RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 ZNF335Q9H4Z2 1342 aaPredicted RBP15.82■□□□□ 0.12
LINC00239-201ENST00000556973 LTBP4Q8N2S1 1624 aa15.82■□□□□ 0.12
LINC00239-201ENST00000556973 ZFYVE9O95405 1425 aa15.81■□□□□ 0.12
LINC00239-201ENST00000556973 RIMS2Q9UQ26 1411 aa15.81■□□□□ 0.12
LINC00239-201ENST00000556973 PPP1R15AO75807 674 aaPredicted RBP15.79■□□□□ 0.12
LINC00239-201ENST00000556973 ZNF326Q5BKZ1 582 aaKnown RBP15.79■□□□□ 0.12
LINC00239-201ENST00000556973 BCANQ96GW7 911 aa15.78■□□□□ 0.12
LINC00239-201ENST00000556973 PLEKHG1Q9ULL1 1385 aa15.77■□□□□ 0.12
LINC00239-201ENST00000556973 TRIM26Q12899 539 aaPredicted RBP15.76■□□□□ 0.11
LINC00239-201ENST00000556973 CCDC144AA2RUR9 1427 aa15.76■□□□□ 0.11
LINC00239-201ENST00000556973 CPS1P31327 1500 aa15.75■□□□□ 0.11
LINC00239-201ENST00000556973 NUTM2DQ5VT03 806 aaPredicted RBP15.75■□□□□ 0.11
LINC00239-201ENST00000556973 FBXO41Q8TF61 875 aa15.75■□□□□ 0.11
LINC00239-201ENST00000556973 SLC26A8Q96RN1 970 aa15.75■□□□□ 0.11
LINC00239-201ENST00000556973 IQSEC2Q5JU85 1478 aa15.75■□□□□ 0.11
LINC00239-201ENST00000556973 RPGRIP1LQ68CZ1 1315 aa15.73■□□□□ 0.11
LINC00239-201ENST00000556973 STRCP1A6NGW2 1772 aa15.73■□□□□ 0.11
LINC00239-201ENST00000556973 TBX22Q9Y458 520 aa15.73■□□□□ 0.11
LINC00239-201ENST00000556973 VGFO15240 615 aaPredicted RBP15.72■□□□□ 0.11
LINC00239-201ENST00000556973 ILDR1Q86SU0 546 aaPredicted RBP15.72■□□□□ 0.11
LINC00239-201ENST00000556973 NEXMIFQ5QGS0 1516 aa15.72■□□□□ 0.11
LINC00239-201ENST00000556973 KCNA6P17658 529 aa15.71■□□□□ 0.11
LINC00239-201ENST00000556973 SENP3Q9H4L4 574 aaPredicted RBP15.7■□□□□ 0.1
LINC00239-201ENST00000556973 PPLO60437 1756 aa15.7■□□□□ 0.1
LINC00239-201ENST00000556973 CHD2O14647 1828 aaKnown RBP15.69■□□□□ 0.1
LINC00239-201ENST00000556973 ANKRD30BQ9BXX2 1392 aa15.69■□□□□ 0.1
LINC00239-201ENST00000556973 DIP2AQ14689 1571 aa15.69■□□□□ 0.1
LINC00239-201ENST00000556973 RGL3Q3MIN7 710 aa15.68■□□□□ 0.1
LINC00239-201ENST00000556973 SPATA31E1Q6ZUB1 1445 aa15.68■□□□□ 0.1
LINC00239-201ENST00000556973 ADAMTS13Q76LX8 1427 aa15.68■□□□□ 0.1
LINC00239-201ENST00000556973 SETBP1Q9Y6X0 1596 aa15.67■□□□□ 0.1
LINC00239-201ENST00000556973 PIK3R4Q99570 1358 aa15.67■□□□□ 0.1
LINC00239-201ENST00000556973 LRRC7Q96NW7 1537 aa15.67■□□□□ 0.1
LINC00239-201ENST00000556973 NRXN3Q9Y4C0 1643 aa15.65■□□□□ 0.1
LINC00239-201ENST00000556973 IFT172Q9UG01 1749 aa15.65■□□□□ 0.1
LINC00239-201ENST00000556973 NWD1Q149M9 1564 aa15.64■□□□□ 0.09
LINC00239-201ENST00000556973 PROSER2Q86WR7 435 aaPredicted RBP15.63■□□□□ 0.09
LINC00239-201ENST00000556973 XIRP1Q702N8 1843 aaKnown RBP15.63■□□□□ 0.09
LINC00239-201ENST00000556973 TOM1O60784 492 aa15.62■□□□□ 0.09
LINC00239-201ENST00000556973 NKTRP30414 1462 aaKnown RBP15.61■□□□□ 0.09
LINC00239-201ENST00000556973 UBAP1LF5GYI3 381 aa15.61■□□□□ 0.09
LINC00239-201ENST00000556973 AMOTL2Q9Y2J4 779 aa15.61■□□□□ 0.09
LINC00239-201ENST00000556973 ADGRF5Q8IZF2 1346 aa15.6■□□□□ 0.09
LINC00239-201ENST00000556973 ALKQ9UM73 1620 aa15.6■□□□□ 0.09
LINC00239-201ENST00000556973 METP08581 1390 aa15.59■□□□□ 0.09
LINC00239-201ENST00000556973 SETD1AO15047 1707 aaKnown RBP15.58■□□□□ 0.08
LINC00239-201ENST00000556973 STAC3Q96MF2 364 aa15.58■□□□□ 0.08
LINC00239-201ENST00000556973 TMEM94Q12767 1356 aa15.58■□□□□ 0.08
LINC00239-201ENST00000556973 PTPRUQ92729 1446 aa15.58■□□□□ 0.08
LINC00239-201ENST00000556973 NCOA3Q9Y6Q9 1424 aa15.57■□□□□ 0.08
LINC00239-201ENST00000556973 RBM33Q96EV2 1170 aaKnown RBP15.56■□□□□ 0.08
LINC00239-201ENST00000556973 XRN1Q8IZH2 1706 aaKnown RBP15.55■□□□□ 0.08
LINC00239-201ENST00000556973 MYOM2P54296 1465 aa15.55■□□□□ 0.08
LINC00239-201ENST00000556973 DCAF11Q8TEB1 546 aa15.55■□□□□ 0.08
LINC00239-201ENST00000556973 PIK3C2GO75747 1445 aa15.54■□□□□ 0.08
LINC00239-201ENST00000556973 DHX57Q6P158 1386 aaKnown RBP15.53■□□□□ 0.08
LINC00239-201ENST00000556973 C14orf93Q9H972 538 aaKnown RBP15.53■□□□□ 0.08
LINC00239-201ENST00000556973 KDM2AQ9Y2K7 1162 aa15.53■□□□□ 0.08
LINC00239-201ENST00000556973 NRXN1Q9ULB1 1477 aa15.52■□□□□ 0.08
LINC00239-201ENST00000556973 MSH6P52701 1360 aa15.52■□□□□ 0.08
LINC00239-201ENST00000556973 PIP4K2BP78356 416 aa15.52■□□□□ 0.08
LINC00239-201ENST00000556973 LAMC1P11047 1609 aa15.51■□□□□ 0.07
LINC00239-201ENST00000556973 C14orf37Q86TY3 774 aa15.51■□□□□ 0.07
LINC00239-201ENST00000556973 C19orf44Q9H6X5 657 aa15.51■□□□□ 0.07
LINC00239-201ENST00000556973 SCAF1Q9H7N4 1312 aaKnown RBP15.5■□□□□ 0.07
LINC00239-201ENST00000556973 CFAP70Q5T0N1 1121 aa15.49■□□□□ 0.07
LINC00239-201ENST00000556973 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.48■□□□□ 0.07
LINC00239-201ENST00000556973 TMEM132EQ6IEE7 984 aa15.48■□□□□ 0.07
LINC00239-201ENST00000556973 SIN3AQ96ST3 1273 aa15.48■□□□□ 0.07
LINC00239-201ENST00000556973 PCGF6Q9BYE7 350 aa15.48■□□□□ 0.07
LINC00239-201ENST00000556973 PRAG1Q86YV5 1406 aa15.48■□□□□ 0.07
LINC00239-201ENST00000556973 NEUROD1Q13562 356 aa15.47■□□□□ 0.07
LINC00239-201ENST00000556973 PTCH1Q13635 1447 aa15.47■□□□□ 0.07
LINC00239-201ENST00000556973 CADPS2Q86UW7 1296 aa15.47■□□□□ 0.07
LINC00239-201ENST00000556973 SLAIN2Q9P270 581 aa15.47■□□□□ 0.07
LINC00239-201ENST00000556973 ATF3P18847 181 aa15.46■□□□□ 0.07
LINC00239-201ENST00000556973 STK26Q9P289 416 aa15.46■□□□□ 0.07
LINC00239-201ENST00000556973 LRPPRCP42704 1394 aaKnown RBP15.46■□□□□ 0.07
LINC00239-201ENST00000556973 ABCC11Q96J66 1382 aa15.46■□□□□ 0.07
LINC00239-201ENST00000556973 ROBO2Q9HCK4 1378 aa15.46■□□□□ 0.07
LINC00239-201ENST00000556973 SIRT1Q96EB6 747 aa15.45■□□□□ 0.06
LINC00239-201ENST00000556973 KNDC1Q76NI1 1749 aa15.45■□□□□ 0.06
LINC00239-201ENST00000556973 FAM135BQ49AJ0 1406 aa15.44■□□□□ 0.06
LINC00239-201ENST00000556973 YTHDC2Q9H6S0 1430 aaKnown RBP15.44■□□□□ 0.06
LINC00239-201ENST00000556973 ASXL1Q8IXJ9 1541 aa15.44■□□□□ 0.06
LINC00239-201ENST00000556973 TECPR2O15040 1411 aa15.43■□□□□ 0.06
LINC00239-201ENST00000556973 DCCP43146 1447 aa15.43■□□□□ 0.06
LINC00239-201ENST00000556973 L3MBTL2Q969R5 705 aa15.43■□□□□ 0.06
LINC00239-201ENST00000556973 NALCNQ8IZF0 1738 aa15.43■□□□□ 0.06
LINC00239-201ENST00000556973 KIAA1210Q9ULL0 1709 aa15.42■□□□□ 0.06
LINC00239-201ENST00000556973 ADGRL3Q9HAR2 1447 aa15.42■□□□□ 0.06
LINC00239-201ENST00000556973 ROBO1Q9Y6N7 1651 aa15.41■□□□□ 0.06
LINC00239-201ENST00000556973 HSPA1LP34931 641 aa15.41■□□□□ 0.06
LINC00239-201ENST00000556973 WAPLQ7Z5K2 1190 aa15.4■□□□□ 0.06
LINC00239-201ENST00000556973 ADGRB1O14514 1584 aa15.4■□□□□ 0.06
LINC00239-201ENST00000556973 DLC1Q96QB1 1528 aa15.38■□□□□ 0.05
LINC00239-201ENST00000556973 TRAK1Q9UPV9 953 aa15.37■□□□□ 0.05
LINC00239-201ENST00000556973 MST1RQ04912 1400 aa15.36■□□□□ 0.05
LINC00239-201ENST00000556973 POGKQ9P215 609 aa15.36■□□□□ 0.05
LINC00239-201ENST00000556973 PLEKHH1Q9ULM0 1364 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms