RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 SLC4A1APQ9BWU0 796 aaKnown RBP30.82■■■□□ 2.52
CCDC88C-210ENST00000555995 SETD5Q9C0A6 1442 aa30.81■■■□□ 2.52
CCDC88C-210ENST00000555995 KIF1BO60333 1816 aa30.79■■■□□ 2.52
CCDC88C-210ENST00000555995 CLTCL1P53675 1640 aa30.78■■■□□ 2.52
CCDC88C-210ENST00000555995 PPP1R15AO75807 674 aaPredicted RBP30.78■■■□□ 2.52
CCDC88C-210ENST00000555995 PLEKHG1Q9ULL1 1385 aa30.77■■■□□ 2.52
CCDC88C-210ENST00000555995 STRCP1A6NGW2 1772 aa30.74■■■□□ 2.51
CCDC88C-210ENST00000555995 DIP2AQ14689 1571 aa30.71■■■□□ 2.51
CCDC88C-210ENST00000555995 BCANQ96GW7 911 aa30.7■■■□□ 2.51
CCDC88C-210ENST00000555995 RAB3GAP2Q9H2M9 1393 aa30.66■■■□□ 2.5
CCDC88C-210ENST00000555995 LRRC7Q96NW7 1537 aa30.66■■■□□ 2.5
CCDC88C-210ENST00000555995 NWD1Q149M9 1564 aa30.66■■■□□ 2.5
CCDC88C-210ENST00000555995 MPHOSPH9Q99550 1183 aa30.65■■■□□ 2.5
CCDC88C-210ENST00000555995 ZNF326Q5BKZ1 582 aaKnown RBP30.64■■■□□ 2.5
CCDC88C-210ENST00000555995 NKTRP30414 1462 aaKnown RBP30.63■■■□□ 2.49
CCDC88C-210ENST00000555995 SLC26A8Q96RN1 970 aa30.63■■■□□ 2.49
CCDC88C-210ENST00000555995 UBAP1LF5GYI3 381 aa30.61■■■□□ 2.49
CCDC88C-210ENST00000555995 KCNA6P17658 529 aa30.61■■■□□ 2.49
CCDC88C-210ENST00000555995 CCDC144AA2RUR9 1427 aa30.61■■■□□ 2.49
CCDC88C-210ENST00000555995 NEXMIFQ5QGS0 1516 aa30.61■■■□□ 2.49
CCDC88C-210ENST00000555995 CHD2O14647 1828 aaKnown RBP30.59■■■□□ 2.49
CCDC88C-210ENST00000555995 SETBP1Q9Y6X0 1596 aa30.59■■■□□ 2.49
CCDC88C-210ENST00000555995 TBX22Q9Y458 520 aa30.59■■■□□ 2.49
CCDC88C-210ENST00000555995 PIK3R4Q99570 1358 aa30.58■■■□□ 2.49
CCDC88C-210ENST00000555995 TOM1O60784 492 aa30.58■■■□□ 2.49
CCDC88C-210ENST00000555995 HRCP23327 699 aa30.57■■■□□ 2.48
CCDC88C-210ENST00000555995 ADAMTS13Q76LX8 1427 aa30.56■■■□□ 2.48
CCDC88C-210ENST00000555995 RPGRIP1LQ68CZ1 1315 aa30.55■■■□□ 2.48
CCDC88C-210ENST00000555995 NUTM2DQ5VT03 806 aaPredicted RBP30.54■■■□□ 2.48
CCDC88C-210ENST00000555995 XIRP1Q702N8 1843 aaKnown RBP30.54■■■□□ 2.48
CCDC88C-210ENST00000555995 NRXN3Q9Y4C0 1643 aa30.52■■■□□ 2.48
CCDC88C-210ENST00000555995 FOXD1Q16676 465 aa30.52■■■□□ 2.48
CCDC88C-210ENST00000555995 PPLO60437 1756 aa30.51■■■□□ 2.48
CCDC88C-210ENST00000555995 VGFO15240 615 aaPredicted RBP30.48■■■□□ 2.47
CCDC88C-210ENST00000555995 TMEM94Q12767 1356 aa30.47■■■□□ 2.47
CCDC88C-210ENST00000555995 PROSER2Q86WR7 435 aaPredicted RBP30.46■■■□□ 2.47
CCDC88C-210ENST00000555995 SENP3Q9H4L4 574 aaPredicted RBP30.45■■■□□ 2.47
CCDC88C-210ENST00000555995 SPATA31E1Q6ZUB1 1445 aa30.43■■■□□ 2.46
CCDC88C-210ENST00000555995 NCOA3Q9Y6Q9 1424 aa30.43■■■□□ 2.46
CCDC88C-210ENST00000555995 IFT172Q9UG01 1749 aa30.42■■■□□ 2.46
CCDC88C-210ENST00000555995 ALKQ9UM73 1620 aa30.41■■■□□ 2.46
CCDC88C-210ENST00000555995 SCAF1Q9H7N4 1312 aaKnown RBP30.41■■■□□ 2.46
CCDC88C-210ENST00000555995 XRN1Q8IZH2 1706 aaKnown RBP30.4■■■□□ 2.46
CCDC88C-210ENST00000555995 ANKRD30BQ9BXX2 1392 aa30.4■■■□□ 2.46
CCDC88C-210ENST00000555995 PIP4K2BP78356 416 aa30.38■■■□□ 2.45
CCDC88C-210ENST00000555995 MSH6P52701 1360 aa30.38■■■□□ 2.45
CCDC88C-210ENST00000555995 SETD1AO15047 1707 aaKnown RBP30.35■■■□□ 2.45
CCDC88C-210ENST00000555995 AMOTL2Q9Y2J4 779 aa30.33■■■□□ 2.45
CCDC88C-210ENST00000555995 PTPRUQ92729 1446 aa30.32■■■□□ 2.44
CCDC88C-210ENST00000555995 METP08581 1390 aa30.3■■■□□ 2.44
CCDC88C-210ENST00000555995 RGL3Q3MIN7 710 aa30.3■■■□□ 2.44
CCDC88C-210ENST00000555995 C14orf37Q86TY3 774 aa30.27■■■□□ 2.44
CCDC88C-210ENST00000555995 MYOM2P54296 1465 aa30.26■■■□□ 2.44
CCDC88C-210ENST00000555995 PRAG1Q86YV5 1406 aa30.26■■■□□ 2.43
CCDC88C-210ENST00000555995 PTCH1Q13635 1447 aa30.24■■■□□ 2.43
CCDC88C-210ENST00000555995 FAM135BQ49AJ0 1406 aa30.24■■■□□ 2.43
CCDC88C-210ENST00000555995 RBM33Q96EV2 1170 aaKnown RBP30.24■■■□□ 2.43
CCDC88C-210ENST00000555995 LAMC1P11047 1609 aa30.24■■■□□ 2.43
CCDC88C-210ENST00000555995 SIPA1L2Q9P2F8 1722 aaPredicted RBP30.24■■■□□ 2.43
CCDC88C-210ENST00000555995 DCCP43146 1447 aa30.23■■■□□ 2.43
CCDC88C-210ENST00000555995 PIK3C2GO75747 1445 aa30.22■■■□□ 2.43
CCDC88C-210ENST00000555995 C19orf44Q9H6X5 657 aa30.22■■■□□ 2.43
CCDC88C-210ENST00000555995 ADGRF5Q8IZF2 1346 aa30.21■■■□□ 2.43
CCDC88C-210ENST00000555995 HSPA1LP34931 641 aa30.2■■■□□ 2.43
CCDC88C-210ENST00000555995 CADPS2Q86UW7 1296 aa30.2■■■□□ 2.43
CCDC88C-210ENST00000555995 ROBO1Q9Y6N7 1651 aa30.2■■■□□ 2.42
CCDC88C-210ENST00000555995 NRXN1Q9ULB1 1477 aa30.19■■■□□ 2.42
CCDC88C-210ENST00000555995 ATF3P18847 181 aa30.17■■■□□ 2.42
CCDC88C-210ENST00000555995 STAC3Q96MF2 364 aa30.16■■■□□ 2.42
CCDC88C-210ENST00000555995 ADGRL3Q9HAR2 1447 aa30.15■■■□□ 2.42
CCDC88C-210ENST00000555995 KNDC1Q76NI1 1749 aa30.14■■■□□ 2.42
CCDC88C-210ENST00000555995 SLAIN2Q9P270 581 aa30.14■■■□□ 2.42
CCDC88C-210ENST00000555995 NALCNQ8IZF0 1738 aa30.13■■■□□ 2.41
CCDC88C-210ENST00000555995 TECPR2O15040 1411 aa30.1■■■□□ 2.41
CCDC88C-210ENST00000555995 LRPPRCP42704 1394 aaKnown RBP30.08■■■□□ 2.41
CCDC88C-210ENST00000555995 TRIM26Q12899 539 aaPredicted RBP30.08■■■□□ 2.41
CCDC88C-210ENST00000555995 ASXL1Q8IXJ9 1541 aa30.07■■■□□ 2.4
CCDC88C-210ENST00000555995 ROBO2Q9HCK4 1378 aa30.07■■■□□ 2.4
CCDC88C-210ENST00000555995 C14orf93Q9H972 538 aaKnown RBP30.05■■■□□ 2.4
CCDC88C-210ENST00000555995 ABCC11Q96J66 1382 aa30.04■■■□□ 2.4
CCDC88C-210ENST00000555995 PHLPP1O60346 1717 aa30.04■■■□□ 2.4
CCDC88C-210ENST00000555995 YTHDC2Q9H6S0 1430 aaKnown RBP30.03■■■□□ 2.4
CCDC88C-210ENST00000555995 DHX57Q6P158 1386 aaKnown RBP30.02■■■□□ 2.4
CCDC88C-210ENST00000555995 DCAF11Q8TEB1 546 aa30.01■■■□□ 2.39
CCDC88C-210ENST00000555995 MST1RQ04912 1400 aa30.01■■■□□ 2.39
CCDC88C-210ENST00000555995 CDC42BPGQ6DT37 1551 aa30■■■□□ 2.39
CCDC88C-210ENST00000555995 AHDC1Q5TGY3 1603 aaPredicted RBP30■■■□□ 2.39
CCDC88C-210ENST00000555995 DISP3Q9P2K9 1392 aa29.99■■■□□ 2.39
CCDC88C-210ENST00000555995 MED1Q15648 1581 aaPredicted RBP29.98■■■□□ 2.39
CCDC88C-210ENST00000555995 CFAP70Q5T0N1 1121 aa29.96■■■□□ 2.39
CCDC88C-210ENST00000555995 TMEM132EQ6IEE7 984 aa29.96■■■□□ 2.39
CCDC88C-210ENST00000555995 STK26Q9P289 416 aa29.96■■■□□ 2.39
CCDC88C-210ENST00000555995 SIRT1Q96EB6 747 aa29.95■■■□□ 2.39
CCDC88C-210ENST00000555995 KDM2AQ9Y2K7 1162 aa29.95■■■□□ 2.39
CCDC88C-210ENST00000555995 DLC1Q96QB1 1528 aa29.95■■■□□ 2.38
CCDC88C-210ENST00000555995 COL16A1Q07092 1604 aaPredicted RBP29.93■■■□□ 2.38
CCDC88C-210ENST00000555995 ADGRB1O14514 1584 aa29.93■■■□□ 2.38
CCDC88C-210ENST00000555995 KIAA1210Q9ULL0 1709 aa29.92■■■□□ 2.38
CCDC88C-210ENST00000555995 BRINP3Q76B58 766 aa29.91■■■□□ 2.38
CCDC88C-210ENST00000555995 NHSL1Q5SYE7 1610 aa29.91■■■□□ 2.38
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms