RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 CCDC144AA2RUR9 1427 aa24.69■■□□□ 1.54
CLK3-207ENST00000562389 HDGFP51858 240 aaKnown RBP24.67■■□□□ 1.54
CLK3-207ENST00000562389 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.66■■□□□ 1.54
CLK3-207ENST00000562389 NEXMIFQ5QGS0 1516 aa24.65■■□□□ 1.54
CLK3-207ENST00000562389 LTBP4Q8N2S1 1624 aa24.64■■□□□ 1.54
CLK3-207ENST00000562389 PLEKHG1Q9ULL1 1385 aa24.64■■□□□ 1.53
CLK3-207ENST00000562389 ANKRD30BQ9BXX2 1392 aa24.62■■□□□ 1.53
CLK3-207ENST00000562389 PPP1R15AO75807 674 aaPredicted RBP24.61■■□□□ 1.53
CLK3-207ENST00000562389 ZNF326Q5BKZ1 582 aaKnown RBP24.61■■□□□ 1.53
CLK3-207ENST00000562389 ILDR1Q86SU0 546 aaPredicted RBP24.61■■□□□ 1.53
CLK3-207ENST00000562389 ZNF335Q9H4Z2 1342 aaPredicted RBP24.61■■□□□ 1.53
CLK3-207ENST00000562389 SPATA31E1Q6ZUB1 1445 aa24.6■■□□□ 1.53
CLK3-207ENST00000562389 PPLO60437 1756 aa24.59■■□□□ 1.53
CLK3-207ENST00000562389 RPGRIP1LQ68CZ1 1315 aa24.57■■□□□ 1.52
CLK3-207ENST00000562389 DIP2AQ14689 1571 aa24.56■■□□□ 1.52
CLK3-207ENST00000562389 NUTM2DQ5VT03 806 aaPredicted RBP24.56■■□□□ 1.52
CLK3-207ENST00000562389 IFT172Q9UG01 1749 aa24.55■■□□□ 1.52
CLK3-207ENST00000562389 CPS1P31327 1500 aa24.55■■□□□ 1.52
CLK3-207ENST00000562389 SETBP1Q9Y6X0 1596 aa24.54■■□□□ 1.52
CLK3-207ENST00000562389 STRCP1A6NGW2 1772 aa24.54■■□□□ 1.52
CLK3-207ENST00000562389 NRXN3Q9Y4C0 1643 aa24.54■■□□□ 1.52
CLK3-207ENST00000562389 ADAMTS13Q76LX8 1427 aa24.52■■□□□ 1.52
CLK3-207ENST00000562389 CERKQ8TCT0 537 aa24.51■■□□□ 1.51
CLK3-207ENST00000562389 BCANQ96GW7 911 aa24.51■■□□□ 1.51
CLK3-207ENST00000562389 SLC26A8Q96RN1 970 aa24.51■■□□□ 1.51
CLK3-207ENST00000562389 IQSEC2Q5JU85 1478 aa24.5■■□□□ 1.51
CLK3-207ENST00000562389 NWD1Q149M9 1564 aa24.49■■□□□ 1.51
CLK3-207ENST00000562389 CHD2O14647 1828 aaKnown RBP24.48■■□□□ 1.51
CLK3-207ENST00000562389 VGFO15240 615 aaPredicted RBP24.48■■□□□ 1.51
CLK3-207ENST00000562389 TBX22Q9Y458 520 aa24.48■■□□□ 1.51
CLK3-207ENST00000562389 DHX57Q6P158 1386 aaKnown RBP24.47■■□□□ 1.51
CLK3-207ENST00000562389 RGL3Q3MIN7 710 aa24.47■■□□□ 1.51
CLK3-207ENST00000562389 SENP3Q9H4L4 574 aaPredicted RBP24.46■■□□□ 1.51
CLK3-207ENST00000562389 PIK3R4Q99570 1358 aa24.44■■□□□ 1.5
CLK3-207ENST00000562389 SETD1AO15047 1707 aaKnown RBP24.44■■□□□ 1.5
CLK3-207ENST00000562389 KCNA6P17658 529 aa24.43■■□□□ 1.5
CLK3-207ENST00000562389 NKTRP30414 1462 aaKnown RBP24.42■■□□□ 1.5
CLK3-207ENST00000562389 MYOM2P54296 1465 aa24.42■■□□□ 1.5
CLK3-207ENST00000562389 LRRC7Q96NW7 1537 aa24.41■■□□□ 1.5
CLK3-207ENST00000562389 PCGF6Q9BYE7 350 aa24.4■■□□□ 1.5
CLK3-207ENST00000562389 ALKQ9UM73 1620 aa24.39■■□□□ 1.5
CLK3-207ENST00000562389 NRXN1Q9ULB1 1477 aa24.38■■□□□ 1.49
CLK3-207ENST00000562389 ADGRF5Q8IZF2 1346 aa24.38■■□□□ 1.49
CLK3-207ENST00000562389 XIRP1Q702N8 1843 aaKnown RBP24.38■■□□□ 1.49
CLK3-207ENST00000562389 PIK3C2GO75747 1445 aa24.37■■□□□ 1.49
CLK3-207ENST00000562389 XRN1Q8IZH2 1706 aaKnown RBP24.37■■□□□ 1.49
CLK3-207ENST00000562389 PTPRUQ92729 1446 aa24.35■■□□□ 1.49
CLK3-207ENST00000562389 METP08581 1390 aa24.35■■□□□ 1.49
CLK3-207ENST00000562389 FBXO41Q8TF61 875 aa24.33■■□□□ 1.49
CLK3-207ENST00000562389 LAMC1P11047 1609 aa24.32■■□□□ 1.48
CLK3-207ENST00000562389 STAC3Q96MF2 364 aa24.31■■□□□ 1.48
CLK3-207ENST00000562389 TMEM94Q12767 1356 aa24.29■■□□□ 1.48
CLK3-207ENST00000562389 AMOTL2Q9Y2J4 779 aa24.29■■□□□ 1.48
CLK3-207ENST00000562389 PROSER2Q86WR7 435 aaPredicted RBP24.28■■□□□ 1.48
CLK3-207ENST00000562389 DCAF11Q8TEB1 546 aa24.28■■□□□ 1.48
CLK3-207ENST00000562389 PRAG1Q86YV5 1406 aa24.27■■□□□ 1.48
CLK3-207ENST00000562389 ASXL1Q8IXJ9 1541 aa24.27■■□□□ 1.48
CLK3-207ENST00000562389 SIN3AQ96ST3 1273 aa24.27■■□□□ 1.48
CLK3-207ENST00000562389 NCOA3Q9Y6Q9 1424 aa24.26■■□□□ 1.47
CLK3-207ENST00000562389 C14orf93Q9H972 538 aaKnown RBP24.24■■□□□ 1.47
CLK3-207ENST00000562389 KDM2AQ9Y2K7 1162 aa24.24■■□□□ 1.47
CLK3-207ENST00000562389 PTCH1Q13635 1447 aa24.24■■□□□ 1.47
CLK3-207ENST00000562389 KNDC1Q76NI1 1749 aa24.24■■□□□ 1.47
CLK3-207ENST00000562389 UBAP1LF5GYI3 381 aa24.2■■□□□ 1.46
CLK3-207ENST00000562389 NEUROD1Q13562 356 aa24.2■■□□□ 1.46
CLK3-207ENST00000562389 CFAP70Q5T0N1 1121 aa24.2■■□□□ 1.46
CLK3-207ENST00000562389 RBM33Q96EV2 1170 aaKnown RBP24.2■■□□□ 1.46
CLK3-207ENST00000562389 TECPR2O15040 1411 aa24.19■■□□□ 1.46
CLK3-207ENST00000562389 KIAA1210Q9ULL0 1709 aa24.18■■□□□ 1.46
CLK3-207ENST00000562389 LRPPRCP42704 1394 aaKnown RBP24.18■■□□□ 1.46
CLK3-207ENST00000562389 TOM1O60784 492 aa24.18■■□□□ 1.46
CLK3-207ENST00000562389 MSH6P52701 1360 aa24.17■■□□□ 1.46
CLK3-207ENST00000562389 ADGRB1O14514 1584 aa24.17■■□□□ 1.46
CLK3-207ENST00000562389 L3MBTL2Q969R5 705 aa24.17■■□□□ 1.46
CLK3-207ENST00000562389 YTHDC2Q9H6S0 1430 aaKnown RBP24.17■■□□□ 1.46
CLK3-207ENST00000562389 ROBO2Q9HCK4 1378 aa24.16■■□□□ 1.46
CLK3-207ENST00000562389 TMEM132EQ6IEE7 984 aa24.16■■□□□ 1.46
CLK3-207ENST00000562389 ABCC11Q96J66 1382 aa24.16■■□□□ 1.46
CLK3-207ENST00000562389 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.15■■□□□ 1.46
CLK3-207ENST00000562389 NALCNQ8IZF0 1738 aa24.14■■□□□ 1.45
CLK3-207ENST00000562389 CLSPNQ9HAW4 1339 aa24.12■■□□□ 1.45
CLK3-207ENST00000562389 ADGRL3Q9HAR2 1447 aa24.12■■□□□ 1.45
CLK3-207ENST00000562389 DCCP43146 1447 aa24.11■■□□□ 1.45
CLK3-207ENST00000562389 C14orf37Q86TY3 774 aa24.11■■□□□ 1.45
CLK3-207ENST00000562389 C19orf44Q9H6X5 657 aa24.11■■□□□ 1.45
CLK3-207ENST00000562389 DLC1Q96QB1 1528 aa24.1■■□□□ 1.45
CLK3-207ENST00000562389 STK26Q9P289 416 aa24.1■■□□□ 1.45
CLK3-207ENST00000562389 TONSLQ96HA7 1378 aa24.09■■□□□ 1.45
CLK3-207ENST00000562389 FAM135BQ49AJ0 1406 aa24.09■■□□□ 1.45
CLK3-207ENST00000562389 SIRT1Q96EB6 747 aa24.07■■□□□ 1.44
CLK3-207ENST00000562389 TRPM1Q7Z4N2 1603 aa24.06■■□□□ 1.44
CLK3-207ENST00000562389 PIP4K2BP78356 416 aa24.06■■□□□ 1.44
CLK3-207ENST00000562389 CADPS2Q86UW7 1296 aa24.06■■□□□ 1.44
CLK3-207ENST00000562389 SCAF1Q9H7N4 1312 aaKnown RBP24.04■■□□□ 1.44
CLK3-207ENST00000562389 ARHGEF28Q8N1W1 1705 aaKnown RBP24.04■■□□□ 1.44
CLK3-207ENST00000562389 ATF3P18847 181 aa24.03■■□□□ 1.44
CLK3-207ENST00000562389 CDC42BPGQ6DT37 1551 aa24.03■■□□□ 1.44
CLK3-207ENST00000562389 PLEKHH1Q9ULM0 1364 aa24.03■■□□□ 1.44
CLK3-207ENST00000562389 ROBO1Q9Y6N7 1651 aa24.02■■□□□ 1.44
CLK3-207ENST00000562389 WAPLQ7Z5K2 1190 aa24.02■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 134.1 ms