RNA–Protein interactions for RNA: ENST00000561749.1

SMPD3-202, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 2

Gene SMPD3, Length 627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-202ENST00000561749 SENP3Q9H4L4 574 aaPredicted RBP34.53■■■■□ 3.12
SMPD3-202ENST00000561749 NUTM2DQ5VT03 806 aaPredicted RBP34.52■■■■□ 3.12
SMPD3-202ENST00000561749 CCDC144AA2RUR9 1427 aa34.51■■■■□ 3.12
SMPD3-202ENST00000561749 ZNF326Q5BKZ1 582 aaKnown RBP34.51■■■■□ 3.12
SMPD3-202ENST00000561749 PPP1R15AO75807 674 aaPredicted RBP34.48■■■■□ 3.11
SMPD3-202ENST00000561749 ZNF335Q9H4Z2 1342 aaPredicted RBP34.48■■■■□ 3.11
SMPD3-202ENST00000561749 HDGFP51858 240 aaKnown RBP34.44■■■■□ 3.1
SMPD3-202ENST00000561749 BCANQ96GW7 911 aa34.43■■■■□ 3.1
SMPD3-202ENST00000561749 NEXMIFQ5QGS0 1516 aa34.43■■■■□ 3.1
SMPD3-202ENST00000561749 LTBP4Q8N2S1 1624 aa34.43■■■■□ 3.1
SMPD3-202ENST00000561749 ABCF1Q8NE71 845 aaKnown RBP eCLIP34.42■■■■□ 3.1
SMPD3-202ENST00000561749 ANKRD30BQ9BXX2 1392 aa34.39■■■■□ 3.1
SMPD3-202ENST00000561749 PLEKHG1Q9ULL1 1385 aa34.39■■■■□ 3.1
SMPD3-202ENST00000561749 SLC26A8Q96RN1 970 aa34.38■■■■□ 3.09
SMPD3-202ENST00000561749 STRCP1A6NGW2 1772 aa34.38■■■■□ 3.09
SMPD3-202ENST00000561749 PPLO60437 1756 aa34.38■■■■□ 3.09
SMPD3-202ENST00000561749 RGL3Q3MIN7 710 aa34.34■■■■□ 3.09
SMPD3-202ENST00000561749 SPATA31E1Q6ZUB1 1445 aa34.34■■■■□ 3.09
SMPD3-202ENST00000561749 CERKQ8TCT0 537 aa34.32■■■■□ 3.08
SMPD3-202ENST00000561749 IFT172Q9UG01 1749 aa34.3■■■■□ 3.08
SMPD3-202ENST00000561749 NRXN3Q9Y4C0 1643 aa34.3■■■■□ 3.08
SMPD3-202ENST00000561749 ADAMTS13Q76LX8 1427 aa34.27■■■■□ 3.08
SMPD3-202ENST00000561749 RPGRIP1LQ68CZ1 1315 aa34.26■■■■□ 3.07
SMPD3-202ENST00000561749 PCGF6Q9BYE7 350 aa34.25■■■■□ 3.07
SMPD3-202ENST00000561749 CPS1P31327 1500 aa34.25■■■■□ 3.07
SMPD3-202ENST00000561749 SETBP1Q9Y6X0 1596 aa34.24■■■■□ 3.07
SMPD3-202ENST00000561749 DIP2AQ14689 1571 aa34.23■■■■□ 3.07
SMPD3-202ENST00000561749 CHD2O14647 1828 aaKnown RBP34.21■■■■□ 3.07
SMPD3-202ENST00000561749 DHX57Q6P158 1386 aaKnown RBP34.21■■■■□ 3.07
SMPD3-202ENST00000561749 VGFO15240 615 aaPredicted RBP34.2■■■■□ 3.07
SMPD3-202ENST00000561749 TBX22Q9Y458 520 aa34.19■■■■□ 3.06
SMPD3-202ENST00000561749 NWD1Q149M9 1564 aa34.16■■■■□ 3.06
SMPD3-202ENST00000561749 ADGRF5Q8IZF2 1346 aa34.15■■■■□ 3.06
SMPD3-202ENST00000561749 KCNA6P17658 529 aa34.14■■■■□ 3.06
SMPD3-202ENST00000561749 LRRC7Q96NW7 1537 aa34.14■■■■□ 3.06
SMPD3-202ENST00000561749 SETD1AO15047 1707 aaKnown RBP34.13■■■■□ 3.05
SMPD3-202ENST00000561749 XIRP1Q702N8 1843 aaKnown RBP34.12■■■■□ 3.05
SMPD3-202ENST00000561749 IQSEC2Q5JU85 1478 aa34.11■■■■□ 3.05
SMPD3-202ENST00000561749 ALKQ9UM73 1620 aa34.11■■■■□ 3.05
SMPD3-202ENST00000561749 METP08581 1390 aa34.08■■■■□ 3.05
SMPD3-202ENST00000561749 PTPRUQ92729 1446 aa34.07■■■■□ 3.04
SMPD3-202ENST00000561749 PIK3R4Q99570 1358 aa34.06■■■■□ 3.04
SMPD3-202ENST00000561749 NKTRP30414 1462 aaKnown RBP34.06■■■■□ 3.04
SMPD3-202ENST00000561749 SIN3AQ96ST3 1273 aa34.05■■■■□ 3.04
SMPD3-202ENST00000561749 MYOM2P54296 1465 aa34.05■■■■□ 3.04
SMPD3-202ENST00000561749 RBM33Q96EV2 1170 aaKnown RBP34.04■■■■□ 3.04
SMPD3-202ENST00000561749 PROSER2Q86WR7 435 aaPredicted RBP34.03■■■■□ 3.04
SMPD3-202ENST00000561749 KDM2AQ9Y2K7 1162 aa34.03■■■■□ 3.04
SMPD3-202ENST00000561749 XRN1Q8IZH2 1706 aaKnown RBP34.03■■■■□ 3.04
SMPD3-202ENST00000561749 DCAF11Q8TEB1 546 aa34.02■■■■□ 3.04
SMPD3-202ENST00000561749 FBXO41Q8TF61 875 aa34.02■■■■□ 3.04
SMPD3-202ENST00000561749 PIK3C2GO75747 1445 aa34.02■■■■□ 3.04
SMPD3-202ENST00000561749 AMOTL2Q9Y2J4 779 aa34.01■■■■□ 3.03
SMPD3-202ENST00000561749 NRXN1Q9ULB1 1477 aa34■■■■□ 3.03
SMPD3-202ENST00000561749 TMEM94Q12767 1356 aa33.99■■■■□ 3.03
SMPD3-202ENST00000561749 NEUROD1Q13562 356 aa33.99■■■■□ 3.03
SMPD3-202ENST00000561749 ILDR1Q86SU0 546 aaPredicted RBP33.98■■■■□ 3.03
SMPD3-202ENST00000561749 UBAP1LF5GYI3 381 aa33.94■■■■□ 3.02
SMPD3-202ENST00000561749 ASXL1Q8IXJ9 1541 aa33.94■■■■□ 3.02
SMPD3-202ENST00000561749 LAMC1P11047 1609 aa33.93■■■■□ 3.02
SMPD3-202ENST00000561749 CFAP70Q5T0N1 1121 aa33.9■■■■□ 3.02
SMPD3-202ENST00000561749 TMEM132EQ6IEE7 984 aa33.89■■■■□ 3.02
SMPD3-202ENST00000561749 C14orf93Q9H972 538 aaKnown RBP33.87■■■■□ 3.01
SMPD3-202ENST00000561749 C14orf37Q86TY3 774 aa33.84■■■■□ 3.01
SMPD3-202ENST00000561749 L3MBTL2Q969R5 705 aa33.84■■■■□ 3.01
SMPD3-202ENST00000561749 STK26Q9P289 416 aa33.84■■■■□ 3.01
SMPD3-202ENST00000561749 TOM1O60784 492 aa33.82■■■■□ 3
SMPD3-202ENST00000561749 STAC3Q96MF2 364 aa33.82■■■■□ 3
SMPD3-202ENST00000561749 ROBO2Q9HCK4 1378 aa33.81■■■■□ 3
SMPD3-202ENST00000561749 KNDC1Q76NI1 1749 aa33.81■■■■□ 3
SMPD3-202ENST00000561749 SIPA1L2Q9P2F8 1722 aaPredicted RBP33.8■■■■□ 3
SMPD3-202ENST00000561749 PIP4K2BP78356 416 aa33.8■■■■□ 3
SMPD3-202ENST00000561749 MSH6P52701 1360 aa33.8■■■■□ 3
SMPD3-202ENST00000561749 SCAF1Q9H7N4 1312 aaKnown RBP33.79■■■■□ 3
SMPD3-202ENST00000561749 PTCH1Q13635 1447 aa33.79■■■■□ 3
SMPD3-202ENST00000561749 LRPPRCP42704 1394 aaKnown RBP33.79■■■■□ 3
SMPD3-202ENST00000561749 YTHDC2Q9H6S0 1430 aaKnown RBP33.79■■■■□ 3
SMPD3-202ENST00000561749 NALCNQ8IZF0 1738 aa33.78■■■■□ 3
SMPD3-202ENST00000561749 NCOA3Q9Y6Q9 1424 aa33.77■■■■□ 3
SMPD3-202ENST00000561749 PRAG1Q86YV5 1406 aa33.76■■■□□ 2.99
SMPD3-202ENST00000561749 ADGRB1O14514 1584 aa33.76■■■□□ 2.99
SMPD3-202ENST00000561749 KIAA1210Q9ULL0 1709 aa33.73■■■□□ 2.99
SMPD3-202ENST00000561749 ABCC11Q96J66 1382 aa33.72■■■□□ 2.99
SMPD3-202ENST00000561749 TECPR2O15040 1411 aa33.71■■■□□ 2.99
SMPD3-202ENST00000561749 TONSLQ96HA7 1378 aa33.71■■■□□ 2.99
SMPD3-202ENST00000561749 C19orf44Q9H6X5 657 aa33.69■■■□□ 2.98
SMPD3-202ENST00000561749 ADGRL3Q9HAR2 1447 aa33.69■■■□□ 2.98
SMPD3-202ENST00000561749 WAPLQ7Z5K2 1190 aa33.68■■■□□ 2.98
SMPD3-202ENST00000561749 PLEKHH1Q9ULM0 1364 aa33.67■■■□□ 2.98
SMPD3-202ENST00000561749 ATF3P18847 181 aa33.64■■■□□ 2.98
SMPD3-202ENST00000561749 CCER1Q8TC90 406 aaPredicted RBP33.63■■■□□ 2.97
SMPD3-202ENST00000561749 TRAK1Q9UPV9 953 aa33.63■■■□□ 2.97
SMPD3-202ENST00000561749 TRPM1Q7Z4N2 1603 aa33.63■■■□□ 2.97
SMPD3-202ENST00000561749 NBPF1Q3BBV0 1214 aa33.62■■■□□ 2.97
SMPD3-202ENST00000561749 ROBO1Q9Y6N7 1651 aa33.61■■■□□ 2.97
SMPD3-202ENST00000561749 DLC1Q96QB1 1528 aa33.6■■■□□ 2.97
SMPD3-202ENST00000561749 ARHGEF28Q8N1W1 1705 aaKnown RBP33.6■■■□□ 2.97
SMPD3-202ENST00000561749 CADPS2Q86UW7 1296 aa33.6■■■□□ 2.97
SMPD3-202ENST00000561749 DCCP43146 1447 aa33.6■■■□□ 2.97
SMPD3-202ENST00000561749 SLAIN2Q9P270 581 aa33.59■■■□□ 2.97
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms