RNA–Protein interactions for RNA: ENST00000565517.5

COMMD4-212, Transcript of COMM domain containing 4, humanhuman

TSL 4

Gene COMMD4, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-212ENST00000565517 RAB3GAP2Q9H2M9 1393 aa22.97■■□□□ 1.27
COMMD4-212ENST00000565517 RIMS2Q9UQ26 1411 aa22.97■■□□□ 1.27
COMMD4-212ENST00000565517 CLTCL1P53675 1640 aa22.97■■□□□ 1.27
COMMD4-212ENST00000565517 KIF1BO60333 1816 aa22.96■■□□□ 1.27
COMMD4-212ENST00000565517 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.96■■□□□ 1.27
COMMD4-212ENST00000565517 CPS1P31327 1500 aa22.96■■□□□ 1.27
COMMD4-212ENST00000565517 HRCP23327 699 aa22.95■■□□□ 1.26
COMMD4-212ENST00000565517 PLEKHG1Q9ULL1 1385 aa22.92■■□□□ 1.26
COMMD4-212ENST00000565517 STRCP1A6NGW2 1772 aa22.91■■□□□ 1.26
COMMD4-212ENST00000565517 PPP1R15AO75807 674 aaPredicted RBP22.9■■□□□ 1.26
COMMD4-212ENST00000565517 FOXD1Q16676 465 aa22.88■■□□□ 1.25
COMMD4-212ENST00000565517 SLC26A8Q96RN1 970 aa22.86■■□□□ 1.25
COMMD4-212ENST00000565517 ZNF326Q5BKZ1 582 aaKnown RBP22.85■■□□□ 1.25
COMMD4-212ENST00000565517 BCANQ96GW7 911 aa22.85■■□□□ 1.25
COMMD4-212ENST00000565517 TBX22Q9Y458 520 aa22.84■■□□□ 1.25
COMMD4-212ENST00000565517 CCDC144AA2RUR9 1427 aa22.83■■□□□ 1.25
COMMD4-212ENST00000565517 NUTM2DQ5VT03 806 aaPredicted RBP22.83■■□□□ 1.25
COMMD4-212ENST00000565517 NEXMIFQ5QGS0 1516 aa22.82■■□□□ 1.24
COMMD4-212ENST00000565517 DIP2AQ14689 1571 aa22.82■■□□□ 1.24
COMMD4-212ENST00000565517 KCNA6P17658 529 aa22.82■■□□□ 1.24
COMMD4-212ENST00000565517 CHD2O14647 1828 aaKnown RBP22.81■■□□□ 1.24
COMMD4-212ENST00000565517 LRRC7Q96NW7 1537 aa22.81■■□□□ 1.24
COMMD4-212ENST00000565517 RPGRIP1LQ68CZ1 1315 aa22.81■■□□□ 1.24
COMMD4-212ENST00000565517 ADAMTS13Q76LX8 1427 aa22.8■■□□□ 1.24
COMMD4-212ENST00000565517 NWD1Q149M9 1564 aa22.78■■□□□ 1.24
COMMD4-212ENST00000565517 SETBP1Q9Y6X0 1596 aa22.78■■□□□ 1.24
COMMD4-212ENST00000565517 PIK3R4Q99570 1358 aa22.76■■□□□ 1.23
COMMD4-212ENST00000565517 PPLO60437 1756 aa22.76■■□□□ 1.23
COMMD4-212ENST00000565517 NRXN3Q9Y4C0 1643 aa22.76■■□□□ 1.23
COMMD4-212ENST00000565517 VGFO15240 615 aaPredicted RBP22.76■■□□□ 1.23
COMMD4-212ENST00000565517 XIRP1Q702N8 1843 aaKnown RBP22.75■■□□□ 1.23
COMMD4-212ENST00000565517 SENP3Q9H4L4 574 aaPredicted RBP22.75■■□□□ 1.23
COMMD4-212ENST00000565517 SPATA31E1Q6ZUB1 1445 aa22.74■■□□□ 1.23
COMMD4-212ENST00000565517 NKTRP30414 1462 aaKnown RBP22.74■■□□□ 1.23
COMMD4-212ENST00000565517 UBAP1LF5GYI3 381 aa22.74■■□□□ 1.23
COMMD4-212ENST00000565517 TOM1O60784 492 aa22.72■■□□□ 1.23
COMMD4-212ENST00000565517 ANKRD30BQ9BXX2 1392 aa22.72■■□□□ 1.23
COMMD4-212ENST00000565517 PROSER2Q86WR7 435 aaPredicted RBP22.7■■□□□ 1.22
COMMD4-212ENST00000565517 IFT172Q9UG01 1749 aa22.69■■□□□ 1.22
COMMD4-212ENST00000565517 RGL3Q3MIN7 710 aa22.68■■□□□ 1.22
COMMD4-212ENST00000565517 TMEM94Q12767 1356 aa22.67■■□□□ 1.22
COMMD4-212ENST00000565517 PTPRUQ92729 1446 aa22.65■■□□□ 1.22
COMMD4-212ENST00000565517 NCOA3Q9Y6Q9 1424 aa22.65■■□□□ 1.22
COMMD4-212ENST00000565517 ALKQ9UM73 1620 aa22.64■■□□□ 1.22
COMMD4-212ENST00000565517 TRIM26Q12899 539 aaPredicted RBP22.64■■□□□ 1.21
COMMD4-212ENST00000565517 AMOTL2Q9Y2J4 779 aa22.64■■□□□ 1.21
COMMD4-212ENST00000565517 SETD1AO15047 1707 aaKnown RBP22.64■■□□□ 1.21
COMMD4-212ENST00000565517 METP08581 1390 aa22.63■■□□□ 1.21
COMMD4-212ENST00000565517 XRN1Q8IZH2 1706 aaKnown RBP22.62■■□□□ 1.21
COMMD4-212ENST00000565517 ADGRF5Q8IZF2 1346 aa22.6■■□□□ 1.21
COMMD4-212ENST00000565517 RBM33Q96EV2 1170 aaKnown RBP22.59■■□□□ 1.21
COMMD4-212ENST00000565517 PIP4K2BP78356 416 aa22.58■■□□□ 1.21
COMMD4-212ENST00000565517 MSH6P52701 1360 aa22.57■■□□□ 1.2
COMMD4-212ENST00000565517 MYOM2P54296 1465 aa22.56■■□□□ 1.2
COMMD4-212ENST00000565517 PIK3C2GO75747 1445 aa22.56■■□□□ 1.2
COMMD4-212ENST00000565517 SCAF1Q9H7N4 1312 aaKnown RBP22.56■■□□□ 1.2
COMMD4-212ENST00000565517 NRXN1Q9ULB1 1477 aa22.54■■□□□ 1.2
COMMD4-212ENST00000565517 STAC3Q96MF2 364 aa22.54■■□□□ 1.2
COMMD4-212ENST00000565517 PRAG1Q86YV5 1406 aa22.54■■□□□ 1.2
COMMD4-212ENST00000565517 C19orf44Q9H6X5 657 aa22.53■■□□□ 1.2
COMMD4-212ENST00000565517 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.52■■□□□ 1.2
COMMD4-212ENST00000565517 C14orf37Q86TY3 774 aa22.51■■□□□ 1.19
COMMD4-212ENST00000565517 PTCH1Q13635 1447 aa22.5■■□□□ 1.19
COMMD4-212ENST00000565517 LAMC1P11047 1609 aa22.49■■□□□ 1.19
COMMD4-212ENST00000565517 FAM135BQ49AJ0 1406 aa22.49■■□□□ 1.19
COMMD4-212ENST00000565517 C14orf93Q9H972 538 aaKnown RBP22.49■■□□□ 1.19
COMMD4-212ENST00000565517 CADPS2Q86UW7 1296 aa22.48■■□□□ 1.19
COMMD4-212ENST00000565517 SLAIN2Q9P270 581 aa22.47■■□□□ 1.19
COMMD4-212ENST00000565517 DCCP43146 1447 aa22.47■■□□□ 1.19
COMMD4-212ENST00000565517 HSPA1LP34931 641 aa22.46■■□□□ 1.19
COMMD4-212ENST00000565517 DCAF11Q8TEB1 546 aa22.46■■□□□ 1.19
COMMD4-212ENST00000565517 DHX57Q6P158 1386 aaKnown RBP22.46■■□□□ 1.19
COMMD4-212ENST00000565517 ATF3P18847 181 aa22.45■■□□□ 1.18
COMMD4-212ENST00000565517 ROBO2Q9HCK4 1378 aa22.45■■□□□ 1.18
COMMD4-212ENST00000565517 TECPR2O15040 1411 aa22.44■■□□□ 1.18
COMMD4-212ENST00000565517 LRPPRCP42704 1394 aaKnown RBP22.44■■□□□ 1.18
COMMD4-212ENST00000565517 KNDC1Q76NI1 1749 aa22.44■■□□□ 1.18
COMMD4-212ENST00000565517 ASXL1Q8IXJ9 1541 aa22.44■■□□□ 1.18
COMMD4-212ENST00000565517 ABCC11Q96J66 1382 aa22.44■■□□□ 1.18
COMMD4-212ENST00000565517 ADGRL3Q9HAR2 1447 aa22.44■■□□□ 1.18
COMMD4-212ENST00000565517 ROBO1Q9Y6N7 1651 aa22.43■■□□□ 1.18
COMMD4-212ENST00000565517 CFAP70Q5T0N1 1121 aa22.43■■□□□ 1.18
COMMD4-212ENST00000565517 KDM2AQ9Y2K7 1162 aa22.43■■□□□ 1.18
COMMD4-212ENST00000565517 NALCNQ8IZF0 1738 aa22.43■■□□□ 1.18
COMMD4-212ENST00000565517 TMEM132EQ6IEE7 984 aa22.42■■□□□ 1.18
COMMD4-212ENST00000565517 YTHDC2Q9H6S0 1430 aaKnown RBP22.4■■□□□ 1.18
COMMD4-212ENST00000565517 SIRT1Q96EB6 747 aa22.4■■□□□ 1.18
COMMD4-212ENST00000565517 STK26Q9P289 416 aa22.38■■□□□ 1.17
COMMD4-212ENST00000565517 ADGRB1O14514 1584 aa22.35■■□□□ 1.17
COMMD4-212ENST00000565517 MST1RQ04912 1400 aa22.34■■□□□ 1.17
COMMD4-212ENST00000565517 SIN3AQ96ST3 1273 aa22.34■■□□□ 1.17
COMMD4-212ENST00000565517 KIAA1210Q9ULL0 1709 aa22.34■■□□□ 1.17
COMMD4-212ENST00000565517 DLC1Q96QB1 1528 aa22.32■■□□□ 1.16
COMMD4-212ENST00000565517 WAPLQ7Z5K2 1190 aa22.32■■□□□ 1.16
COMMD4-212ENST00000565517 PHLPP1O60346 1717 aa22.31■■□□□ 1.16
COMMD4-212ENST00000565517 BRINP3Q76B58 766 aa22.3■■□□□ 1.16
COMMD4-212ENST00000565517 CDC42BPGQ6DT37 1551 aa22.29■■□□□ 1.16
COMMD4-212ENST00000565517 NEUROD1Q13562 356 aa22.29■■□□□ 1.16
COMMD4-212ENST00000565517 L3MBTL2Q969R5 705 aa22.29■■□□□ 1.16
COMMD4-212ENST00000565517 AHDC1Q5TGY3 1603 aaPredicted RBP22.28■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms