RNA–Protein interactions for RNA: ENST00000556310.1

SLIRP-205, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-205ENST00000556310 IDI1Q13907 227 aa17.38■□□□□ 0.37
SLIRP-205ENST00000556310 TMEM131LA2VDJ0 1609 aa17.37■□□□□ 0.37
SLIRP-205ENST00000556310 TMEM2Q9UHN6 1383 aa17.36■□□□□ 0.37
SLIRP-205ENST00000556310 CERKQ8TCT0 537 aa17.35■□□□□ 0.37
SLIRP-205ENST00000556310 STAG3Q9UJ98 1225 aa17.35■□□□□ 0.37
SLIRP-205ENST00000556310 IQSEC2Q5JU85 1478 aa17.33■□□□□ 0.37
SLIRP-205ENST00000556310 ZNF335Q9H4Z2 1342 aaPredicted RBP17.33■□□□□ 0.36
SLIRP-205ENST00000556310 TRPM2O94759 1503 aa17.32■□□□□ 0.36
SLIRP-205ENST00000556310 ILDR1Q86SU0 546 aaPredicted RBP17.32■□□□□ 0.36
SLIRP-205ENST00000556310 FBXO41Q8TF61 875 aa17.32■□□□□ 0.36
SLIRP-205ENST00000556310 MYCNP04198 464 aaPredicted RBP17.3■□□□□ 0.36
SLIRP-205ENST00000556310 LTKP29376 864 aa17.3■□□□□ 0.36
SLIRP-205ENST00000556310 EID1Q9Y6B2 187 aa17.3■□□□□ 0.36
SLIRP-205ENST00000556310 CPS1P31327 1500 aa17.3■□□□□ 0.36
SLIRP-205ENST00000556310 ZFYVE9O95405 1425 aa17.3■□□□□ 0.36
SLIRP-205ENST00000556310 CLTCL1P53675 1640 aa17.29■□□□□ 0.36
SLIRP-205ENST00000556310 TXNDC2Q86VQ3 553 aa17.29■□□□□ 0.36
SLIRP-205ENST00000556310 TRIM52Q96A61 297 aa17.28■□□□□ 0.36
SLIRP-205ENST00000556310 SETD5Q9C0A6 1442 aa17.27■□□□□ 0.35
SLIRP-205ENST00000556310 STRCP1A6NGW2 1772 aa17.27■□□□□ 0.35
SLIRP-205ENST00000556310 KIF1BO60333 1816 aa17.26■□□□□ 0.35
SLIRP-205ENST00000556310 RIMS2Q9UQ26 1411 aa17.26■□□□□ 0.35
SLIRP-205ENST00000556310 ACIN1Q9UKV3 1341 aaKnown RBP17.24■□□□□ 0.35
SLIRP-205ENST00000556310 CHGAP10645 457 aaKnown RBP17.22■□□□□ 0.35
SLIRP-205ENST00000556310 PLEKHG1Q9ULL1 1385 aa17.22■□□□□ 0.35
SLIRP-205ENST00000556310 RAB3GAP2Q9H2M9 1393 aa17.21■□□□□ 0.35
SLIRP-205ENST00000556310 HDGFP51858 240 aaKnown RBP17.2■□□□□ 0.34
SLIRP-205ENST00000556310 DIP2AQ14689 1571 aa17.19■□□□□ 0.34
SLIRP-205ENST00000556310 NWD1Q149M9 1564 aa17.19■□□□□ 0.34
SLIRP-205ENST00000556310 PPP1R15AO75807 674 aaPredicted RBP17.19■□□□□ 0.34
SLIRP-205ENST00000556310 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.19■□□□□ 0.34
SLIRP-205ENST00000556310 NEXMIFQ5QGS0 1516 aa17.18■□□□□ 0.34
SLIRP-205ENST00000556310 LRRC7Q96NW7 1537 aa17.17■□□□□ 0.34
SLIRP-205ENST00000556310 MPHOSPH9Q99550 1183 aa17.16■□□□□ 0.34
SLIRP-205ENST00000556310 U3KPZ7 1027 aaPredicted RBP17.16■□□□□ 0.34
SLIRP-205ENST00000556310 CHD2O14647 1828 aaKnown RBP17.16■□□□□ 0.34
SLIRP-205ENST00000556310 XIRP1Q702N8 1843 aaKnown RBP17.16■□□□□ 0.34
SLIRP-205ENST00000556310 SETBP1Q9Y6X0 1596 aa17.15■□□□□ 0.34
SLIRP-205ENST00000556310 NRXN3Q9Y4C0 1643 aa17.15■□□□□ 0.34
SLIRP-205ENST00000556310 NKTRP30414 1462 aaKnown RBP17.15■□□□□ 0.34
SLIRP-205ENST00000556310 ADAMTS13Q76LX8 1427 aa17.14■□□□□ 0.33
SLIRP-205ENST00000556310 SLC26A8Q96RN1 970 aa17.14■□□□□ 0.33
SLIRP-205ENST00000556310 CCDC144AA2RUR9 1427 aa17.13■□□□□ 0.33
SLIRP-205ENST00000556310 PPLO60437 1756 aa17.13■□□□□ 0.33
SLIRP-205ENST00000556310 ZNF326Q5BKZ1 582 aaKnown RBP17.12■□□□□ 0.33
SLIRP-205ENST00000556310 BCANQ96GW7 911 aa17.12■□□□□ 0.33
SLIRP-205ENST00000556310 NUTM2DQ5VT03 806 aaPredicted RBP17.11■□□□□ 0.33
SLIRP-205ENST00000556310 IFT172Q9UG01 1749 aa17.1■□□□□ 0.33
SLIRP-205ENST00000556310 KCNA6P17658 529 aa17.1■□□□□ 0.33
SLIRP-205ENST00000556310 UBAP1LF5GYI3 381 aa17.09■□□□□ 0.33
SLIRP-205ENST00000556310 HRCP23327 699 aa17.09■□□□□ 0.33
SLIRP-205ENST00000556310 TBX22Q9Y458 520 aa17.09■□□□□ 0.33
SLIRP-205ENST00000556310 PIK3R4Q99570 1358 aa17.09■□□□□ 0.33
SLIRP-205ENST00000556310 ALKQ9UM73 1620 aa17.09■□□□□ 0.33
SLIRP-205ENST00000556310 SPATA31E1Q6ZUB1 1445 aa17.08■□□□□ 0.32
SLIRP-205ENST00000556310 SETD1AO15047 1707 aaKnown RBP17.07■□□□□ 0.32
SLIRP-205ENST00000556310 XRN1Q8IZH2 1706 aaKnown RBP17.07■□□□□ 0.32
SLIRP-205ENST00000556310 RPGRIP1LQ68CZ1 1315 aa17.06■□□□□ 0.32
SLIRP-205ENST00000556310 TMEM94Q12767 1356 aa17.05■□□□□ 0.32
SLIRP-205ENST00000556310 TOM1O60784 492 aa17.04■□□□□ 0.32
SLIRP-205ENST00000556310 VGFO15240 615 aaPredicted RBP17.02■□□□□ 0.32
SLIRP-205ENST00000556310 PTPRUQ92729 1446 aa17.02■□□□□ 0.31
SLIRP-205ENST00000556310 PROSER2Q86WR7 435 aaPredicted RBP17.01■□□□□ 0.31
SLIRP-205ENST00000556310 ANKRD30BQ9BXX2 1392 aa17.01■□□□□ 0.31
SLIRP-205ENST00000556310 NCOA3Q9Y6Q9 1424 aa16.99■□□□□ 0.31
SLIRP-205ENST00000556310 METP08581 1390 aa16.99■□□□□ 0.31
SLIRP-205ENST00000556310 ATXN8OSP0DMR3 200 aa16.98■□□□□ 0.31
SLIRP-205ENST00000556310 SAMD1Q6SPF0 538 aaPredicted RBP16.98■□□□□ 0.31
SLIRP-205ENST00000556310 PIP4K2BP78356 416 aa16.97■□□□□ 0.31
SLIRP-205ENST00000556310 MSH6P52701 1360 aa16.97■□□□□ 0.31
SLIRP-205ENST00000556310 MYOM2P54296 1465 aa16.97■□□□□ 0.31
SLIRP-205ENST00000556310 PRAG1Q86YV5 1406 aa16.96■□□□□ 0.31
SLIRP-205ENST00000556310 RGL3Q3MIN7 710 aa16.96■□□□□ 0.31
SLIRP-205ENST00000556310 AMOTL2Q9Y2J4 779 aa16.96■□□□□ 0.31
SLIRP-205ENST00000556310 PIK3C2GO75747 1445 aa16.96■□□□□ 0.3
SLIRP-205ENST00000556310 RBM33Q96EV2 1170 aaKnown RBP16.95■□□□□ 0.3
SLIRP-205ENST00000556310 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.95■□□□□ 0.3
SLIRP-205ENST00000556310 LAMC1P11047 1609 aa16.95■□□□□ 0.3
SLIRP-205ENST00000556310 PTCH1Q13635 1447 aa16.94■□□□□ 0.3
SLIRP-205ENST00000556310 ADGRF5Q8IZF2 1346 aa16.94■□□□□ 0.3
SLIRP-205ENST00000556310 NRXN1Q9ULB1 1477 aa16.93■□□□□ 0.3
SLIRP-205ENST00000556310 NALCNQ8IZF0 1738 aa16.93■□□□□ 0.3
SLIRP-205ENST00000556310 ASXL1Q8IXJ9 1541 aa16.92■□□□□ 0.3
SLIRP-205ENST00000556310 ROBO1Q9Y6N7 1651 aa16.92■□□□□ 0.3
SLIRP-205ENST00000556310 KNDC1Q76NI1 1749 aa16.92■□□□□ 0.3
SLIRP-205ENST00000556310 DCCP43146 1447 aa16.91■□□□□ 0.3
SLIRP-205ENST00000556310 FAM135BQ49AJ0 1406 aa16.9■□□□□ 0.3
SLIRP-205ENST00000556310 RNF39Q9H2S5 420 aa16.9■□□□□ 0.3
SLIRP-205ENST00000556310 C14orf37Q86TY3 774 aa16.89■□□□□ 0.29
SLIRP-205ENST00000556310 ADGRL3Q9HAR2 1447 aa16.88■□□□□ 0.29
SLIRP-205ENST00000556310 HSPA1LP34931 641 aa16.88■□□□□ 0.29
SLIRP-205ENST00000556310 C19orf44Q9H6X5 657 aa16.87■□□□□ 0.29
SLIRP-205ENST00000556310 TECPR2O15040 1411 aa16.87■□□□□ 0.29
SLIRP-205ENST00000556310 ROBO2Q9HCK4 1378 aa16.86■□□□□ 0.29
SLIRP-205ENST00000556310 TRIM26Q12899 539 aaPredicted RBP16.85■□□□□ 0.29
SLIRP-205ENST00000556310 CADPS2Q86UW7 1296 aa16.85■□□□□ 0.29
SLIRP-205ENST00000556310 SLAIN2Q9P270 581 aa16.84■□□□□ 0.29
SLIRP-205ENST00000556310 LRPPRCP42704 1394 aaKnown RBP16.84■□□□□ 0.29
SLIRP-205ENST00000556310 ATF3P18847 181 aa16.83■□□□□ 0.28
SLIRP-205ENST00000556310 PHLPP1O60346 1717 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms