RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 TXNDC2Q86VQ3 553 aa14.6□□□□□ -0.07
CLK3-220ENST00000567992 NEXMIFQ5QGS0 1516 aa14.6□□□□□ -0.07
CLK3-220ENST00000567992 ZNF335Q9H4Z2 1342 aaPredicted RBP14.6□□□□□ -0.07
CLK3-220ENST00000567992 NRXN3Q9Y4C0 1643 aa14.58□□□□□ -0.08
CLK3-220ENST00000567992 EID1Q9Y6B2 187 aa14.57□□□□□ -0.08
CLK3-220ENST00000567992 PLEKHG1Q9ULL1 1385 aa14.57□□□□□ -0.08
CLK3-220ENST00000567992 IFT172Q9UG01 1749 aa14.56□□□□□ -0.08
CLK3-220ENST00000567992 PPLO60437 1756 aa14.56□□□□□ -0.08
CLK3-220ENST00000567992 CHGAP10645 457 aaKnown RBP14.56□□□□□ -0.08
CLK3-220ENST00000567992 SPATA31E1Q6ZUB1 1445 aa14.56□□□□□ -0.08
CLK3-220ENST00000567992 CCDC144AA2RUR9 1427 aa14.55□□□□□ -0.08
CLK3-220ENST00000567992 CPS1P31327 1500 aa14.55□□□□□ -0.08
CLK3-220ENST00000567992 NWD1Q149M9 1564 aa14.55□□□□□ -0.08
CLK3-220ENST00000567992 CERKQ8TCT0 537 aa14.54□□□□□ -0.08
CLK3-220ENST00000567992 ADAMTS13Q76LX8 1427 aa14.54□□□□□ -0.08
CLK3-220ENST00000567992 SETBP1Q9Y6X0 1596 aa14.54□□□□□ -0.08
CLK3-220ENST00000567992 DIP2AQ14689 1571 aa14.53□□□□□ -0.08
CLK3-220ENST00000567992 IQSEC2Q5JU85 1478 aa14.53□□□□□ -0.08
CLK3-220ENST00000567992 ANKRD30BQ9BXX2 1392 aa14.53□□□□□ -0.08
CLK3-220ENST00000567992 NUTM2DQ5VT03 806 aaPredicted RBP14.52□□□□□ -0.09
CLK3-220ENST00000567992 SETD1AO15047 1707 aaKnown RBP14.52□□□□□ -0.09
CLK3-220ENST00000567992 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.51□□□□□ -0.09
CLK3-220ENST00000567992 CHD2O14647 1828 aaKnown RBP14.5□□□□□ -0.09
CLK3-220ENST00000567992 XIRP1Q702N8 1843 aaKnown RBP14.5□□□□□ -0.09
CLK3-220ENST00000567992 TRIM26Q12899 539 aaPredicted RBP14.5□□□□□ -0.09
CLK3-220ENST00000567992 PPP1R15AO75807 674 aaPredicted RBP14.49□□□□□ -0.09
CLK3-220ENST00000567992 HDGFP51858 240 aaKnown RBP14.49□□□□□ -0.09
CLK3-220ENST00000567992 ZNF326Q5BKZ1 582 aaKnown RBP14.49□□□□□ -0.09
CLK3-220ENST00000567992 SLC26A8Q96RN1 970 aa14.49□□□□□ -0.09
CLK3-220ENST00000567992 LRRC7Q96NW7 1537 aa14.49□□□□□ -0.09
CLK3-220ENST00000567992 XRN1Q8IZH2 1706 aaKnown RBP14.46□□□□□ -0.09
CLK3-220ENST00000567992 RPGRIP1LQ68CZ1 1315 aa14.46□□□□□ -0.09
CLK3-220ENST00000567992 NKTRP30414 1462 aaKnown RBP14.46□□□□□ -0.09
CLK3-220ENST00000567992 ALKQ9UM73 1620 aa14.45□□□□□ -0.1
CLK3-220ENST00000567992 TBX22Q9Y458 520 aa14.45□□□□□ -0.1
CLK3-220ENST00000567992 PTPRUQ92729 1446 aa14.44□□□□□ -0.1
CLK3-220ENST00000567992 FBXO41Q8TF61 875 aa14.44□□□□□ -0.1
CLK3-220ENST00000567992 PIK3R4Q99570 1358 aa14.44□□□□□ -0.1
CLK3-220ENST00000567992 NRXN1Q9ULB1 1477 aa14.44□□□□□ -0.1
CLK3-220ENST00000567992 KCNA6P17658 529 aa14.43□□□□□ -0.1
CLK3-220ENST00000567992 ILDR1Q86SU0 546 aaPredicted RBP14.43□□□□□ -0.1
CLK3-220ENST00000567992 MYOM2P54296 1465 aa14.43□□□□□ -0.1
CLK3-220ENST00000567992 BCANQ96GW7 911 aa14.42□□□□□ -0.1
CLK3-220ENST00000567992 METP08581 1390 aa14.42□□□□□ -0.1
CLK3-220ENST00000567992 PIK3C2GO75747 1445 aa14.41□□□□□ -0.1
CLK3-220ENST00000567992 ASXL1Q8IXJ9 1541 aa14.41□□□□□ -0.1
CLK3-220ENST00000567992 RGL3Q3MIN7 710 aa14.41□□□□□ -0.1
CLK3-220ENST00000567992 DHX57Q6P158 1386 aaKnown RBP14.41□□□□□ -0.1
CLK3-220ENST00000567992 ADGRF5Q8IZF2 1346 aa14.41□□□□□ -0.1
CLK3-220ENST00000567992 VGFO15240 615 aaPredicted RBP14.4□□□□□ -0.1
CLK3-220ENST00000567992 TMEM94Q12767 1356 aa14.39□□□□□ -0.11
CLK3-220ENST00000567992 PRAG1Q86YV5 1406 aa14.39□□□□□ -0.11
CLK3-220ENST00000567992 LAMC1P11047 1609 aa14.37□□□□□ -0.11
CLK3-220ENST00000567992 KNDC1Q76NI1 1749 aa14.35□□□□□ -0.11
CLK3-220ENST00000567992 PTCH1Q13635 1447 aa14.34□□□□□ -0.11
CLK3-220ENST00000567992 RBM33Q96EV2 1170 aaKnown RBP14.34□□□□□ -0.11
CLK3-220ENST00000567992 AMOTL2Q9Y2J4 779 aa14.34□□□□□ -0.11
CLK3-220ENST00000567992 NALCNQ8IZF0 1738 aa14.34□□□□□ -0.11
CLK3-220ENST00000567992 NCOA3Q9Y6Q9 1424 aa14.33□□□□□ -0.11
CLK3-220ENST00000567992 UBAP1LF5GYI3 381 aa14.33□□□□□ -0.12
CLK3-220ENST00000567992 PROSER2Q86WR7 435 aaPredicted RBP14.33□□□□□ -0.12
CLK3-220ENST00000567992 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.32□□□□□ -0.12
CLK3-220ENST00000567992 ADGRB1O14514 1584 aa14.32□□□□□ -0.12
CLK3-220ENST00000567992 TECPR2O15040 1411 aa14.32□□□□□ -0.12
CLK3-220ENST00000567992 ROBO2Q9HCK4 1378 aa14.31□□□□□ -0.12
CLK3-220ENST00000567992 SIN3AQ96ST3 1273 aa14.3□□□□□ -0.12
CLK3-220ENST00000567992 C14orf93Q9H972 538 aaKnown RBP14.3□□□□□ -0.12
CLK3-220ENST00000567992 LRPPRCP42704 1394 aaKnown RBP14.29□□□□□ -0.12
CLK3-220ENST00000567992 KIAA1210Q9ULL0 1709 aa14.29□□□□□ -0.12
CLK3-220ENST00000567992 TOM1O60784 492 aa14.28□□□□□ -0.12
CLK3-220ENST00000567992 MSH6P52701 1360 aa14.28□□□□□ -0.12
CLK3-220ENST00000567992 DCAF11Q8TEB1 546 aa14.28□□□□□ -0.12
CLK3-220ENST00000567992 PCGF6Q9BYE7 350 aa14.28□□□□□ -0.12
CLK3-220ENST00000567992 YTHDC2Q9H6S0 1430 aaKnown RBP14.28□□□□□ -0.12
CLK3-220ENST00000567992 ADGRL3Q9HAR2 1447 aa14.28□□□□□ -0.12
CLK3-220ENST00000567992 CFAP70Q5T0N1 1121 aa14.27□□□□□ -0.13
CLK3-220ENST00000567992 ROBO1Q9Y6N7 1651 aa14.26□□□□□ -0.13
CLK3-220ENST00000567992 DCCP43146 1447 aa14.26□□□□□ -0.13
CLK3-220ENST00000567992 ABCC11Q96J66 1382 aa14.26□□□□□ -0.13
CLK3-220ENST00000567992 TMEM132EQ6IEE7 984 aa14.26□□□□□ -0.13
CLK3-220ENST00000567992 STAC3Q96MF2 364 aa14.26□□□□□ -0.13
CLK3-220ENST00000567992 KDM2AQ9Y2K7 1162 aa14.25□□□□□ -0.13
CLK3-220ENST00000567992 DLC1Q96QB1 1528 aa14.25□□□□□ -0.13
CLK3-220ENST00000567992 PIP4K2BP78356 416 aa14.24□□□□□ -0.13
CLK3-220ENST00000567992 PLEKHH1Q9ULM0 1364 aa14.23□□□□□ -0.13
CLK3-220ENST00000567992 CDC42BPGQ6DT37 1551 aa14.23□□□□□ -0.13
CLK3-220ENST00000567992 L3MBTL2Q969R5 705 aa14.23□□□□□ -0.13
CLK3-220ENST00000567992 C19orf44Q9H6X5 657 aa14.23□□□□□ -0.13
CLK3-220ENST00000567992 ARHGEF28Q8N1W1 1705 aaKnown RBP14.23□□□□□ -0.13
CLK3-220ENST00000567992 MST1RQ04912 1400 aa14.23□□□□□ -0.13
CLK3-220ENST00000567992 FAM135BQ49AJ0 1406 aa14.23□□□□□ -0.13
CLK3-220ENST00000567992 TRPM1Q7Z4N2 1603 aa14.23□□□□□ -0.13
CLK3-220ENST00000567992 NEUROD1Q13562 356 aa14.21□□□□□ -0.13
CLK3-220ENST00000567992 C14orf37Q86TY3 774 aa14.21□□□□□ -0.13
CLK3-220ENST00000567992 STK26Q9P289 416 aa14.21□□□□□ -0.13
CLK3-220ENST00000567992 SCAF1Q9H7N4 1312 aaKnown RBP14.2□□□□□ -0.14
CLK3-220ENST00000567992 ADGRB2O60241 1585 aa14.19□□□□□ -0.14
CLK3-220ENST00000567992 HSPA1LP34931 641 aa14.19□□□□□ -0.14
CLK3-220ENST00000567992 CADPS2Q86UW7 1296 aa14.19□□□□□ -0.14
CLK3-220ENST00000567992 SIRT1Q96EB6 747 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms