RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 EID1Q9Y6B2 187 aa13.35□□□□□ -0.27
LDLR-210ENST00000559340 RGL3Q3MIN7 710 aa13.33□□□□□ -0.28
LDLR-210ENST00000559340 ANKLE2Q86XL3 938 aa13.33□□□□□ -0.28
LDLR-210ENST00000559340 SIN3AQ96ST3 1273 aa13.33□□□□□ -0.28
LDLR-210ENST00000559340 IQSEC2Q5JU85 1478 aa13.33□□□□□ -0.28
LDLR-210ENST00000559340 VGFO15240 615 aaPredicted RBP13.32□□□□□ -0.28
LDLR-210ENST00000559340 TIMELESSQ9UNS1 1208 aa13.32□□□□□ -0.28
LDLR-210ENST00000559340 TMEM2Q9UHN6 1383 aa13.32□□□□□ -0.28
LDLR-210ENST00000559340 SPATA31E1Q6ZUB1 1445 aa13.3□□□□□ -0.28
LDLR-210ENST00000559340 SLIT1O75093 1534 aa13.3□□□□□ -0.28
LDLR-210ENST00000559340 PPP1R15AO75807 674 aaPredicted RBP13.3□□□□□ -0.28
LDLR-210ENST00000559340 TXNDC2Q86VQ3 553 aa13.3□□□□□ -0.28
LDLR-210ENST00000559340 TONSLQ96HA7 1378 aa13.3□□□□□ -0.28
LDLR-210ENST00000559340 DISP3Q9P2K9 1392 aa13.3□□□□□ -0.28
LDLR-210ENST00000559340 PPLO60437 1756 aa13.3□□□□□ -0.28
LDLR-210ENST00000559340 RIMS2Q9UQ26 1411 aa13.3□□□□□ -0.28
LDLR-210ENST00000559340 LTBP4Q8N2S1 1624 aa13.29□□□□□ -0.28
LDLR-210ENST00000559340 POLR1AO95602 1720 aaPredicted RBP13.29□□□□□ -0.28
LDLR-210ENST00000559340 ARHGAP23Q9P227 1491 aa13.29□□□□□ -0.28
LDLR-210ENST00000559340 DCAF11Q8TEB1 546 aa13.27□□□□□ -0.29
LDLR-210ENST00000559340 BCANQ96GW7 911 aa13.27□□□□□ -0.29
LDLR-210ENST00000559340 IFT172Q9UG01 1749 aa13.27□□□□□ -0.29
LDLR-210ENST00000559340 ZFYVE9O95405 1425 aa13.26□□□□□ -0.29
LDLR-210ENST00000559340 SCAF11Q99590 1463 aaKnown RBP13.26□□□□□ -0.29
LDLR-210ENST00000559340 NEXMIFQ5QGS0 1516 aa13.25□□□□□ -0.29
LDLR-210ENST00000559340 KDM2AQ9Y2K7 1162 aa13.25□□□□□ -0.29
LDLR-210ENST00000559340 NCKAP5LQ9HCH0 1330 aa13.24□□□□□ -0.29
LDLR-210ENST00000559340 L3MBTL2Q969R5 705 aa13.24□□□□□ -0.29
LDLR-210ENST00000559340 PLEKHG1Q9ULL1 1385 aa13.23□□□□□ -0.29
LDLR-210ENST00000559340 LTKP29376 864 aa13.23□□□□□ -0.29
LDLR-210ENST00000559340 MYOM2P54296 1465 aa13.23□□□□□ -0.29
LDLR-210ENST00000559340 SOCS7O14512 581 aa13.22□□□□□ -0.29
LDLR-210ENST00000559340 NUTM2DQ5VT03 806 aaPredicted RBP13.22□□□□□ -0.29
LDLR-210ENST00000559340 MED14O60244 1454 aa13.22□□□□□ -0.29
LDLR-210ENST00000559340 NPHP4O75161 1426 aaPredicted RBP13.22□□□□□ -0.29
LDLR-210ENST00000559340 IQGAP1P46940 1657 aa13.21□□□□□ -0.29
LDLR-210ENST00000559340 ZNF335Q9H4Z2 1342 aaPredicted RBP13.21□□□□□ -0.29
LDLR-210ENST00000559340 ILDR2Q71H61 639 aa13.21□□□□□ -0.29
LDLR-210ENST00000559340 ZEB1P37275 1124 aaPredicted RBP13.2□□□□□ -0.3
LDLR-210ENST00000559340 ADGRF5Q8IZF2 1346 aa13.19□□□□□ -0.3
LDLR-210ENST00000559340 TBX22Q9Y458 520 aa13.19□□□□□ -0.3
LDLR-210ENST00000559340 LAMC1P11047 1609 aa13.18□□□□□ -0.3
LDLR-210ENST00000559340 UBAP1LF5GYI3 381 aa13.18□□□□□ -0.3
LDLR-210ENST00000559340 DIP2AQ14689 1571 aa13.18□□□□□ -0.3
LDLR-210ENST00000559340 KIAA1210Q9ULL0 1709 aa13.18□□□□□ -0.3
LDLR-210ENST00000559340 SETBP1Q9Y6X0 1596 aa13.17□□□□□ -0.3
LDLR-210ENST00000559340 C14orf93Q9H972 538 aaKnown RBP13.17□□□□□ -0.3
LDLR-210ENST00000559340 NRXN1Q9ULB1 1477 aa13.16□□□□□ -0.3
LDLR-210ENST00000559340 PIK3R4Q99570 1358 aa13.16□□□□□ -0.3
LDLR-210ENST00000559340 PIK3C2GO75747 1445 aa13.15□□□□□ -0.3
LDLR-210ENST00000559340 PRAG1Q86YV5 1406 aa13.14□□□□□ -0.31
LDLR-210ENST00000559340 ALKQ9UM73 1620 aa13.14□□□□□ -0.31
LDLR-210ENST00000559340 SLC26A8Q96RN1 970 aa13.14□□□□□ -0.31
LDLR-210ENST00000559340 CHD2O14647 1828 aaKnown RBP13.13□□□□□ -0.31
LDLR-210ENST00000559340 CFAP70Q5T0N1 1121 aa13.13□□□□□ -0.31
LDLR-210ENST00000559340 NRXN3Q9Y4C0 1643 aa13.13□□□□□ -0.31
LDLR-210ENST00000559340 ADAMTS13Q76LX8 1427 aa13.13□□□□□ -0.31
LDLR-210ENST00000559340 SENP3Q9H4L4 574 aaPredicted RBP13.12□□□□□ -0.31
LDLR-210ENST00000559340 KCNA6P17658 529 aa13.11□□□□□ -0.31
LDLR-210ENST00000559340 CPS1P31327 1500 aa13.11□□□□□ -0.31
LDLR-210ENST00000559340 SETD1AO15047 1707 aaKnown RBP13.1□□□□□ -0.31
LDLR-210ENST00000559340 TRPM1Q7Z4N2 1603 aa13.1□□□□□ -0.31
LDLR-210ENST00000559340 TOM1O60784 492 aa13.1□□□□□ -0.31
LDLR-210ENST00000559340 NBPF8Q3BBV2 869 aa13.1□□□□□ -0.31
LDLR-210ENST00000559340 ROCK2O75116 1388 aaKnown RBP13.08□□□□□ -0.31
LDLR-210ENST00000559340 AMOTL2Q9Y2J4 779 aa13.08□□□□□ -0.32
LDLR-210ENST00000559340 LRPPRCP42704 1394 aaKnown RBP13.07□□□□□ -0.32
LDLR-210ENST00000559340 TMEM132EQ6IEE7 984 aa13.07□□□□□ -0.32
LDLR-210ENST00000559340 SIRT1Q96EB6 747 aa13.07□□□□□ -0.32
LDLR-210ENST00000559340 CARD11Q9BXL7 1154 aa13.07□□□□□ -0.32
LDLR-210ENST00000559340 RALGAPBQ86X10 1494 aa13.07□□□□□ -0.32
LDLR-210ENST00000559340 METP08581 1390 aa13.07□□□□□ -0.32
LDLR-210ENST00000559340 ABCC11Q96J66 1382 aa13.07□□□□□ -0.32
LDLR-210ENST00000559340 YTHDC2Q9H6S0 1430 aaKnown RBP13.06□□□□□ -0.32
LDLR-210ENST00000559340 KNDC1Q76NI1 1749 aa13.06□□□□□ -0.32
LDLR-210ENST00000559340 NBPF1Q3BBV0 1214 aa13.06□□□□□ -0.32
LDLR-210ENST00000559340 STK26Q9P289 416 aa13.06□□□□□ -0.32
LDLR-210ENST00000559340 SCAF1Q9H7N4 1312 aaKnown RBP13.05□□□□□ -0.32
LDLR-210ENST00000559340 GPRASP1Q5JY77 1395 aa13.05□□□□□ -0.32
LDLR-210ENST00000559340 NWD1Q149M9 1564 aa13.04□□□□□ -0.32
LDLR-210ENST00000559340 SLC24A1O60721 1099 aa13.04□□□□□ -0.32
LDLR-210ENST00000559340 PROSER2Q86WR7 435 aaPredicted RBP13.04□□□□□ -0.32
LDLR-210ENST00000559340 EIF3AQ14152 1382 aaKnown RBP13.04□□□□□ -0.32
LDLR-210ENST00000559340 NKTRP30414 1462 aaKnown RBP13.04□□□□□ -0.32
LDLR-210ENST00000559340 ADGRB1O14514 1584 aa13.03□□□□□ -0.32
LDLR-210ENST00000559340 XRN1Q8IZH2 1706 aaKnown RBP13.03□□□□□ -0.32
LDLR-210ENST00000559340 HSPA1LP34931 641 aa13.03□□□□□ -0.32
LDLR-210ENST00000559340 PIP4K2BP78356 416 aa13.03□□□□□ -0.32
LDLR-210ENST00000559340 POGKQ9P215 609 aa13.03□□□□□ -0.32
LDLR-210ENST00000559340 TRAK1Q9UPV9 953 aa13.03□□□□□ -0.32
LDLR-210ENST00000559340 DLC1Q96QB1 1528 aa13.03□□□□□ -0.32
LDLR-210ENST00000559340 TECPR2O15040 1411 aa13.02□□□□□ -0.33
LDLR-210ENST00000559340 PTPRUQ92729 1446 aa13.02□□□□□ -0.33
LDLR-210ENST00000559340 STRCP1A6NGW2 1772 aa13.02□□□□□ -0.33
LDLR-210ENST00000559340 PTCH1Q13635 1447 aa13.01□□□□□ -0.33
LDLR-210ENST00000559340 FAM135BQ49AJ0 1406 aa13.01□□□□□ -0.33
LDLR-210ENST00000559340 NCOA3Q9Y6Q9 1424 aa13.01□□□□□ -0.33
LDLR-210ENST00000559340 ASXL1Q8IXJ9 1541 aa13.01□□□□□ -0.33
LDLR-210ENST00000559340 C14orf37Q86TY3 774 aa13□□□□□ -0.33
LDLR-210ENST00000559340 ARHGEF28Q8N1W1 1705 aaKnown RBP12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 84.6 ms