RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 SLC4A1APQ9BWU0 796 aaKnown RBP28■■■□□ 2.07
CLN3-227ENST00000567495 TOM1O60784 492 aa27.99■■■□□ 2.07
CLN3-227ENST00000567495 PLEKHG1Q9ULL1 1385 aa27.99■■■□□ 2.07
CLN3-227ENST00000567495 SLC26A8Q96RN1 970 aa27.97■■■□□ 2.07
CLN3-227ENST00000567495 KCNA6P17658 529 aa27.96■■■□□ 2.07
CLN3-227ENST00000567495 LRRC7Q96NW7 1537 aa27.94■■■□□ 2.06
CLN3-227ENST00000567495 TBX22Q9Y458 520 aa27.92■■■□□ 2.06
CLN3-227ENST00000567495 TRPM2O94759 1503 aa27.9■■■□□ 2.06
CLN3-227ENST00000567495 SPHKAPQ2M3C7 1700 aa27.89■■■□□ 2.06
CLN3-227ENST00000567495 ZNF326Q5BKZ1 582 aaKnown RBP27.88■■■□□ 2.05
CLN3-227ENST00000567495 SETD5Q9C0A6 1442 aa27.87■■■□□ 2.05
CLN3-227ENST00000567495 NUTM2DQ5VT03 806 aaPredicted RBP27.86■■■□□ 2.05
CLN3-227ENST00000567495 STRCP1A6NGW2 1772 aa27.85■■■□□ 2.05
CLN3-227ENST00000567495 MYO5BQ9ULV0 1848 aa27.84■■■□□ 2.05
CLN3-227ENST00000567495 MPHOSPH9Q99550 1183 aa27.84■■■□□ 2.05
CLN3-227ENST00000567495 PROSER2Q86WR7 435 aaPredicted RBP27.83■■■□□ 2.05
CLN3-227ENST00000567495 PIP4K2BP78356 416 aa27.82■■■□□ 2.04
CLN3-227ENST00000567495 SCAF1Q9H7N4 1312 aaKnown RBP27.82■■■□□ 2.04
CLN3-227ENST00000567495 PIK3R4Q99570 1358 aa27.82■■■□□ 2.04
CLN3-227ENST00000567495 NKTRP30414 1462 aaKnown RBP27.82■■■□□ 2.04
CLN3-227ENST00000567495 SENP3Q9H4L4 574 aaPredicted RBP27.81■■■□□ 2.04
CLN3-227ENST00000567495 TMEM94Q12767 1356 aa27.81■■■□□ 2.04
CLN3-227ENST00000567495 ADAMTS13Q76LX8 1427 aa27.8■■■□□ 2.04
CLN3-227ENST00000567495 CLTCL1P53675 1640 aa27.78■■■□□ 2.04
CLN3-227ENST00000567495 DIP2AQ14689 1571 aa27.78■■■□□ 2.04
CLN3-227ENST00000567495 RPGRIP1LQ68CZ1 1315 aa27.78■■■□□ 2.04
CLN3-227ENST00000567495 NWD1Q149M9 1564 aa27.77■■■□□ 2.04
CLN3-227ENST00000567495 VGFO15240 615 aaPredicted RBP27.75■■■□□ 2.03
CLN3-227ENST00000567495 FOXD1Q16676 465 aa27.75■■■□□ 2.03
CLN3-227ENST00000567495 RAB3GAP2Q9H2M9 1393 aa27.73■■■□□ 2.03
CLN3-227ENST00000567495 CCDC144AA2RUR9 1427 aa27.73■■■□□ 2.03
CLN3-227ENST00000567495 HRCP23327 699 aa27.72■■■□□ 2.03
CLN3-227ENST00000567495 NCOA3Q9Y6Q9 1424 aa27.71■■■□□ 2.03
CLN3-227ENST00000567495 SETBP1Q9Y6X0 1596 aa27.7■■■□□ 2.03
CLN3-227ENST00000567495 HSPA1LP34931 641 aa27.7■■■□□ 2.02
CLN3-227ENST00000567495 ALKQ9UM73 1620 aa27.69■■■□□ 2.02
CLN3-227ENST00000567495 MSH6P52701 1360 aa27.69■■■□□ 2.02
CLN3-227ENST00000567495 NEXMIFQ5QGS0 1516 aa27.68■■■□□ 2.02
CLN3-227ENST00000567495 AMOTL2Q9Y2J4 779 aa27.68■■■□□ 2.02
CLN3-227ENST00000567495 KIF1BO60333 1816 aa27.67■■■□□ 2.02
CLN3-227ENST00000567495 RBM33Q96EV2 1170 aaKnown RBP27.66■■■□□ 2.02
CLN3-227ENST00000567495 CHD2O14647 1828 aaKnown RBP27.65■■■□□ 2.02
CLN3-227ENST00000567495 FAM135BQ49AJ0 1406 aa27.62■■■□□ 2.01
CLN3-227ENST00000567495 C14orf37Q86TY3 774 aa27.62■■■□□ 2.01
CLN3-227ENST00000567495 C19orf44Q9H6X5 657 aa27.61■■■□□ 2.01
CLN3-227ENST00000567495 METP08581 1390 aa27.6■■■□□ 2.01
CLN3-227ENST00000567495 XIRP1Q702N8 1843 aaKnown RBP27.6■■■□□ 2.01
CLN3-227ENST00000567495 SPATA31E1Q6ZUB1 1445 aa27.6■■■□□ 2.01
CLN3-227ENST00000567495 PTPRUQ92729 1446 aa27.6■■■□□ 2.01
CLN3-227ENST00000567495 NRXN3Q9Y4C0 1643 aa27.59■■■□□ 2.01
CLN3-227ENST00000567495 ANKRD30BQ9BXX2 1392 aa27.59■■■□□ 2.01
CLN3-227ENST00000567495 RGL3Q3MIN7 710 aa27.58■■■□□ 2.01
CLN3-227ENST00000567495 SLAIN2Q9P270 581 aa27.57■■■□□ 2
CLN3-227ENST00000567495 CADPS2Q86UW7 1296 aa27.56■■■□□ 2
CLN3-227ENST00000567495 ATF3P18847 181 aa27.54■■■□□ 2
CLN3-227ENST00000567495 DISP3Q9P2K9 1392 aa27.54■■■□□ 2
CLN3-227ENST00000567495 ADGRF5Q8IZF2 1346 aa27.49■■□□□ 1.99
CLN3-227ENST00000567495 XRN1Q8IZH2 1706 aaKnown RBP27.49■■□□□ 1.99
CLN3-227ENST00000567495 DCCP43146 1447 aa27.48■■□□□ 1.99
CLN3-227ENST00000567495 PPLO60437 1756 aa27.47■■□□□ 1.99
CLN3-227ENST00000567495 PTCH1Q13635 1447 aa27.45■■□□□ 1.98
CLN3-227ENST00000567495 PRAG1Q86YV5 1406 aa27.45■■□□□ 1.98
CLN3-227ENST00000567495 ADGRL3Q9HAR2 1447 aa27.41■■□□□ 1.98
CLN3-227ENST00000567495 PIK3C2GO75747 1445 aa27.4■■□□□ 1.98
CLN3-227ENST00000567495 ROBO2Q9HCK4 1378 aa27.39■■□□□ 1.98
CLN3-227ENST00000567495 STAC3Q96MF2 364 aa27.39■■□□□ 1.98
CLN3-227ENST00000567495 ROBO1Q9Y6N7 1651 aa27.39■■□□□ 1.97
CLN3-227ENST00000567495 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.38■■□□□ 1.97
CLN3-227ENST00000567495 C14orf93Q9H972 538 aaKnown RBP27.37■■□□□ 1.97
CLN3-227ENST00000567495 MYOM2P54296 1465 aa27.36■■□□□ 1.97
CLN3-227ENST00000567495 SETD1AO15047 1707 aaKnown RBP27.36■■□□□ 1.97
CLN3-227ENST00000567495 LRPPRCP42704 1394 aaKnown RBP27.35■■□□□ 1.97
CLN3-227ENST00000567495 ABCC11Q96J66 1382 aa27.34■■□□□ 1.97
CLN3-227ENST00000567495 NRXN1Q9ULB1 1477 aa27.33■■□□□ 1.97
CLN3-227ENST00000567495 IFT172Q9UG01 1749 aa27.33■■□□□ 1.96
CLN3-227ENST00000567495 BRINP3Q76B58 766 aa27.32■■□□□ 1.96
CLN3-227ENST00000567495 STK26Q9P289 416 aa27.31■■□□□ 1.96
CLN3-227ENST00000567495 TECPR2O15040 1411 aa27.31■■□□□ 1.96
CLN3-227ENST00000567495 MST1RQ04912 1400 aa27.31■■□□□ 1.96
CLN3-227ENST00000567495 MED1Q15648 1581 aaPredicted RBP27.31■■□□□ 1.96
CLN3-227ENST00000567495 TMEM132EQ6IEE7 984 aa27.3■■□□□ 1.96
CLN3-227ENST00000567495 SIRT1Q96EB6 747 aa27.29■■□□□ 1.96
CLN3-227ENST00000567495 DHX57Q6P158 1386 aaKnown RBP27.27■■□□□ 1.96
CLN3-227ENST00000567495 JCADQ9P266 1359 aa27.27■■□□□ 1.96
CLN3-227ENST00000567495 CFAP70Q5T0N1 1121 aa27.27■■□□□ 1.96
CLN3-227ENST00000567495 DCAF11Q8TEB1 546 aa27.27■■□□□ 1.96
CLN3-227ENST00000567495 PHF23Q9BUL5 403 aaPredicted RBP27.27■■□□□ 1.96
CLN3-227ENST00000567495 YTHDC2Q9H6S0 1430 aaKnown RBP27.26■■□□□ 1.95
CLN3-227ENST00000567495 ILDR2Q71H61 639 aa27.23■■□□□ 1.95
CLN3-227ENST00000567495 KDM2AQ9Y2K7 1162 aa27.23■■□□□ 1.95
CLN3-227ENST00000567495 AHDC1Q5TGY3 1603 aaPredicted RBP27.23■■□□□ 1.95
CLN3-227ENST00000567495 WAPLQ7Z5K2 1190 aa27.22■■□□□ 1.95
CLN3-227ENST00000567495 ASXL1Q8IXJ9 1541 aa27.21■■□□□ 1.95
CLN3-227ENST00000567495 C1orf167Q5SNV9 1468 aa27.21■■□□□ 1.95
CLN3-227ENST00000567495 PHLPP1O60346 1717 aa27.21■■□□□ 1.95
CLN3-227ENST00000567495 NALCNQ8IZF0 1738 aa27.21■■□□□ 1.95
CLN3-227ENST00000567495 LAMC1P11047 1609 aa27.2■■□□□ 1.95
CLN3-227ENST00000567495 SPATA31A6Q5VVP1 1343 aa27.17■■□□□ 1.94
CLN3-227ENST00000567495 COL16A1Q07092 1604 aaPredicted RBP27.17■■□□□ 1.94
CLN3-227ENST00000567495 LRRC59Q96AG4 307 aaKnown RBP27.16■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms