RNA–Protein interactions for RNA: ENST00000559276.5

USP3-212, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 554 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-212ENST00000559276 RBM33Q96EV2 1170 aaKnown RBP9.03□□□□□ -0.96
USP3-212ENST00000559276 RGS17Q9UGC6 210 aaPredicted RBP9.03□□□□□ -0.96
USP3-212ENST00000559276 FAM135BQ49AJ0 1406 aa9.03□□□□□ -0.96
USP3-212ENST00000559276 CHD2O14647 1828 aaKnown RBP9.03□□□□□ -0.96
USP3-212ENST00000559276 ROBO1Q9Y6N7 1651 aa9.02□□□□□ -0.97
USP3-212ENST00000559276 FAM50AQ14320 339 aaKnown RBP9.02□□□□□ -0.97
USP3-212ENST00000559276 SLC52A1Q9NWF4 448 aa9.02□□□□□ -0.97
USP3-212ENST00000559276 NKTRP30414 1462 aaKnown RBP9.02□□□□□ -0.97
USP3-212ENST00000559276 IQGAP3Q86VI3 1631 aa9.02□□□□□ -0.97
USP3-212ENST00000559276 STAG3Q9UJ98 1225 aa9.01□□□□□ -0.97
USP3-212ENST00000559276 PLEKHG1Q9ULL1 1385 aa9□□□□□ -0.97
USP3-212ENST00000559276 RIMS2Q9UQ26 1411 aa9□□□□□ -0.97
USP3-212ENST00000559276 ROCK1Q13464 1354 aa8.99□□□□□ -0.97
USP3-212ENST00000559276 ADAMTS13Q76LX8 1427 aa8.99□□□□□ -0.97
USP3-212ENST00000559276 PROSER2Q86WR7 435 aaPredicted RBP8.99□□□□□ -0.97
USP3-212ENST00000559276 NRXN3Q9Y4C0 1643 aa8.97□□□□□ -0.97
USP3-212ENST00000559276 COL16A1Q07092 1604 aaPredicted RBP8.96□□□□□ -0.98
USP3-212ENST00000559276 SLC24A1O60721 1099 aa8.96□□□□□ -0.98
USP3-212ENST00000559276 PHF23Q9BUL5 403 aaPredicted RBP8.96□□□□□ -0.98
USP3-212ENST00000559276 TBX22Q9Y458 520 aa8.96□□□□□ -0.98
USP3-212ENST00000559276 PHLPP1O60346 1717 aa8.96□□□□□ -0.98
USP3-212ENST00000559276 SIPA1L2Q9P2F8 1722 aaPredicted RBP8.96□□□□□ -0.98
USP3-212ENST00000559276 NUTM2DQ5VT03 806 aaPredicted RBP8.95□□□□□ -0.98
USP3-212ENST00000559276 POTEAQ6S8J7 498 aa8.95□□□□□ -0.98
USP3-212ENST00000559276 SLAIN2Q9P270 581 aa8.95□□□□□ -0.98
USP3-212ENST00000559276 PTPRUQ92729 1446 aa8.95□□□□□ -0.98
USP3-212ENST00000559276 DIP2AQ14689 1571 aa8.95□□□□□ -0.98
USP3-212ENST00000559276 SPHKAPQ2M3C7 1700 aa8.94□□□□□ -0.98
USP3-212ENST00000559276 NUP155O75694 1391 aa8.94□□□□□ -0.98
USP3-212ENST00000559276 MSH6P52701 1360 aa8.94□□□□□ -0.98
USP3-212ENST00000559276 XRN1Q8IZH2 1706 aaKnown RBP8.94□□□□□ -0.98
USP3-212ENST00000559276 PPARGC1BQ86YN6 1023 aaKnown RBP8.93□□□□□ -0.98
USP3-212ENST00000559276 BCANQ96GW7 911 aa8.93□□□□□ -0.98
USP3-212ENST00000559276 NCOA3Q9Y6Q9 1424 aa8.93□□□□□ -0.98
USP3-212ENST00000559276 LRP6O75581 1613 aa8.92□□□□□ -0.98
USP3-212ENST00000559276 SETBP1Q9Y6X0 1596 aa8.92□□□□□ -0.98
USP3-212ENST00000559276 PIK3R4Q99570 1358 aa8.92□□□□□ -0.98
USP3-212ENST00000559276 PPP1R15AO75807 674 aaPredicted RBP8.92□□□□□ -0.98
USP3-212ENST00000559276 CHGAP10645 457 aaKnown RBP8.92□□□□□ -0.98
USP3-212ENST00000559276 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.92□□□□□ -0.98
USP3-212ENST00000559276 PCGF6Q9BYE7 350 aa8.92□□□□□ -0.98
USP3-212ENST00000559276 CLTCL1P53675 1640 aa8.91□□□□□ -0.98
USP3-212ENST00000559276 AHDC1Q5TGY3 1603 aaPredicted RBP8.91□□□□□ -0.98
USP3-212ENST00000559276 TRPM2O94759 1503 aa8.91□□□□□ -0.98
USP3-212ENST00000559276 ZEB1P37275 1124 aaPredicted RBP8.91□□□□□ -0.98
USP3-212ENST00000559276 ITGAEP38570 1179 aa8.91□□□□□ -0.98
USP3-212ENST00000559276 JCADQ9P266 1359 aa8.9□□□□□ -0.98
USP3-212ENST00000559276 HDGFP51858 240 aaKnown RBP8.9□□□□□ -0.98
USP3-212ENST00000559276 SETD1AO15047 1707 aaKnown RBP8.9□□□□□ -0.98
USP3-212ENST00000559276 SHPRHQ149N8 1683 aa8.9□□□□□ -0.98
USP3-212ENST00000559276 NEXMIFQ5QGS0 1516 aa8.9□□□□□ -0.99
USP3-212ENST00000559276 RRBP1Q9P2E9 1410 aaKnown RBP8.89□□□□□ -0.99
USP3-212ENST00000559276 METP08581 1390 aa8.89□□□□□ -0.99
USP3-212ENST00000559276 TRIM26Q12899 539 aaPredicted RBP8.89□□□□□ -0.99
USP3-212ENST00000559276 C19orf44Q9H6X5 657 aa8.89□□□□□ -0.99
USP3-212ENST00000559276 AMOTL2Q9Y2J4 779 aa8.89□□□□□ -0.99
USP3-212ENST00000559276 NAIPQ13075 1403 aa8.88□□□□□ -0.99
USP3-212ENST00000559276 NALCNQ8IZF0 1738 aa8.88□□□□□ -0.99
USP3-212ENST00000559276 NHSL1Q5SYE7 1610 aa8.87□□□□□ -0.99
USP3-212ENST00000559276 BRINP3Q76B58 766 aa8.87□□□□□ -0.99
USP3-212ENST00000559276 CADPS2Q86UW7 1296 aa8.87□□□□□ -0.99
USP3-212ENST00000559276 DCCP43146 1447 aa8.87□□□□□ -0.99
USP3-212ENST00000559276 MST1RQ04912 1400 aa8.87□□□□□ -0.99
USP3-212ENST00000559276 ASXL1Q8IXJ9 1541 aa8.86□□□□□ -0.99
USP3-212ENST00000559276 PELP1Q8IZL8 1130 aaKnown RBP8.86□□□□□ -0.99
USP3-212ENST00000559276 KIF1BO60333 1816 aa8.86□□□□□ -0.99
USP3-212ENST00000559276 ATF3P18847 181 aa8.85□□□□□ -0.99
USP3-212ENST00000559276 C14orf37Q86TY3 774 aa8.85□□□□□ -0.99
USP3-212ENST00000559276 SPATA31A6Q5VVP1 1343 aa8.84□□□□□ -0.99
USP3-212ENST00000559276 SETD5Q9C0A6 1442 aa8.84□□□□□ -0.99
USP3-212ENST00000559276 ADGRL3Q9HAR2 1447 aa8.84□□□□□ -0.99
USP3-212ENST00000559276 PPLO60437 1756 aa8.84□□□□□ -1
USP3-212ENST00000559276 LAMC1P11047 1609 aa8.83□□□□□ -1
USP3-212ENST00000559276 HFM1A2PYH4 1435 aa8.82□□□□□ -1
USP3-212ENST00000559276 PRAG1Q86YV5 1406 aa8.82□□□□□ -1
USP3-212ENST00000559276 ZNF326Q5BKZ1 582 aaKnown RBP8.82□□□□□ -1
USP3-212ENST00000559276 DDX17Q92841 729 aaKnown RBP8.82□□□□□ -1
USP3-212ENST00000559276 ROBO2Q9HCK4 1378 aa8.82□□□□□ -1
USP3-212ENST00000559276 PTCH1Q13635 1447 aa8.8□□□□□ -1
USP3-212ENST00000559276 PNPLA6Q8IY17 1366 aa8.8□□□□□ -1
USP3-212ENST00000559276 C1orf167Q5SNV9 1468 aa8.8□□□□□ -1
USP3-212ENST00000559276 NUTM2BA6NNL0 878 aaPredicted RBP8.79□□□□□ -1
USP3-212ENST00000559276 NUTM2EB1AL46 878 aaPredicted RBP8.79□□□□□ -1
USP3-212ENST00000559276 NUTM2AQ8IVF1 878 aaPredicted RBP8.79□□□□□ -1
USP3-212ENST00000559276 IFT172Q9UG01 1749 aa8.79□□□□□ -1
USP3-212ENST00000559276 ZNF772Q68DY9 489 aaPredicted RBP8.78□□□□□ -1
USP3-212ENST00000559276 UPF1Q92900 1129 aaKnown RBP eCLIP8.78□□□□□ -1
USP3-212ENST00000559276 CDK12Q9NYV4 1490 aaPredicted RBP8.77□□□□□ -1
USP3-212ENST00000559276 VGFO15240 615 aaPredicted RBP8.77□□□□□ -1.01
USP3-212ENST00000559276 FOXD1Q16676 465 aa8.77□□□□□ -1.01
USP3-212ENST00000559276 MEX3CQ5U5Q3 659 aaKnown RBP8.77□□□□□ -1.01
USP3-212ENST00000559276 TRIM52Q96A61 297 aa8.77□□□□□ -1.01
USP3-212ENST00000559276 LRRC59Q96AG4 307 aaKnown RBP8.77□□□□□ -1.01
USP3-212ENST00000559276 ORAI2Q96SN7 254 aa8.77□□□□□ -1.01
USP3-212ENST00000559276 SPATA31E1Q6ZUB1 1445 aa8.77□□□□□ -1.01
USP3-212ENST00000559276 AFF2P51816 1311 aa8.77□□□□□ -1.01
USP3-212ENST00000559276 SOS2Q07890 1332 aaPredicted RBP8.77□□□□□ -1.01
USP3-212ENST00000559276 RPGRIP1LQ68CZ1 1315 aa8.77□□□□□ -1.01
USP3-212ENST00000559276 COL22A1Q8NFW1 1626 aaPredicted RBP8.76□□□□□ -1.01
USP3-212ENST00000559276 SLC4A1APQ9BWU0 796 aaKnown RBP8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms