RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 IQGAP1P46940 1657 aa13.92□□□□□ -0.18
LDLR-211ENST00000560173 ZFYVE9O95405 1425 aa13.92□□□□□ -0.18
LDLR-211ENST00000560173 HSPA1LP34931 641 aa13.92□□□□□ -0.18
LDLR-211ENST00000560173 TXNDC2Q86VQ3 553 aa13.92□□□□□ -0.18
LDLR-211ENST00000560173 MYO5BQ9ULV0 1848 aa13.92□□□□□ -0.18
LDLR-211ENST00000560173 HRCP23327 699 aa13.91□□□□□ -0.18
LDLR-211ENST00000560173 EID1Q9Y6B2 187 aa13.91□□□□□ -0.18
LDLR-211ENST00000560173 CHGAP10645 457 aaKnown RBP13.9□□□□□ -0.18
LDLR-211ENST00000560173 FOXD1Q16676 465 aa13.9□□□□□ -0.18
LDLR-211ENST00000560173 RIMS2Q9UQ26 1411 aa13.9□□□□□ -0.19
LDLR-211ENST00000560173 SCAF1Q9H7N4 1312 aaKnown RBP13.88□□□□□ -0.19
LDLR-211ENST00000560173 PIP4K2BP78356 416 aa13.87□□□□□ -0.19
LDLR-211ENST00000560173 PLEKHG1Q9ULL1 1385 aa13.85□□□□□ -0.19
LDLR-211ENST00000560173 CCDC144AA2RUR9 1427 aa13.85□□□□□ -0.19
LDLR-211ENST00000560173 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.85□□□□□ -0.19
LDLR-211ENST00000560173 CPS1P31327 1500 aa13.85□□□□□ -0.19
LDLR-211ENST00000560173 PPP1R15AO75807 674 aaPredicted RBP13.84□□□□□ -0.19
LDLR-211ENST00000560173 HDGFP51858 240 aaKnown RBP13.84□□□□□ -0.19
LDLR-211ENST00000560173 KIF1BO60333 1816 aa13.84□□□□□ -0.19
LDLR-211ENST00000560173 TOM1O60784 492 aa13.83□□□□□ -0.2
LDLR-211ENST00000560173 PHF23Q9BUL5 403 aaPredicted RBP13.83□□□□□ -0.2
LDLR-211ENST00000560173 NEXMIFQ5QGS0 1516 aa13.83□□□□□ -0.2
LDLR-211ENST00000560173 ALKQ9UM73 1620 aa13.82□□□□□ -0.2
LDLR-211ENST00000560173 TRIM26Q12899 539 aaPredicted RBP13.82□□□□□ -0.2
LDLR-211ENST00000560173 ZNF326Q5BKZ1 582 aaKnown RBP13.82□□□□□ -0.2
LDLR-211ENST00000560173 SPATA31E1Q6ZUB1 1445 aa13.81□□□□□ -0.2
LDLR-211ENST00000560173 NUTM2DQ5VT03 806 aaPredicted RBP13.81□□□□□ -0.2
LDLR-211ENST00000560173 ANKRD30BQ9BXX2 1392 aa13.81□□□□□ -0.2
LDLR-211ENST00000560173 SLC26A8Q96RN1 970 aa13.8□□□□□ -0.2
LDLR-211ENST00000560173 ADAMTS13Q76LX8 1427 aa13.8□□□□□ -0.2
LDLR-211ENST00000560173 STRCP1A6NGW2 1772 aa13.79□□□□□ -0.2
LDLR-211ENST00000560173 DIP2AQ14689 1571 aa13.79□□□□□ -0.2
LDLR-211ENST00000560173 SETBP1Q9Y6X0 1596 aa13.79□□□□□ -0.2
LDLR-211ENST00000560173 BCANQ96GW7 911 aa13.78□□□□□ -0.2
LDLR-211ENST00000560173 SENP3Q9H4L4 574 aaPredicted RBP13.78□□□□□ -0.2
LDLR-211ENST00000560173 RPGRIP1LQ68CZ1 1315 aa13.78□□□□□ -0.2
LDLR-211ENST00000560173 NRXN3Q9Y4C0 1643 aa13.78□□□□□ -0.2
LDLR-211ENST00000560173 NWD1Q149M9 1564 aa13.77□□□□□ -0.21
LDLR-211ENST00000560173 TBX22Q9Y458 520 aa13.77□□□□□ -0.21
LDLR-211ENST00000560173 PPLO60437 1756 aa13.76□□□□□ -0.21
LDLR-211ENST00000560173 LRRC7Q96NW7 1537 aa13.75□□□□□ -0.21
LDLR-211ENST00000560173 KCNA6P17658 529 aa13.75□□□□□ -0.21
LDLR-211ENST00000560173 VGFO15240 615 aaPredicted RBP13.74□□□□□ -0.21
LDLR-211ENST00000560173 NKTRP30414 1462 aaKnown RBP13.74□□□□□ -0.21
LDLR-211ENST00000560173 IFT172Q9UG01 1749 aa13.73□□□□□ -0.21
LDLR-211ENST00000560173 PIK3R4Q99570 1358 aa13.73□□□□□ -0.21
LDLR-211ENST00000560173 RGL3Q3MIN7 710 aa13.73□□□□□ -0.21
LDLR-211ENST00000560173 CHD2O14647 1828 aaKnown RBP13.71□□□□□ -0.21
LDLR-211ENST00000560173 PTPRUQ92729 1446 aa13.71□□□□□ -0.22
LDLR-211ENST00000560173 ADGRF5Q8IZF2 1346 aa13.7□□□□□ -0.22
LDLR-211ENST00000560173 MYOM2P54296 1465 aa13.7□□□□□ -0.22
LDLR-211ENST00000560173 RGS17Q9UGC6 210 aaPredicted RBP13.7□□□□□ -0.22
LDLR-211ENST00000560173 SETD1AO15047 1707 aaKnown RBP13.7□□□□□ -0.22
LDLR-211ENST00000560173 METP08581 1390 aa13.7□□□□□ -0.22
LDLR-211ENST00000560173 TMEM94Q12767 1356 aa13.7□□□□□ -0.22
LDLR-211ENST00000560173 DHX57Q6P158 1386 aaKnown RBP13.7□□□□□ -0.22
LDLR-211ENST00000560173 XRN1Q8IZH2 1706 aaKnown RBP13.69□□□□□ -0.22
LDLR-211ENST00000560173 NRXN1Q9ULB1 1477 aa13.68□□□□□ -0.22
LDLR-211ENST00000560173 PIK3C2GO75747 1445 aa13.68□□□□□ -0.22
LDLR-211ENST00000560173 XIRP1Q702N8 1843 aaKnown RBP13.68□□□□□ -0.22
LDLR-211ENST00000560173 PROSER2Q86WR7 435 aaPredicted RBP13.67□□□□□ -0.22
LDLR-211ENST00000560173 AMOTL2Q9Y2J4 779 aa13.66□□□□□ -0.22
LDLR-211ENST00000560173 PRAG1Q86YV5 1406 aa13.64□□□□□ -0.23
LDLR-211ENST00000560173 ASXL1Q8IXJ9 1541 aa13.64□□□□□ -0.23
LDLR-211ENST00000560173 RBM33Q96EV2 1170 aaKnown RBP13.64□□□□□ -0.23
LDLR-211ENST00000560173 NCOA3Q9Y6Q9 1424 aa13.64□□□□□ -0.23
LDLR-211ENST00000560173 PTCH1Q13635 1447 aa13.63□□□□□ -0.23
LDLR-211ENST00000560173 DCAF11Q8TEB1 546 aa13.62□□□□□ -0.23
LDLR-211ENST00000560173 LAMC1P11047 1609 aa13.61□□□□□ -0.23
LDLR-211ENST00000560173 STAC3Q96MF2 364 aa13.61□□□□□ -0.23
LDLR-211ENST00000560173 C14orf93Q9H972 538 aaKnown RBP13.61□□□□□ -0.23
LDLR-211ENST00000560173 LRPPRCP42704 1394 aaKnown RBP13.6□□□□□ -0.23
LDLR-211ENST00000560173 MSH6P52701 1360 aa13.6□□□□□ -0.23
LDLR-211ENST00000560173 ROBO2Q9HCK4 1378 aa13.6□□□□□ -0.23
LDLR-211ENST00000560173 TECPR2O15040 1411 aa13.6□□□□□ -0.23
LDLR-211ENST00000560173 PCGF6Q9BYE7 350 aa13.6□□□□□ -0.23
LDLR-211ENST00000560173 CFAP70Q5T0N1 1121 aa13.59□□□□□ -0.23
LDLR-211ENST00000560173 POTEAQ6S8J7 498 aa13.59□□□□□ -0.23
LDLR-211ENST00000560173 SIN3AQ96ST3 1273 aa13.59□□□□□ -0.23
LDLR-211ENST00000560173 KDM2AQ9Y2K7 1162 aa13.59□□□□□ -0.23
LDLR-211ENST00000560173 ADGRB1O14514 1584 aa13.58□□□□□ -0.24
LDLR-211ENST00000560173 ABCC11Q96J66 1382 aa13.58□□□□□ -0.24
LDLR-211ENST00000560173 YTHDC2Q9H6S0 1430 aaKnown RBP13.57□□□□□ -0.24
LDLR-211ENST00000560173 ADGRL3Q9HAR2 1447 aa13.57□□□□□ -0.24
LDLR-211ENST00000560173 KNDC1Q76NI1 1749 aa13.57□□□□□ -0.24
LDLR-211ENST00000560173 TMEM132EQ6IEE7 984 aa13.57□□□□□ -0.24
LDLR-211ENST00000560173 C14orf37Q86TY3 774 aa13.57□□□□□ -0.24
LDLR-211ENST00000560173 DCCP43146 1447 aa13.56□□□□□ -0.24
LDLR-211ENST00000560173 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.56□□□□□ -0.24
LDLR-211ENST00000560173 C19orf44Q9H6X5 657 aa13.56□□□□□ -0.24
LDLR-211ENST00000560173 NEUROD1Q13562 356 aa13.55□□□□□ -0.24
LDLR-211ENST00000560173 L3MBTL2Q969R5 705 aa13.55□□□□□ -0.24
LDLR-211ENST00000560173 STK26Q9P289 416 aa13.55□□□□□ -0.24
LDLR-211ENST00000560173 NALCNQ8IZF0 1738 aa13.55□□□□□ -0.24
LDLR-211ENST00000560173 FAM135BQ49AJ0 1406 aa13.54□□□□□ -0.24
LDLR-211ENST00000560173 CADPS2Q86UW7 1296 aa13.53□□□□□ -0.24
LDLR-211ENST00000560173 ROBO1Q9Y6N7 1651 aa13.53□□□□□ -0.24
LDLR-211ENST00000560173 ATF3P18847 181 aa13.52□□□□□ -0.25
LDLR-211ENST00000560173 SLAIN2Q9P270 581 aa13.52□□□□□ -0.25
LDLR-211ENST00000560173 PLEKHH1Q9ULM0 1364 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms