RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-231ENST00000568422 SLC26A8Q96RN1 970 aa25.84■■□□□ 1.73
CLN3-231ENST00000568422 ZFYVE9O95405 1425 aa25.82■■□□□ 1.72
CLN3-231ENST00000568422 NWD1Q149M9 1564 aa25.82■■□□□ 1.72
CLN3-231ENST00000568422 NKTRP30414 1462 aaKnown RBP25.81■■□□□ 1.72
CLN3-231ENST00000568422 TMEM94Q12767 1356 aa25.81■■□□□ 1.72
CLN3-231ENST00000568422 BCANQ96GW7 911 aa25.8■■□□□ 1.72
CLN3-231ENST00000568422 PLEKHG1Q9ULL1 1385 aa25.8■■□□□ 1.72
CLN3-231ENST00000568422 PROSER2Q86WR7 435 aaPredicted RBP25.79■■□□□ 1.72
CLN3-231ENST00000568422 RIMS2Q9UQ26 1411 aa25.79■■□□□ 1.72
CLN3-231ENST00000568422 CHD2O14647 1828 aaKnown RBP25.77■■□□□ 1.72
CLN3-231ENST00000568422 PPP1R15AO75807 674 aaPredicted RBP25.77■■□□□ 1.72
CLN3-231ENST00000568422 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.77■■□□□ 1.72
CLN3-231ENST00000568422 FAM135BQ49AJ0 1406 aa25.77■■□□□ 1.72
CLN3-231ENST00000568422 NUP155O75694 1391 aa25.76■■□□□ 1.71
CLN3-231ENST00000568422 ITGAEP38570 1179 aa25.74■■□□□ 1.71
CLN3-231ENST00000568422 PHF23Q9BUL5 403 aaPredicted RBP25.73■■□□□ 1.71
CLN3-231ENST00000568422 SENP3Q9H4L4 574 aaPredicted RBP25.73■■□□□ 1.71
CLN3-231ENST00000568422 CHGAP10645 457 aaKnown RBP25.71■■□□□ 1.71
CLN3-231ENST00000568422 TBX22Q9Y458 520 aa25.71■■□□□ 1.71
CLN3-231ENST00000568422 MSH6P52701 1360 aa25.69■■□□□ 1.7
CLN3-231ENST00000568422 DIP2AQ14689 1571 aa25.69■■□□□ 1.7
CLN3-231ENST00000568422 PPARGC1BQ86YN6 1023 aaKnown RBP25.69■■□□□ 1.7
CLN3-231ENST00000568422 ROBO1Q9Y6N7 1651 aa25.68■■□□□ 1.7
CLN3-231ENST00000568422 NCOA3Q9Y6Q9 1424 aa25.66■■□□□ 1.7
CLN3-231ENST00000568422 RBM33Q96EV2 1170 aaKnown RBP25.66■■□□□ 1.7
CLN3-231ENST00000568422 SPHKAPQ2M3C7 1700 aa25.66■■□□□ 1.7
CLN3-231ENST00000568422 PIK3R4Q99570 1358 aa25.65■■□□□ 1.7
CLN3-231ENST00000568422 ADAMTS13Q76LX8 1427 aa25.63■■□□□ 1.69
CLN3-231ENST00000568422 RRBP1Q9P2E9 1410 aaKnown RBP25.63■■□□□ 1.69
CLN3-231ENST00000568422 SLAIN2Q9P270 581 aa25.61■■□□□ 1.69
CLN3-231ENST00000568422 NUTM2DQ5VT03 806 aaPredicted RBP25.6■■□□□ 1.69
CLN3-231ENST00000568422 TRPM2O94759 1503 aa25.59■■□□□ 1.69
CLN3-231ENST00000568422 PHLPP1O60346 1717 aa25.55■■□□□ 1.68
CLN3-231ENST00000568422 SETBP1Q9Y6X0 1596 aa25.53■■□□□ 1.68
CLN3-231ENST00000568422 C14orf37Q86TY3 774 aa25.53■■□□□ 1.68
CLN3-231ENST00000568422 C19orf44Q9H6X5 657 aa25.53■■□□□ 1.68
CLN3-231ENST00000568422 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.53■■□□□ 1.68
CLN3-231ENST00000568422 NAIPQ13075 1403 aa25.53■■□□□ 1.68
CLN3-231ENST00000568422 CADPS2Q86UW7 1296 aa25.51■■□□□ 1.67
CLN3-231ENST00000568422 KIF1BO60333 1816 aa25.5■■□□□ 1.67
CLN3-231ENST00000568422 ZNF326Q5BKZ1 582 aaKnown RBP25.5■■□□□ 1.67
CLN3-231ENST00000568422 AMOTL2Q9Y2J4 779 aa25.5■■□□□ 1.67
CLN3-231ENST00000568422 NRXN3Q9Y4C0 1643 aa25.5■■□□□ 1.67
CLN3-231ENST00000568422 CLTCL1P53675 1640 aa25.48■■□□□ 1.67
CLN3-231ENST00000568422 ATF3P18847 181 aa25.48■■□□□ 1.67
CLN3-231ENST00000568422 RGS17Q9UGC6 210 aaPredicted RBP25.48■■□□□ 1.67
CLN3-231ENST00000568422 PTPRUQ92729 1446 aa25.47■■□□□ 1.67
CLN3-231ENST00000568422 XRN1Q8IZH2 1706 aaKnown RBP25.46■■□□□ 1.67
CLN3-231ENST00000568422 JCADQ9P266 1359 aa25.46■■□□□ 1.67
CLN3-231ENST00000568422 HFM1A2PYH4 1435 aa25.45■■□□□ 1.66
CLN3-231ENST00000568422 COL16A1Q07092 1604 aaPredicted RBP25.45■■□□□ 1.66
CLN3-231ENST00000568422 DCCP43146 1447 aa25.44■■□□□ 1.66
CLN3-231ENST00000568422 NEXMIFQ5QGS0 1516 aa25.43■■□□□ 1.66
CLN3-231ENST00000568422 AHDC1Q5TGY3 1603 aaPredicted RBP25.41■■□□□ 1.66
CLN3-231ENST00000568422 TRIM52Q96A61 297 aa25.4■■□□□ 1.66
CLN3-231ENST00000568422 METP08581 1390 aa25.38■■□□□ 1.65
CLN3-231ENST00000568422 SPATA31A6Q5VVP1 1343 aa25.36■■□□□ 1.65
CLN3-231ENST00000568422 SHPRHQ149N8 1683 aa25.36■■□□□ 1.65
CLN3-231ENST00000568422 VGFO15240 615 aaPredicted RBP25.35■■□□□ 1.65
CLN3-231ENST00000568422 SLC4A1APQ9BWU0 796 aaKnown RBP25.35■■□□□ 1.65
CLN3-231ENST00000568422 POTEAQ6S8J7 498 aa25.33■■□□□ 1.65
CLN3-231ENST00000568422 BRINP3Q76B58 766 aa25.33■■□□□ 1.65
CLN3-231ENST00000568422 RPGRIP1LQ68CZ1 1315 aa25.33■■□□□ 1.64
CLN3-231ENST00000568422 ADGRL3Q9HAR2 1447 aa25.3■■□□□ 1.64
CLN3-231ENST00000568422 MST1RQ04912 1400 aa25.29■■□□□ 1.64
CLN3-231ENST00000568422 SETD1AO15047 1707 aaKnown RBP25.29■■□□□ 1.64
CLN3-231ENST00000568422 PPLO60437 1756 aa25.29■■□□□ 1.64
CLN3-231ENST00000568422 ASXL1Q8IXJ9 1541 aa25.29■■□□□ 1.64
CLN3-231ENST00000568422 NALCNQ8IZF0 1738 aa25.29■■□□□ 1.64
CLN3-231ENST00000568422 NHSL1Q5SYE7 1610 aa25.27■■□□□ 1.64
CLN3-231ENST00000568422 PTCH1Q13635 1447 aa25.26■■□□□ 1.63
CLN3-231ENST00000568422 LRP6O75581 1613 aa25.25■■□□□ 1.63
CLN3-231ENST00000568422 PRAG1Q86YV5 1406 aa25.24■■□□□ 1.63
CLN3-231ENST00000568422 MEX3CQ5U5Q3 659 aaKnown RBP25.24■■□□□ 1.63
CLN3-231ENST00000568422 SETD5Q9C0A6 1442 aa25.23■■□□□ 1.63
CLN3-231ENST00000568422 ZNF772Q68DY9 489 aaPredicted RBP25.21■■□□□ 1.63
CLN3-231ENST00000568422 LRRC59Q96AG4 307 aaKnown RBP25.2■■□□□ 1.62
CLN3-231ENST00000568422 ACIN1Q9UKV3 1341 aaKnown RBP25.19■■□□□ 1.62
CLN3-231ENST00000568422 CCDC144AA2RUR9 1427 aa25.19■■□□□ 1.62
CLN3-231ENST00000568422 ROBO2Q9HCK4 1378 aa25.18■■□□□ 1.62
CLN3-231ENST00000568422 LAMC1P11047 1609 aa25.15■■□□□ 1.62
CLN3-231ENST00000568422 C1orf167Q5SNV9 1468 aa25.15■■□□□ 1.62
CLN3-231ENST00000568422 FOXD1Q16676 465 aa25.15■■□□□ 1.62
CLN3-231ENST00000568422 MPHOSPH9Q99550 1183 aa25.15■■□□□ 1.62
CLN3-231ENST00000568422 IFT172Q9UG01 1749 aa25.14■■□□□ 1.61
CLN3-231ENST00000568422 NUTM2BA6NNL0 878 aaPredicted RBP25.13■■□□□ 1.61
CLN3-231ENST00000568422 NUTM2EB1AL46 878 aaPredicted RBP25.13■■□□□ 1.61
CLN3-231ENST00000568422 NUTM2AQ8IVF1 878 aaPredicted RBP25.13■■□□□ 1.61
CLN3-231ENST00000568422 ANKRD30BQ9BXX2 1392 aa25.12■■□□□ 1.61
CLN3-231ENST00000568422 SPATA31E1Q6ZUB1 1445 aa25.12■■□□□ 1.61
CLN3-231ENST00000568422 ADGRF5Q8IZF2 1346 aa25.09■■□□□ 1.61
CLN3-231ENST00000568422 PNPLA6Q8IY17 1366 aa25.08■■□□□ 1.61
CLN3-231ENST00000568422 RGL3Q3MIN7 710 aa25.08■■□□□ 1.61
CLN3-231ENST00000568422 DDX17Q92841 729 aaKnown RBP25.08■■□□□ 1.61
CLN3-231ENST00000568422 CDC42BPGQ6DT37 1551 aa25.07■■□□□ 1.6
CLN3-231ENST00000568422 RXRBP28702 533 aa25.05■■□□□ 1.6
CLN3-231ENST00000568422 ORAI2Q96SN7 254 aa25.05■■□□□ 1.6
CLN3-231ENST00000568422 SOS2Q07890 1332 aaPredicted RBP25.05■■□□□ 1.6
CLN3-231ENST00000568422 TECPR2O15040 1411 aa25.04■■□□□ 1.6
CLN3-231ENST00000568422 AFF2P51816 1311 aa25.04■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms