RNA–Protein interactions for RNA: ENST00000561065.1

LMX1B-204, Transcript of LIM homeobox transcription factor 1 beta, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMX1B, Length 1,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1B-204ENST00000561065 PIP4K2BP78356 416 aa24.28■■□□□ 1.48
LMX1B-204ENST00000561065 SLC26A8Q96RN1 970 aa24.28■■□□□ 1.48
LMX1B-204ENST00000561065 PLEKHG1Q9ULL1 1385 aa24.27■■□□□ 1.48
LMX1B-204ENST00000561065 TOM1O60784 492 aa24.27■■□□□ 1.48
LMX1B-204ENST00000561065 SCAF1Q9H7N4 1312 aaKnown RBP24.26■■□□□ 1.47
LMX1B-204ENST00000561065 CLTCL1P53675 1640 aa24.26■■□□□ 1.47
LMX1B-204ENST00000561065 CHD2O14647 1828 aaKnown RBP24.26■■□□□ 1.47
LMX1B-204ENST00000561065 TRPM2O94759 1503 aa24.24■■□□□ 1.47
LMX1B-204ENST00000561065 SENP3Q9H4L4 574 aaPredicted RBP24.24■■□□□ 1.47
LMX1B-204ENST00000561065 NKTRP30414 1462 aaKnown RBP24.24■■□□□ 1.47
LMX1B-204ENST00000561065 DISP3Q9P2K9 1392 aa24.23■■□□□ 1.47
LMX1B-204ENST00000561065 HSPA1LP34931 641 aa24.22■■□□□ 1.47
LMX1B-204ENST00000561065 NRXN3Q9Y4C0 1643 aa24.21■■□□□ 1.47
LMX1B-204ENST00000561065 CHGAP10645 457 aaKnown RBP24.21■■□□□ 1.47
LMX1B-204ENST00000561065 ADAMTS13Q76LX8 1427 aa24.21■■□□□ 1.47
LMX1B-204ENST00000561065 DIP2AQ14689 1571 aa24.2■■□□□ 1.47
LMX1B-204ENST00000561065 KCNA6P17658 529 aa24.2■■□□□ 1.46
LMX1B-204ENST00000561065 TMEM94Q12767 1356 aa24.2■■□□□ 1.46
LMX1B-204ENST00000561065 NUTM2DQ5VT03 806 aaPredicted RBP24.18■■□□□ 1.46
LMX1B-204ENST00000561065 PPP1R15AO75807 674 aaPredicted RBP24.17■■□□□ 1.46
LMX1B-204ENST00000561065 KIF1BO60333 1816 aa24.15■■□□□ 1.46
LMX1B-204ENST00000561065 NEXMIFQ5QGS0 1516 aa24.14■■□□□ 1.46
LMX1B-204ENST00000561065 RBM33Q96EV2 1170 aaKnown RBP24.14■■□□□ 1.46
LMX1B-204ENST00000561065 BCANQ96GW7 911 aa24.14■■□□□ 1.46
LMX1B-204ENST00000561065 MED1Q15648 1581 aaPredicted RBP24.14■■□□□ 1.46
LMX1B-204ENST00000561065 SETBP1Q9Y6X0 1596 aa24.13■■□□□ 1.45
LMX1B-204ENST00000561065 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.12■■□□□ 1.45
LMX1B-204ENST00000561065 ILDR2Q71H61 639 aa24.1■■□□□ 1.45
LMX1B-204ENST00000561065 ROBO1Q9Y6N7 1651 aa24.1■■□□□ 1.45
LMX1B-204ENST00000561065 XRN1Q8IZH2 1706 aaKnown RBP24.1■■□□□ 1.45
LMX1B-204ENST00000561065 HDGFP51858 240 aaKnown RBP24.1■■□□□ 1.45
LMX1B-204ENST00000561065 TBX22Q9Y458 520 aa24.1■■□□□ 1.45
LMX1B-204ENST00000561065 PROSER2Q86WR7 435 aaPredicted RBP24.09■■□□□ 1.45
LMX1B-204ENST00000561065 PTPRUQ92729 1446 aa24.08■■□□□ 1.45
LMX1B-204ENST00000561065 TRIM52Q96A61 297 aa24.07■■□□□ 1.44
LMX1B-204ENST00000561065 SETD1AO15047 1707 aaKnown RBP24.05■■□□□ 1.44
LMX1B-204ENST00000561065 PIK3R4Q99570 1358 aa24.05■■□□□ 1.44
LMX1B-204ENST00000561065 FAM135BQ49AJ0 1406 aa24.04■■□□□ 1.44
LMX1B-204ENST00000561065 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.03■■□□□ 1.44
LMX1B-204ENST00000561065 MSH6P52701 1360 aa24.02■■□□□ 1.44
LMX1B-204ENST00000561065 PPLO60437 1756 aa24.02■■□□□ 1.44
LMX1B-204ENST00000561065 SLC4A1APQ9BWU0 796 aaKnown RBP24.02■■□□□ 1.44
LMX1B-204ENST00000561065 ZNF326Q5BKZ1 582 aaKnown RBP24.01■■□□□ 1.43
LMX1B-204ENST00000561065 FOXD1Q16676 465 aa23.98■■□□□ 1.43
LMX1B-204ENST00000561065 NCOA3Q9Y6Q9 1424 aa23.98■■□□□ 1.43
LMX1B-204ENST00000561065 METP08581 1390 aa23.98■■□□□ 1.43
LMX1B-204ENST00000561065 IFT172Q9UG01 1749 aa23.95■■□□□ 1.42
LMX1B-204ENST00000561065 AMOTL2Q9Y2J4 779 aa23.94■■□□□ 1.42
LMX1B-204ENST00000561065 PHLPP1O60346 1717 aa23.93■■□□□ 1.42
LMX1B-204ENST00000561065 NALCNQ8IZF0 1738 aa23.93■■□□□ 1.42
LMX1B-204ENST00000561065 COL16A1Q07092 1604 aaPredicted RBP23.91■■□□□ 1.42
LMX1B-204ENST00000561065 SETD5Q9C0A6 1442 aa23.9■■□□□ 1.42
LMX1B-204ENST00000561065 SPATA31E1Q6ZUB1 1445 aa23.89■■□□□ 1.42
LMX1B-204ENST00000561065 CCDC144AA2RUR9 1427 aa23.88■■□□□ 1.41
LMX1B-204ENST00000561065 MPHOSPH9Q99550 1183 aa23.88■■□□□ 1.41
LMX1B-204ENST00000561065 SLAIN2Q9P270 581 aa23.88■■□□□ 1.41
LMX1B-204ENST00000561065 C14orf37Q86TY3 774 aa23.86■■□□□ 1.41
LMX1B-204ENST00000561065 AHDC1Q5TGY3 1603 aaPredicted RBP23.86■■□□□ 1.41
LMX1B-204ENST00000561065 DCCP43146 1447 aa23.86■■□□□ 1.41
LMX1B-204ENST00000561065 RAB3GAP2Q9H2M9 1393 aa23.85■■□□□ 1.41
LMX1B-204ENST00000561065 C19orf44Q9H6X5 657 aa23.84■■□□□ 1.41
LMX1B-204ENST00000561065 PRAG1Q86YV5 1406 aa23.84■■□□□ 1.41
LMX1B-204ENST00000561065 RPGRIP1LQ68CZ1 1315 aa23.83■■□□□ 1.41
LMX1B-204ENST00000561065 PTCH1Q13635 1447 aa23.83■■□□□ 1.41
LMX1B-204ENST00000561065 ADGRL3Q9HAR2 1447 aa23.83■■□□□ 1.41
LMX1B-204ENST00000561065 SOCS7O14512 581 aa23.82■■□□□ 1.4
LMX1B-204ENST00000561065 MST1RQ04912 1400 aa23.81■■□□□ 1.4
LMX1B-204ENST00000561065 ASXL1Q8IXJ9 1541 aa23.81■■□□□ 1.4
LMX1B-204ENST00000561065 VGFO15240 615 aaPredicted RBP23.81■■□□□ 1.4
LMX1B-204ENST00000561065 CADPS2Q86UW7 1296 aa23.81■■□□□ 1.4
LMX1B-204ENST00000561065 NHSL1Q5SYE7 1610 aa23.79■■□□□ 1.4
LMX1B-204ENST00000561065 ROBO2Q9HCK4 1378 aa23.79■■□□□ 1.4
LMX1B-204ENST00000561065 ATF3P18847 181 aa23.79■■□□□ 1.4
LMX1B-204ENST00000561065 ADGRF5Q8IZF2 1346 aa23.78■■□□□ 1.4
LMX1B-204ENST00000561065 PHF23Q9BUL5 403 aaPredicted RBP23.77■■□□□ 1.4
LMX1B-204ENST00000561065 SHPRHQ149N8 1683 aa23.76■■□□□ 1.39
LMX1B-204ENST00000561065 BRINP3Q76B58 766 aa23.75■■□□□ 1.39
LMX1B-204ENST00000561065 KNDC1Q76NI1 1749 aa23.75■■□□□ 1.39
LMX1B-204ENST00000561065 PIK3C2GO75747 1445 aa23.75■■□□□ 1.39
LMX1B-204ENST00000561065 RGL3Q3MIN7 710 aa23.74■■□□□ 1.39
LMX1B-204ENST00000561065 RGS17Q9UGC6 210 aaPredicted RBP23.74■■□□□ 1.39
LMX1B-204ENST00000561065 JCADQ9P266 1359 aa23.73■■□□□ 1.39
LMX1B-204ENST00000561065 ANKRD30BQ9BXX2 1392 aa23.73■■□□□ 1.39
LMX1B-204ENST00000561065 LRP6O75581 1613 aa23.72■■□□□ 1.39
LMX1B-204ENST00000561065 ACIN1Q9UKV3 1341 aaKnown RBP23.71■■□□□ 1.39
LMX1B-204ENST00000561065 NRXN1Q9ULB1 1477 aa23.7■■□□□ 1.38
LMX1B-204ENST00000561065 TECPR2O15040 1411 aa23.69■■□□□ 1.38
LMX1B-204ENST00000561065 LAMC1P11047 1609 aa23.68■■□□□ 1.38
LMX1B-204ENST00000561065 MYOM2P54296 1465 aa23.68■■□□□ 1.38
LMX1B-204ENST00000561065 CDC42BPGQ6DT37 1551 aa23.68■■□□□ 1.38
LMX1B-204ENST00000561065 C1orf167Q5SNV9 1468 aa23.67■■□□□ 1.38
LMX1B-204ENST00000561065 LRPPRCP42704 1394 aaKnown RBP23.64■■□□□ 1.37
LMX1B-204ENST00000561065 DDX17Q92841 729 aaKnown RBP23.61■■□□□ 1.37
LMX1B-204ENST00000561065 PLEKHH1Q9ULM0 1364 aa23.6■■□□□ 1.37
LMX1B-204ENST00000561065 YTHDC2Q9H6S0 1430 aaKnown RBP23.6■■□□□ 1.37
LMX1B-204ENST00000561065 TMEM132EQ6IEE7 984 aa23.59■■□□□ 1.37
LMX1B-204ENST00000561065 SPATA31A6Q5VVP1 1343 aa23.59■■□□□ 1.37
LMX1B-204ENST00000561065 POTEAQ6S8J7 498 aa23.59■■□□□ 1.37
LMX1B-204ENST00000561065 ABCC11Q96J66 1382 aa23.58■■□□□ 1.37
LMX1B-204ENST00000561065 FMN2Q9NZ56 1722 aa23.58■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms