RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 KCNA6P17658 529 aa16.97■□□□□ 0.31
CCDC88C-213ENST00000557455 ITGAEP38570 1179 aa16.97■□□□□ 0.31
CCDC88C-213ENST00000557455 PPARGC1BQ86YN6 1023 aaKnown RBP16.97■□□□□ 0.31
CCDC88C-213ENST00000557455 TMEM131LA2VDJ0 1609 aa16.96■□□□□ 0.31
CCDC88C-213ENST00000557455 HDGFP51858 240 aaKnown RBP16.95■□□□□ 0.3
CCDC88C-213ENST00000557455 TMEM94Q12767 1356 aa16.94■□□□□ 0.3
CCDC88C-213ENST00000557455 ZFYVE9O95405 1425 aa16.94■□□□□ 0.3
CCDC88C-213ENST00000557455 NWD1Q149M9 1564 aa16.94■□□□□ 0.3
CCDC88C-213ENST00000557455 PPP1R15AO75807 674 aaPredicted RBP16.93■□□□□ 0.3
CCDC88C-213ENST00000557455 CHGAP10645 457 aaKnown RBP16.93■□□□□ 0.3
CCDC88C-213ENST00000557455 PROSER2Q86WR7 435 aaPredicted RBP16.93■□□□□ 0.3
CCDC88C-213ENST00000557455 RIMS2Q9UQ26 1411 aa16.93■□□□□ 0.3
CCDC88C-213ENST00000557455 NUP155O75694 1391 aa16.92■□□□□ 0.3
CCDC88C-213ENST00000557455 PLEKHG1Q9ULL1 1385 aa16.92■□□□□ 0.3
CCDC88C-213ENST00000557455 CHD2O14647 1828 aaKnown RBP16.92■□□□□ 0.3
CCDC88C-213ENST00000557455 NKTRP30414 1462 aaKnown RBP16.92■□□□□ 0.3
CCDC88C-213ENST00000557455 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.9■□□□□ 0.3
CCDC88C-213ENST00000557455 RBM33Q96EV2 1170 aaKnown RBP16.9■□□□□ 0.3
CCDC88C-213ENST00000557455 PHF23Q9BUL5 403 aaPredicted RBP16.9■□□□□ 0.3
CCDC88C-213ENST00000557455 FAM135BQ49AJ0 1406 aa16.88■□□□□ 0.29
CCDC88C-213ENST00000557455 ROBO1Q9Y6N7 1651 aa16.88■□□□□ 0.29
CCDC88C-213ENST00000557455 NUTM2DQ5VT03 806 aaPredicted RBP16.86■□□□□ 0.29
CCDC88C-213ENST00000557455 TBX22Q9Y458 520 aa16.86■□□□□ 0.29
CCDC88C-213ENST00000557455 SPHKAPQ2M3C7 1700 aa16.86■□□□□ 0.29
CCDC88C-213ENST00000557455 MSH6P52701 1360 aa16.86■□□□□ 0.29
CCDC88C-213ENST00000557455 DIP2AQ14689 1571 aa16.84■□□□□ 0.29
CCDC88C-213ENST00000557455 ADAMTS13Q76LX8 1427 aa16.82■□□□□ 0.28
CCDC88C-213ENST00000557455 RRBP1Q9P2E9 1410 aaKnown RBP16.82■□□□□ 0.28
CCDC88C-213ENST00000557455 SLAIN2Q9P270 581 aa16.8■□□□□ 0.28
CCDC88C-213ENST00000557455 TRPM2O94759 1503 aa16.8■□□□□ 0.28
CCDC88C-213ENST00000557455 NCOA3Q9Y6Q9 1424 aa16.79■□□□□ 0.28
CCDC88C-213ENST00000557455 PIK3R4Q99570 1358 aa16.79■□□□□ 0.28
CCDC88C-213ENST00000557455 C14orf37Q86TY3 774 aa16.79■□□□□ 0.28
CCDC88C-213ENST00000557455 PHLPP1O60346 1717 aa16.79■□□□□ 0.28
CCDC88C-213ENST00000557455 ZNF326Q5BKZ1 582 aaKnown RBP16.78■□□□□ 0.28
CCDC88C-213ENST00000557455 NAIPQ13075 1403 aa16.78■□□□□ 0.28
CCDC88C-213ENST00000557455 KIF1BO60333 1816 aa16.77■□□□□ 0.27
CCDC88C-213ENST00000557455 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.76■□□□□ 0.27
CCDC88C-213ENST00000557455 CLTCL1P53675 1640 aa16.76■□□□□ 0.27
CCDC88C-213ENST00000557455 NRXN3Q9Y4C0 1643 aa16.75■□□□□ 0.27
CCDC88C-213ENST00000557455 AMOTL2Q9Y2J4 779 aa16.75■□□□□ 0.27
CCDC88C-213ENST00000557455 SETBP1Q9Y6X0 1596 aa16.74■□□□□ 0.27
CCDC88C-213ENST00000557455 C19orf44Q9H6X5 657 aa16.74■□□□□ 0.27
CCDC88C-213ENST00000557455 PTPRUQ92729 1446 aa16.73■□□□□ 0.27
CCDC88C-213ENST00000557455 ATF3P18847 181 aa16.73■□□□□ 0.27
CCDC88C-213ENST00000557455 CADPS2Q86UW7 1296 aa16.73■□□□□ 0.27
CCDC88C-213ENST00000557455 RGS17Q9UGC6 210 aaPredicted RBP16.73■□□□□ 0.27
CCDC88C-213ENST00000557455 XRN1Q8IZH2 1706 aaKnown RBP16.71■□□□□ 0.27
CCDC88C-213ENST00000557455 TRIM52Q96A61 297 aa16.71■□□□□ 0.27
CCDC88C-213ENST00000557455 HFM1A2PYH4 1435 aa16.7■□□□□ 0.26
CCDC88C-213ENST00000557455 NEXMIFQ5QGS0 1516 aa16.7■□□□□ 0.26
CCDC88C-213ENST00000557455 JCADQ9P266 1359 aa16.7■□□□□ 0.26
CCDC88C-213ENST00000557455 COL16A1Q07092 1604 aaPredicted RBP16.7■□□□□ 0.26
CCDC88C-213ENST00000557455 METP08581 1390 aa16.67■□□□□ 0.26
CCDC88C-213ENST00000557455 AHDC1Q5TGY3 1603 aaPredicted RBP16.67■□□□□ 0.26
CCDC88C-213ENST00000557455 SLC4A1APQ9BWU0 796 aaKnown RBP16.66■□□□□ 0.26
CCDC88C-213ENST00000557455 DCCP43146 1447 aa16.65■□□□□ 0.26
CCDC88C-213ENST00000557455 POTEAQ6S8J7 498 aa16.64■□□□□ 0.25
CCDC88C-213ENST00000557455 SHPRHQ149N8 1683 aa16.63■□□□□ 0.25
CCDC88C-213ENST00000557455 VGFO15240 615 aaPredicted RBP16.63■□□□□ 0.25
CCDC88C-213ENST00000557455 BRINP3Q76B58 766 aa16.63■□□□□ 0.25
CCDC88C-213ENST00000557455 SPATA31A6Q5VVP1 1343 aa16.62■□□□□ 0.25
CCDC88C-213ENST00000557455 SETD1AO15047 1707 aaKnown RBP16.62■□□□□ 0.25
CCDC88C-213ENST00000557455 NALCNQ8IZF0 1738 aa16.62■□□□□ 0.25
CCDC88C-213ENST00000557455 PPLO60437 1756 aa16.61■□□□□ 0.25
CCDC88C-213ENST00000557455 MST1RQ04912 1400 aa16.61■□□□□ 0.25
CCDC88C-213ENST00000557455 RPGRIP1LQ68CZ1 1315 aa16.6■□□□□ 0.25
CCDC88C-213ENST00000557455 ADGRL3Q9HAR2 1447 aa16.6■□□□□ 0.25
CCDC88C-213ENST00000557455 ASXL1Q8IXJ9 1541 aa16.6■□□□□ 0.25
CCDC88C-213ENST00000557455 NHSL1Q5SYE7 1610 aa16.59■□□□□ 0.25
CCDC88C-213ENST00000557455 MEX3CQ5U5Q3 659 aaKnown RBP16.59■□□□□ 0.25
CCDC88C-213ENST00000557455 LRP6O75581 1613 aa16.59■□□□□ 0.25
CCDC88C-213ENST00000557455 FOXD1Q16676 465 aa16.57■□□□□ 0.24
CCDC88C-213ENST00000557455 PTCH1Q13635 1447 aa16.56■□□□□ 0.24
CCDC88C-213ENST00000557455 CCDC144AA2RUR9 1427 aa16.54■□□□□ 0.24
CCDC88C-213ENST00000557455 SETD5Q9C0A6 1442 aa16.53■□□□□ 0.24
CCDC88C-213ENST00000557455 ROBO2Q9HCK4 1378 aa16.53■□□□□ 0.24
CCDC88C-213ENST00000557455 NUTM2BA6NNL0 878 aaPredicted RBP16.53■□□□□ 0.24
CCDC88C-213ENST00000557455 NUTM2EB1AL46 878 aaPredicted RBP16.53■□□□□ 0.24
CCDC88C-213ENST00000557455 ZNF772Q68DY9 489 aaPredicted RBP16.53■□□□□ 0.24
CCDC88C-213ENST00000557455 NUTM2AQ8IVF1 878 aaPredicted RBP16.53■□□□□ 0.24
CCDC88C-213ENST00000557455 LRRC59Q96AG4 307 aaKnown RBP16.53■□□□□ 0.24
CCDC88C-213ENST00000557455 MPHOSPH9Q99550 1183 aa16.53■□□□□ 0.24
CCDC88C-213ENST00000557455 IFT172Q9UG01 1749 aa16.51■□□□□ 0.23
CCDC88C-213ENST00000557455 C1orf167Q5SNV9 1468 aa16.51■□□□□ 0.23
CCDC88C-213ENST00000557455 RGL3Q3MIN7 710 aa16.51■□□□□ 0.23
CCDC88C-213ENST00000557455 DDX17Q92841 729 aaKnown RBP16.51■□□□□ 0.23
CCDC88C-213ENST00000557455 PRAG1Q86YV5 1406 aa16.51■□□□□ 0.23
CCDC88C-213ENST00000557455 LAMC1P11047 1609 aa16.48■□□□□ 0.23
CCDC88C-213ENST00000557455 ADGRF5Q8IZF2 1346 aa16.48■□□□□ 0.23
CCDC88C-213ENST00000557455 SPATA31E1Q6ZUB1 1445 aa16.48■□□□□ 0.23
CCDC88C-213ENST00000557455 ANKRD30BQ9BXX2 1392 aa16.48■□□□□ 0.23
CCDC88C-213ENST00000557455 ACIN1Q9UKV3 1341 aaKnown RBP16.47■□□□□ 0.23
CCDC88C-213ENST00000557455 ORAI2Q96SN7 254 aa16.46■□□□□ 0.23
CCDC88C-213ENST00000557455 PNPLA6Q8IY17 1366 aa16.46■□□□□ 0.23
CCDC88C-213ENST00000557455 AFF2P51816 1311 aa16.45■□□□□ 0.22
CCDC88C-213ENST00000557455 CDC42BPGQ6DT37 1551 aa16.44■□□□□ 0.22
CCDC88C-213ENST00000557455 RXRBP28702 533 aa16.44■□□□□ 0.22
CCDC88C-213ENST00000557455 STK26Q9P289 416 aa16.44■□□□□ 0.22
CCDC88C-213ENST00000557455 KNDC1Q76NI1 1749 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms