa18.99■□□□□ 0.63
CIITA-204ENST00000570546 NFKBIBQ15653 356 aa18.99■□□□□ 0.63
CIITA-204ENST00000570546 CHMP5Q9NZZ3 219 aa18.99■□□□□ 0.63
CIITA-204ENST00000570546 PRG4Q92954 1404 aaPredicted RBP18.99■□□□□ 0.63
CIITA-204ENST00000570546 RILPL2Q969X0 211 aa18.98■□□□□ 0.63
CIITA-204ENST00000570546 DNMBPQ6XZF7 1577 aa18.98■□□□□ 0.63
CIITA-204ENST00000570546 RSPH6AQ9H0K4 717 aa18.98■□□□□ 0.63
CIITA-204ENST00000570546 NPHP1O15259 732 aa18.98■□□□□ 0.63
CIITA-204ENST00000570546 SYNJ2O15056 1496 aa18.98■□□□□ 0.63
CIITA-204ENST00000570546 HSP90B1P14625 803 aaKnown RBP18.97■□□□□ 0.63
CIITA-204ENST00000570546 TROQ12816 1431 aaPredicted RBP18.97■□□□□ 0.63
CIITA-204ENST00000570546 KIF16BQ96L93 1317 aa18.97■□□□□ 0.63
CIITA-204ENST00000570546 API5Q9BZZ5 524 aaKnown RBP18.96■□□□□ 0.63
CIITA-204ENST00000570546 MAP3K1Q13233 1512 aa18.96■□□□□ 0.63
CIITA-204ENST00000570546 ARID3AQ99856 593 aa18.95■□□□□ 0.62
CIITA-204ENST00000570546 C22orf23Q9BZE7 217 aa18.94■□□□□ 0.62
CIITA-204ENST00000570546 CHMP3Q9Y3E7 222 aa18.94■□□□□ 0.62
CIITA-204ENST00000570546 TRHP20396 242 aaPredicted RBP18.94■□□□□ 0.62
CIITA-204ENST00000570546 CDK13Q14004 1512 aaKnown RBP18.93■□□□□ 0.62
CIITA-204ENST00000570546 CFAP70Q5T0N1 1121 aa18.92■□□□□ 0.62
CIITA-204ENST00000570546 ZNF330Q9Y3S2 320 aaPredicted RBP18.92■□□□□ 0.62
CIITA-204ENST00000570546 EPRSP07814 1512 aaKnown RBP18.92■□□□□ 0.62
CIITA-204ENST00000570546 ROCK1Q13464 1354 aa18.92■□□□□ 0.62
CIITA-204ENST00000570546 REC8O95072 547 aa18.92■□□□□ 0.62
CIITA-204ENST00000570546 TCP11L2Q8N4U5 519 aa18.92■□□□□ 0.62
CIITA-204ENST00000570546 LNPKQ9C0E8 428 aa18.92■□□□□ 0.62
CIITA-204ENST00000570546 GGNBP2Q9H3C7 697 aa18.92■□□□□ 0.62
CIITA-204ENST00000570546 MTHFSP49914 203 aa18.91■□□□□ 0.62
CIITA-204ENST00000570546 CABP2Q9NPB3 220 aa18.91■□□□□ 0.62
CIITA-204ENST00000570546 MRC2Q9UBG0 1479 aa18.91■□□□□ 0.62
CIITA-204ENST00000570546 GORABQ5T7V8 394 aa18.91■□□□□ 0.62
CIITA-204ENST00000570546 TMEM132EQ6IEE7 984 aa18.91■□□□□ 0.62
CIITA-204ENST00000570546 PTPN23Q9H3S7 1636 aa18.91■□□□□ 0.62
CIITA-204ENST00000570546 ERBINQ96RT1 1412 aa18.91■□□□□ 0.62
CIITA-204ENST00000570546 CC2D2AQ9P2K1 1620 aa18.9■□□□□ 0.62
CIITA-204ENST00000570546 GNAI1P63096 354 aa18.9■□□□□ 0.62
CIITA-204ENST00000570546 ABCA10Q8WWZ4 1543 aa18.9■□□□□ 0.62
CIITA-204ENST00000570546 IFT140Q96RY7 1462 aa18.9■□□□□ 0.62
CIITA-204ENST00000570546 BACH2Q9BYV9 841 aa18.89■□□□□ 0.61
CIITA-204ENST00000570546 AFAP1Q8N556 730 aa18.88■□□□□ 0.61
CIITA-204ENST00000570546 TPM4P67936 248 aa18.88■□□□□ 0.61
CIITA-204ENST00000570546 SCAPERQ9BY12 1400 aa18.88■□□□□ 0.61
CIITA-204ENST00000570546 HMOX1P09601 288 aa18.88■□□□□ 0.61
CIITA-204ENST00000570546 TULP1O00294 542 aaPredicted RBP18.87■□□□□ 0.61
CIITA-204ENST00000570546 PDE3AQ14432 1141 aa18.87■□□□□ 0.61
CIITA-204ENST00000570546 FOXD4L6Q3SYB3 417 aaPredicted RBP18.87■□□□□ 0.61
CIITA-204ENST00000570546 FOXD4L3Q6VB84 417 aaPredicted RBP18.87■□□□□ 0.61
CIITA-204ENST00000570546 BCAR3O75815 825 aa18.86■□□□□ 0.61
CIITA-204ENST00000570546 INTS3Q68E01 1043 aaKnown RBP18.86■□□□□ 0.61
CIITA-204ENST00000570546 CUL7Q14999 1698 aa18.85■□□□□ 0.61
CIITA-204ENST00000570546 ATP6V1DQ9Y5K8 247 aa18.85■□□□□ 0.61
CIITA-204ENST00000570546 C11orf95C9JLR9 678 aaPredicted RBP18.85■□□□□ 0.61
CIITA-204ENST00000570546 PDZRN3Q9UPQ7 1066 aa18.85■□□□□ 0.61
CIITA-204ENST00000570546 BICRAQ9NZM4 1560 aa18.85■□□□□ 0.61
CIITA-204ENST00000570546 SNAPC4Q5SXM2 1469 aa18.85■□□□□ 0.61
CIITA-204ENST00000570546 TAF7LQ5H9L4 462 aa18.85■□□□□ 0.61
CIITA-204ENST00000570546 ANKRD30BQ9BXX2 1392 aa18.85■□□□□ 0.61
CIITA-204ENST00000570546 PLEKHH2Q8IVE3 1493 aa18.84■□□□□ 0.61
CIITA-204ENST00000570546 HSP90AA2PQ14568 343 aaPredicted RBP18.84■□□□□ 0.61
CIITA-204ENST00000570546 DIAPH3Q9NSV4 1193 aa18.83■□□□□ 0.61
CIITA-204ENST00000570546 BIVM-ERCC5R4GMW8 1640 aa18.82■□□□□ 0.6
CIITA-204ENST00000570546 NECTIN2Q92692 538 aa18.82■□□□□ 0.6
CIITA-204ENST00000570546 CDC45O75419 566 aa18.81■□□□□ 0.6
CIITA-204ENST00000570546 C1orf141Q5JVX7 400 aa18.81■□□□□ 0.6
CIITA-204ENST00000570546 KIF3AQ9Y496 699 aa18.81■□□□□ 0.6
CIITA-204ENST00000570546 IQGAP2Q13576 1575 aa18.81■□□□□ 0.6
CIITA-204ENST00000570546 EIF2S2P20042 333 aaKnown RBP18.81■□□□□ 0.6
CIITA-204ENST00000570546 EXOSC9Q06265 439 aaKnown RBP18.81■□□□□ 0.6
CIITA-204ENST00000570546 NUCB2P80303 420 aa18.81■□□□□ 0.6
CIITA-204ENST00000570546 NINLQ9Y2I6 1382 aa18.8■□□□□ 0.6
CIITA-204ENST00000570546 TEFQ10587 303 aa18.8■□□□□ 0.6
CIITA-204ENST00000570546 RUFY2Q8WXA3 655 aa18.8■□□□□ 0.6
CIITA-204ENST00000570546 H3BQV1 296 aa18.8■□□□□ 0.6
CIITA-204ENST00000570546 FKBP5Q13451 457 aaPredicted RBP18.8■□□□□ 0.6
CIITA-204ENST00000570546 IFFO2Q5TF58 517 aa18.8■□□□□ 0.6
CIITA-204ENST00000570546 ANO2Q9NQ90 1003 aa18.79■□□□□ 0.6
CIITA-204ENST00000570546 FRAT2O75474 233 aaPredicted RBP18.79■□□□□ 0.6
CIITA-204ENST00000570546 ABCC5O15440 1437 aa18.79■□□□□ 0.6
CIITA-204ENST00000570546 MCTP1Q6DN14 999 aa18.79■□□□□ 0.6
CIITA-204ENST00000570546 CAMSAP2Q08AD1 1489 aa18.78■□□□□ 0.6
CIITA-204ENST00000570546 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.78■□□□□ 0.6
CIITA-204ENST00000570546 TSPYL4Q9UJ04 414 aa18.78■□□□□ 0.6
CIITA-204ENST00000570546 PEG3Q9GZU2 1588 aa18.78■□□□□ 0.6
CIITA-204ENST00000570546 NCOA1Q15788 1441 aa18.77■□□□□ 0.6
CIITA-204ENST00000570546 SLC12A5Q9H2X9 1139 aa18.77■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms