RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, humanhuman

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-223ENST00000560445 PLEKHG1Q9ULL1 1385 aa21.27■■□□□ 1
TPM1-223ENST00000560445 RIMS2Q9UQ26 1411 aa21.27■■□□□ 1
TPM1-223ENST00000560445 NKTRP30414 1462 aaKnown RBP21.26■□□□□ 0.99
TPM1-223ENST00000560445 KCNA6P17658 529 aa21.26■□□□□ 0.99
TPM1-223ENST00000560445 ZFYVE9O95405 1425 aa21.26■□□□□ 0.99
TPM1-223ENST00000560445 CHGAP10645 457 aaKnown RBP21.25■□□□□ 0.99
TPM1-223ENST00000560445 MYO5BQ9ULV0 1848 aa21.24■□□□□ 0.99
TPM1-223ENST00000560445 SPHKAPQ2M3C7 1700 aa21.24■□□□□ 0.99
TPM1-223ENST00000560445 DIP2AQ14689 1571 aa21.23■□□□□ 0.99
TPM1-223ENST00000560445 NWD1Q149M9 1564 aa21.23■□□□□ 0.99
TPM1-223ENST00000560445 SLC26A8Q96RN1 970 aa21.22■□□□□ 0.99
TPM1-223ENST00000560445 HFM1A2PYH4 1435 aa21.21■□□□□ 0.99
TPM1-223ENST00000560445 NAIPQ13075 1403 aa21.21■□□□□ 0.99
TPM1-223ENST00000560445 HSPA1LP34931 641 aa21.18■□□□□ 0.98
TPM1-223ENST00000560445 PROSER2Q86WR7 435 aaPredicted RBP21.18■□□□□ 0.98
TPM1-223ENST00000560445 TBX22Q9Y458 520 aa21.18■□□□□ 0.98
TPM1-223ENST00000560445 TMEM94Q12767 1356 aa21.18■□□□□ 0.98
TPM1-223ENST00000560445 PIK3R4Q99570 1358 aa21.18■□□□□ 0.98
TPM1-223ENST00000560445 ACIN1Q9UKV3 1341 aaKnown RBP21.17■□□□□ 0.98
TPM1-223ENST00000560445 XIRP1Q702N8 1843 aaKnown RBP21.15■□□□□ 0.98
TPM1-223ENST00000560445 ALKQ9UM73 1620 aa21.15■□□□□ 0.98
TPM1-223ENST00000560445 TRPM2O94759 1503 aa21.15■□□□□ 0.98
TPM1-223ENST00000560445 MSH6P52701 1360 aa21.15■□□□□ 0.98
TPM1-223ENST00000560445 CHD2O14647 1828 aaKnown RBP21.14■□□□□ 0.97
TPM1-223ENST00000560445 NCOA3Q9Y6Q9 1424 aa21.13■□□□□ 0.97
TPM1-223ENST00000560445 TRIM52Q96A61 297 aa21.12■□□□□ 0.97
TPM1-223ENST00000560445 ZNF326Q5BKZ1 582 aaKnown RBP21.11■□□□□ 0.97
TPM1-223ENST00000560445 KIF1BO60333 1816 aa21.1■□□□□ 0.97
TPM1-223ENST00000560445 FAM135BQ49AJ0 1406 aa21.1■□□□□ 0.97
TPM1-223ENST00000560445 ADAMTS13Q76LX8 1427 aa21.08■□□□□ 0.97
TPM1-223ENST00000560445 MED1Q15648 1581 aaPredicted RBP21.07■□□□□ 0.96
TPM1-223ENST00000560445 SETBP1Q9Y6X0 1596 aa21.07■□□□□ 0.96
TPM1-223ENST00000560445 SLC4A1APQ9BWU0 796 aaKnown RBP21.07■□□□□ 0.96
TPM1-223ENST00000560445 C14orf37Q86TY3 774 aa21.06■□□□□ 0.96
TPM1-223ENST00000560445 CLTCL1P53675 1640 aa21.06■□□□□ 0.96
TPM1-223ENST00000560445 PHF23Q9BUL5 403 aaPredicted RBP21.04■□□□□ 0.96
TPM1-223ENST00000560445 NUTM2DQ5VT03 806 aaPredicted RBP21.03■□□□□ 0.96
TPM1-223ENST00000560445 CADPS2Q86UW7 1296 aa21.01■□□□□ 0.95
TPM1-223ENST00000560445 ROBO1Q9Y6N7 1651 aa21.01■□□□□ 0.95
TPM1-223ENST00000560445 RPGRIP1LQ68CZ1 1315 aa21.01■□□□□ 0.95
TPM1-223ENST00000560445 NEXMIFQ5QGS0 1516 aa21■□□□□ 0.95
TPM1-223ENST00000560445 VGFO15240 615 aaPredicted RBP21■□□□□ 0.95
TPM1-223ENST00000560445 ATF3P18847 181 aa20.99■□□□□ 0.95
TPM1-223ENST00000560445 C19orf44Q9H6X5 657 aa20.99■□□□□ 0.95
TPM1-223ENST00000560445 SLAIN2Q9P270 581 aa20.99■□□□□ 0.95
TPM1-223ENST00000560445 SOCS7O14512 581 aa20.98■□□□□ 0.95
TPM1-223ENST00000560445 AMOTL2Q9Y2J4 779 aa20.98■□□□□ 0.95
TPM1-223ENST00000560445 NRXN3Q9Y4C0 1643 aa20.97■□□□□ 0.95
TPM1-223ENST00000560445 DCCP43146 1447 aa20.97■□□□□ 0.95
TPM1-223ENST00000560445 CCDC144AA2RUR9 1427 aa20.96■□□□□ 0.95
TPM1-223ENST00000560445 XRN1Q8IZH2 1706 aaKnown RBP20.96■□□□□ 0.95
TPM1-223ENST00000560445 ILDR2Q71H61 639 aa20.96■□□□□ 0.95
TPM1-223ENST00000560445 RBM33Q96EV2 1170 aaKnown RBP20.96■□□□□ 0.95
TPM1-223ENST00000560445 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.92■□□□□ 0.94
TPM1-223ENST00000560445 PHLPP1O60346 1717 aa20.91■□□□□ 0.94
TPM1-223ENST00000560445 PTPRUQ92729 1446 aa20.9■□□□□ 0.94
TPM1-223ENST00000560445 SETD5Q9C0A6 1442 aa20.9■□□□□ 0.94
TPM1-223ENST00000560445 MPHOSPH9Q99550 1183 aa20.89■□□□□ 0.93
TPM1-223ENST00000560445 PPLO60437 1756 aa20.89■□□□□ 0.93
TPM1-223ENST00000560445 METP08581 1390 aa20.88■□□□□ 0.93
TPM1-223ENST00000560445 JCADQ9P266 1359 aa20.88■□□□□ 0.93
TPM1-223ENST00000560445 PTCH1Q13635 1447 aa20.87■□□□□ 0.93
TPM1-223ENST00000560445 ANKRD30BQ9BXX2 1392 aa20.87■□□□□ 0.93
TPM1-223ENST00000560445 PRAG1Q86YV5 1406 aa20.86■□□□□ 0.93
TPM1-223ENST00000560445 ADGRL3Q9HAR2 1447 aa20.86■□□□□ 0.93
TPM1-223ENST00000560445 AHDC1Q5TGY3 1603 aaPredicted RBP20.85■□□□□ 0.93
TPM1-223ENST00000560445 COL16A1Q07092 1604 aaPredicted RBP20.82■□□□□ 0.92
TPM1-223ENST00000560445 SETD1AO15047 1707 aaKnown RBP20.81■□□□□ 0.92
TPM1-223ENST00000560445 SPATA31A6Q5VVP1 1343 aa20.8■□□□□ 0.92
TPM1-223ENST00000560445 SPATA31E1Q6ZUB1 1445 aa20.8■□□□□ 0.92
TPM1-223ENST00000560445 FOXD1Q16676 465 aa20.79■□□□□ 0.92
TPM1-223ENST00000560445 NALCNQ8IZF0 1738 aa20.78■□□□□ 0.92
TPM1-223ENST00000560445 IFT172Q9UG01 1749 aa20.78■□□□□ 0.92
TPM1-223ENST00000560445 ASXL1Q8IXJ9 1541 aa20.78■□□□□ 0.92
TPM1-223ENST00000560445 MST1RQ04912 1400 aa20.78■□□□□ 0.92
TPM1-223ENST00000560445 RAB3GAP2Q9H2M9 1393 aa20.77■□□□□ 0.92
TPM1-223ENST00000560445 BRINP3Q76B58 766 aa20.77■□□□□ 0.92
TPM1-223ENST00000560445 SHPRHQ149N8 1683 aa20.77■□□□□ 0.91
TPM1-223ENST00000560445 RGL3Q3MIN7 710 aa20.76■□□□□ 0.91
TPM1-223ENST00000560445 HRCP23327 699 aa20.74■□□□□ 0.91
TPM1-223ENST00000560445 LAMC1P11047 1609 aa20.74■□□□□ 0.91
TPM1-223ENST00000560445 ROBO2Q9HCK4 1378 aa20.73■□□□□ 0.91
TPM1-223ENST00000560445 NHSL1Q5SYE7 1610 aa20.73■□□□□ 0.91
TPM1-223ENST00000560445 MEX3CQ5U5Q3 659 aaKnown RBP20.72■□□□□ 0.91
TPM1-223ENST00000560445 TECPR2O15040 1411 aa20.71■□□□□ 0.91
TPM1-223ENST00000560445 PIK3C2GO75747 1445 aa20.71■□□□□ 0.91
TPM1-223ENST00000560445 MYOM2P54296 1465 aa20.71■□□□□ 0.91
TPM1-223ENST00000560445 ADGRF5Q8IZF2 1346 aa20.71■□□□□ 0.91
TPM1-223ENST00000560445 LRRC59Q96AG4 307 aaKnown RBP20.7■□□□□ 0.9
TPM1-223ENST00000560445 CDC42BPGQ6DT37 1551 aa20.7■□□□□ 0.9
TPM1-223ENST00000560445 LRPPRCP42704 1394 aaKnown RBP20.7■□□□□ 0.9
TPM1-223ENST00000560445 KNDC1Q76NI1 1749 aa20.7■□□□□ 0.9
TPM1-223ENST00000560445 C1orf167Q5SNV9 1468 aa20.69■□□□□ 0.9
TPM1-223ENST00000560445 ABCC11Q96J66 1382 aa20.68■□□□□ 0.9
TPM1-223ENST00000560445 STAC3Q96MF2 364 aa20.67■□□□□ 0.9
TPM1-223ENST00000560445 ZNF772Q68DY9 489 aaPredicted RBP20.66■□□□□ 0.9
TPM1-223ENST00000560445 NRXN1Q9ULB1 1477 aa20.64■□□□□ 0.89
TPM1-223ENST00000560445 DHX57Q6P158 1386 aaKnown RBP20.64■□□□□ 0.89
TPM1-223ENST00000560445 RGS17Q9UGC6 210 aaPredicted RBP20.64■□□□□ 0.89
TPM1-223ENST00000560445 YTHDC2Q9H6S0 1430 aaKnown RBP20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 208.5 ms