RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 E9PCH4 1651 aa22.61■■□□□ 1.21
VPS39-210ENST00000568357 GCC2Q8IWJ2 1684 aa22.61■■□□□ 1.21
VPS39-210ENST00000568357 SETD1AO15047 1707 aaKnown RBP22.6■■□□□ 1.21
VPS39-210ENST00000568357 TRIM52Q96A61 297 aa22.6■■□□□ 1.21
VPS39-210ENST00000568357 SCAF11Q99590 1463 aaKnown RBP22.6■■□□□ 1.21
VPS39-210ENST00000568357 CHGAP10645 457 aaKnown RBP22.55■■□□□ 1.2
VPS39-210ENST00000568357 ADGRB3O60242 1522 aa22.55■■□□□ 1.2
VPS39-210ENST00000568357 POTEAQ6S8J7 498 aa22.54■■□□□ 1.2
VPS39-210ENST00000568357 KDM5AP29375 1690 aaKnown RBP22.54■■□□□ 1.2
VPS39-210ENST00000568357 SLC4A1APQ9BWU0 796 aaKnown RBP22.51■■□□□ 1.19
VPS39-210ENST00000568357 TMEM131LA2VDJ0 1609 aa22.49■■□□□ 1.19
VPS39-210ENST00000568357 ZFYVE9O95405 1425 aa22.48■■□□□ 1.19
VPS39-210ENST00000568357 RIMS2Q9UQ26 1411 aa22.48■■□□□ 1.19
VPS39-210ENST00000568357 HDGFP51858 240 aaKnown RBP22.47■■□□□ 1.19
VPS39-210ENST00000568357 NUTM2DQ5VT03 806 aaPredicted RBP22.47■■□□□ 1.19
VPS39-210ENST00000568357 SLC26A8Q96RN1 970 aa22.47■■□□□ 1.19
VPS39-210ENST00000568357 ROBO1Q9Y6N7 1651 aa22.46■■□□□ 1.19
VPS39-210ENST00000568357 FOXD1Q16676 465 aa22.45■■□□□ 1.18
VPS39-210ENST00000568357 SETD5Q9C0A6 1442 aa22.45■■□□□ 1.18
VPS39-210ENST00000568357 BCANQ96GW7 911 aa22.44■■□□□ 1.18
VPS39-210ENST00000568357 MPHOSPH9Q99550 1183 aa22.44■■□□□ 1.18
VPS39-210ENST00000568357 PPP1R15AO75807 674 aaPredicted RBP22.43■■□□□ 1.18
VPS39-210ENST00000568357 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.43■■□□□ 1.18
VPS39-210ENST00000568357 FAM135BQ49AJ0 1406 aa22.41■■□□□ 1.18
VPS39-210ENST00000568357 PLEKHG1Q9ULL1 1385 aa22.41■■□□□ 1.18
VPS39-210ENST00000568357 MYO5BQ9ULV0 1848 aa22.41■■□□□ 1.18
VPS39-210ENST00000568357 SPHKAPQ2M3C7 1700 aa22.4■■□□□ 1.18
VPS39-210ENST00000568357 TRPM2O94759 1503 aa22.39■■□□□ 1.17
VPS39-210ENST00000568357 ZNF326Q5BKZ1 582 aaKnown RBP22.38■■□□□ 1.17
VPS39-210ENST00000568357 RAB3GAP2Q9H2M9 1393 aa22.38■■□□□ 1.17
VPS39-210ENST00000568357 KCNA6P17658 529 aa22.37■■□□□ 1.17
VPS39-210ENST00000568357 CLTCL1P53675 1640 aa22.36■■□□□ 1.17
VPS39-210ENST00000568357 TBX22Q9Y458 520 aa22.35■■□□□ 1.17
VPS39-210ENST00000568357 ACIN1Q9UKV3 1341 aaKnown RBP22.34■■□□□ 1.17
VPS39-210ENST00000568357 ADAMTS13Q76LX8 1427 aa22.32■■□□□ 1.16
VPS39-210ENST00000568357 PHLPP1O60346 1717 aa22.32■■□□□ 1.16
VPS39-210ENST00000568357 TMEM94Q12767 1356 aa22.32■■□□□ 1.16
VPS39-210ENST00000568357 RBM33Q96EV2 1170 aaKnown RBP22.3■■□□□ 1.16
VPS39-210ENST00000568357 PROSER2Q86WR7 435 aaPredicted RBP22.29■■□□□ 1.16
VPS39-210ENST00000568357 HRCP23327 699 aa22.27■■□□□ 1.16
VPS39-210ENST00000568357 NEXMIFQ5QGS0 1516 aa22.25■■□□□ 1.15
VPS39-210ENST00000568357 NWD1Q149M9 1564 aa22.25■■□□□ 1.15
VPS39-210ENST00000568357 CCDC144AA2RUR9 1427 aa22.24■■□□□ 1.15
VPS39-210ENST00000568357 RPGRIP1LQ68CZ1 1315 aa22.24■■□□□ 1.15
VPS39-210ENST00000568357 COL16A1Q07092 1604 aaPredicted RBP22.24■■□□□ 1.15
VPS39-210ENST00000568357 VGFO15240 615 aaPredicted RBP22.23■■□□□ 1.15
VPS39-210ENST00000568357 RGL3Q3MIN7 710 aa22.23■■□□□ 1.15
VPS39-210ENST00000568357 LRP6O75581 1613 aa22.23■■□□□ 1.15
VPS39-210ENST00000568357 UPF1Q92900 1129 aaKnown RBP eCLIP22.22■■□□□ 1.15
VPS39-210ENST00000568357 PIK3R4Q99570 1358 aa22.22■■□□□ 1.15
VPS39-210ENST00000568357 KIF1BO60333 1816 aa22.22■■□□□ 1.15
VPS39-210ENST00000568357 AMOTL2Q9Y2J4 779 aa22.21■■□□□ 1.15
VPS39-210ENST00000568357 JCADQ9P266 1359 aa22.21■■□□□ 1.15
VPS39-210ENST00000568357 METP08581 1390 aa22.2■■□□□ 1.14
VPS39-210ENST00000568357 SPATA31E1Q6ZUB1 1445 aa22.2■■□□□ 1.14
VPS39-210ENST00000568357 PTPRUQ92729 1446 aa22.2■■□□□ 1.14
VPS39-210ENST00000568357 NKTRP30414 1462 aaKnown RBP22.2■■□□□ 1.14
VPS39-210ENST00000568357 SETBP1Q9Y6X0 1596 aa22.2■■□□□ 1.14
VPS39-210ENST00000568357 DIP2AQ14689 1571 aa22.19■■□□□ 1.14
VPS39-210ENST00000568357 NRXN3Q9Y4C0 1643 aa22.19■■□□□ 1.14
VPS39-210ENST00000568357 CHD2O14647 1828 aaKnown RBP22.17■■□□□ 1.14
VPS39-210ENST00000568357 ANKRD30BQ9BXX2 1392 aa22.14■■□□□ 1.14
VPS39-210ENST00000568357 ADGRF5Q8IZF2 1346 aa22.14■■□□□ 1.14
VPS39-210ENST00000568357 MSH6P52701 1360 aa22.13■■□□□ 1.13
VPS39-210ENST00000568357 SHPRHQ149N8 1683 aa22.12■■□□□ 1.13
VPS39-210ENST00000568357 C14orf37Q86TY3 774 aa22.1■■□□□ 1.13
VPS39-210ENST00000568357 SLAIN2Q9P270 581 aa22.1■■□□□ 1.13
VPS39-210ENST00000568357 NCOA3Q9Y6Q9 1424 aa22.1■■□□□ 1.13
VPS39-210ENST00000568357 PPLO60437 1756 aa22.08■■□□□ 1.13
VPS39-210ENST00000568357 C19orf44Q9H6X5 657 aa22.08■■□□□ 1.13
VPS39-210ENST00000568357 MEX3CQ5U5Q3 659 aaKnown RBP22.07■■□□□ 1.12
VPS39-210ENST00000568357 ZNF772Q68DY9 489 aaPredicted RBP22.07■■□□□ 1.12
VPS39-210ENST00000568357 SPATA31A6Q5VVP1 1343 aa22.06■■□□□ 1.12
VPS39-210ENST00000568357 AHDC1Q5TGY3 1603 aaPredicted RBP22.06■■□□□ 1.12
VPS39-210ENST00000568357 XRN1Q8IZH2 1706 aaKnown RBP22.04■■□□□ 1.12
VPS39-210ENST00000568357 CDK12Q9NYV4 1490 aaPredicted RBP22.02■■□□□ 1.12
VPS39-210ENST00000568357 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.01■■□□□ 1.11
VPS39-210ENST00000568357 ATF3P18847 181 aa22.01■■□□□ 1.11
VPS39-210ENST00000568357 TMEM132EQ6IEE7 984 aa22.01■■□□□ 1.11
VPS39-210ENST00000568357 CADPS2Q86UW7 1296 aa22.01■■□□□ 1.11
VPS39-210ENST00000568357 ROBO2Q9HCK4 1378 aa22■■□□□ 1.11
VPS39-210ENST00000568357 PIK3C2GO75747 1445 aa22■■□□□ 1.11
VPS39-210ENST00000568357 RXRBP28702 533 aa21.99■■□□□ 1.11
VPS39-210ENST00000568357 C14orf93Q9H972 538 aaKnown RBP21.99■■□□□ 1.11
VPS39-210ENST00000568357 IFT172Q9UG01 1749 aa21.98■■□□□ 1.11
VPS39-210ENST00000568357 CFAP70Q5T0N1 1121 aa21.97■■□□□ 1.11
VPS39-210ENST00000568357 STK26Q9P289 416 aa21.97■■□□□ 1.11
VPS39-210ENST00000568357 NRXN1Q9ULB1 1477 aa21.96■■□□□ 1.11
VPS39-210ENST00000568357 DCAF11Q8TEB1 546 aa21.96■■□□□ 1.11
VPS39-210ENST00000568357 KDM2AQ9Y2K7 1162 aa21.96■■□□□ 1.11
VPS39-210ENST00000568357 PTCH1Q13635 1447 aa21.96■■□□□ 1.11
VPS39-210ENST00000568357 TRIM26Q12899 539 aaPredicted RBP21.95■■□□□ 1.1
VPS39-210ENST00000568357 RGS12O14924 1447 aa21.95■■□□□ 1.1
VPS39-210ENST00000568357 MYOM2P54296 1465 aa21.95■■□□□ 1.1
VPS39-210ENST00000568357 PRAG1Q86YV5 1406 aa21.94■■□□□ 1.1
VPS39-210ENST00000568357 LRPPRCP42704 1394 aaKnown RBP21.93■■□□□ 1.1
VPS39-210ENST00000568357 DHX57Q6P158 1386 aaKnown RBP21.93■■□□□ 1.1
VPS39-210ENST00000568357 ADGRL3Q9HAR2 1447 aa21.93■■□□□ 1.1
VPS39-210ENST00000568357 DCCP43146 1447 aa21.92■■□□□ 1.1
VPS39-210ENST00000568357 ABCC11Q96J66 1382 aa21.92■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms