RNA–Protein interactions for RNA: ENST00000555854.1

VIPAS39-207, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 5

Gene VIPAS39, Length 444 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-207ENST00000555854 NAIPQ13075 1403 aa14.27□□□□□ -0.12
VIPAS39-207ENST00000555854 NUP155O75694 1391 aa14.27□□□□□ -0.12
VIPAS39-207ENST00000555854 SLC52A1Q9NWF4 448 aa14.27□□□□□ -0.13
VIPAS39-207ENST00000555854 STAG3Q9UJ98 1225 aa14.25□□□□□ -0.13
VIPAS39-207ENST00000555854 RIMS2Q9UQ26 1411 aa14.24□□□□□ -0.13
VIPAS39-207ENST00000555854 SPHKAPQ2M3C7 1700 aa14.24□□□□□ -0.13
VIPAS39-207ENST00000555854 EID1Q9Y6B2 187 aa14.24□□□□□ -0.13
VIPAS39-207ENST00000555854 HFM1A2PYH4 1435 aa14.23□□□□□ -0.13
VIPAS39-207ENST00000555854 PLEKHG1Q9ULL1 1385 aa14.22□□□□□ -0.13
VIPAS39-207ENST00000555854 PIP4K2BP78356 416 aa14.21□□□□□ -0.13
VIPAS39-207ENST00000555854 SLC26A8Q96RN1 970 aa14.21□□□□□ -0.13
VIPAS39-207ENST00000555854 CLTCL1P53675 1640 aa14.21□□□□□ -0.13
VIPAS39-207ENST00000555854 ADAMTS13Q76LX8 1427 aa14.21□□□□□ -0.13
VIPAS39-207ENST00000555854 NKTRP30414 1462 aaKnown RBP14.2□□□□□ -0.14
VIPAS39-207ENST00000555854 HSPA1LP34931 641 aa14.2□□□□□ -0.14
VIPAS39-207ENST00000555854 DISP3Q9P2K9 1392 aa14.2□□□□□ -0.14
VIPAS39-207ENST00000555854 TRPM2O94759 1503 aa14.2□□□□□ -0.14
VIPAS39-207ENST00000555854 NRXN3Q9Y4C0 1643 aa14.19□□□□□ -0.14
VIPAS39-207ENST00000555854 TOM1O60784 492 aa14.19□□□□□ -0.14
VIPAS39-207ENST00000555854 TMEM94Q12767 1356 aa14.19□□□□□ -0.14
VIPAS39-207ENST00000555854 CHD2O14647 1828 aaKnown RBP14.18□□□□□ -0.14
VIPAS39-207ENST00000555854 SCAF1Q9H7N4 1312 aaKnown RBP14.17□□□□□ -0.14
VIPAS39-207ENST00000555854 KCNA6P17658 529 aa14.17□□□□□ -0.14
VIPAS39-207ENST00000555854 ILDR2Q71H61 639 aa14.17□□□□□ -0.14
VIPAS39-207ENST00000555854 DIP2AQ14689 1571 aa14.17□□□□□ -0.14
VIPAS39-207ENST00000555854 MED1Q15648 1581 aaPredicted RBP14.17□□□□□ -0.14
VIPAS39-207ENST00000555854 NUTM2DQ5VT03 806 aaPredicted RBP14.15□□□□□ -0.14
VIPAS39-207ENST00000555854 RBM33Q96EV2 1170 aaKnown RBP14.15□□□□□ -0.14
VIPAS39-207ENST00000555854 NEXMIFQ5QGS0 1516 aa14.15□□□□□ -0.14
VIPAS39-207ENST00000555854 SETBP1Q9Y6X0 1596 aa14.14□□□□□ -0.15
VIPAS39-207ENST00000555854 CHGAP10645 457 aaKnown RBP14.14□□□□□ -0.15
VIPAS39-207ENST00000555854 PPP1R15AO75807 674 aaPredicted RBP14.13□□□□□ -0.15
VIPAS39-207ENST00000555854 PTPRUQ92729 1446 aa14.13□□□□□ -0.15
VIPAS39-207ENST00000555854 XRN1Q8IZH2 1706 aaKnown RBP14.12□□□□□ -0.15
VIPAS39-207ENST00000555854 ROBO1Q9Y6N7 1651 aa14.1□□□□□ -0.15
VIPAS39-207ENST00000555854 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.1□□□□□ -0.15
VIPAS39-207ENST00000555854 TBX22Q9Y458 520 aa14.1□□□□□ -0.15
VIPAS39-207ENST00000555854 FAM135BQ49AJ0 1406 aa14.09□□□□□ -0.15
VIPAS39-207ENST00000555854 SETD1AO15047 1707 aaKnown RBP14.09□□□□□ -0.15
VIPAS39-207ENST00000555854 PIK3R4Q99570 1358 aa14.09□□□□□ -0.15
VIPAS39-207ENST00000555854 PROSER2Q86WR7 435 aaPredicted RBP14.08□□□□□ -0.16
VIPAS39-207ENST00000555854 BCANQ96GW7 911 aa14.08□□□□□ -0.16
VIPAS39-207ENST00000555854 KIF1BO60333 1816 aa14.08□□□□□ -0.16
VIPAS39-207ENST00000555854 METP08581 1390 aa14.06□□□□□ -0.16
VIPAS39-207ENST00000555854 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.05□□□□□ -0.16
VIPAS39-207ENST00000555854 HDGFP51858 240 aaKnown RBP14.05□□□□□ -0.16
VIPAS39-207ENST00000555854 MSH6P52701 1360 aa14.05□□□□□ -0.16
VIPAS39-207ENST00000555854 NCOA3Q9Y6Q9 1424 aa14.05□□□□□ -0.16
VIPAS39-207ENST00000555854 PPLO60437 1756 aa14.04□□□□□ -0.16
VIPAS39-207ENST00000555854 TRIM52Q96A61 297 aa14.04□□□□□ -0.16
VIPAS39-207ENST00000555854 SLC4A1APQ9BWU0 796 aaKnown RBP14.03□□□□□ -0.16
VIPAS39-207ENST00000555854 COL16A1Q07092 1604 aaPredicted RBP14.02□□□□□ -0.16
VIPAS39-207ENST00000555854 ZNF326Q5BKZ1 582 aaKnown RBP14.02□□□□□ -0.17
VIPAS39-207ENST00000555854 SPATA31E1Q6ZUB1 1445 aa14.01□□□□□ -0.17
VIPAS39-207ENST00000555854 AMOTL2Q9Y2J4 779 aa14.01□□□□□ -0.17
VIPAS39-207ENST00000555854 NALCNQ8IZF0 1738 aa14.01□□□□□ -0.17
VIPAS39-207ENST00000555854 IFT172Q9UG01 1749 aa14.01□□□□□ -0.17
VIPAS39-207ENST00000555854 PHLPP1O60346 1717 aa14□□□□□ -0.17
VIPAS39-207ENST00000555854 PRAG1Q86YV5 1406 aa13.99□□□□□ -0.17
VIPAS39-207ENST00000555854 DCCP43146 1447 aa13.98□□□□□ -0.17
VIPAS39-207ENST00000555854 AHDC1Q5TGY3 1603 aaPredicted RBP13.98□□□□□ -0.17
VIPAS39-207ENST00000555854 SOCS7O14512 581 aa13.98□□□□□ -0.17
VIPAS39-207ENST00000555854 SLAIN2Q9P270 581 aa13.98□□□□□ -0.17
VIPAS39-207ENST00000555854 ASXL1Q8IXJ9 1541 aa13.98□□□□□ -0.17
VIPAS39-207ENST00000555854 PTCH1Q13635 1447 aa13.98□□□□□ -0.17
VIPAS39-207ENST00000555854 SETD5Q9C0A6 1442 aa13.98□□□□□ -0.17
VIPAS39-207ENST00000555854 CCDC144AA2RUR9 1427 aa13.97□□□□□ -0.17
VIPAS39-207ENST00000555854 MST1RQ04912 1400 aa13.97□□□□□ -0.17
VIPAS39-207ENST00000555854 ADGRL3Q9HAR2 1447 aa13.97□□□□□ -0.17
VIPAS39-207ENST00000555854 MPHOSPH9Q99550 1183 aa13.96□□□□□ -0.17
VIPAS39-207ENST00000555854 RAB3GAP2Q9H2M9 1393 aa13.96□□□□□ -0.18
VIPAS39-207ENST00000555854 C19orf44Q9H6X5 657 aa13.95□□□□□ -0.18
VIPAS39-207ENST00000555854 RGS17Q9UGC6 210 aaPredicted RBP13.95□□□□□ -0.18
VIPAS39-207ENST00000555854 ROBO2Q9HCK4 1378 aa13.95□□□□□ -0.18
VIPAS39-207ENST00000555854 LRP6O75581 1613 aa13.93□□□□□ -0.18
VIPAS39-207ENST00000555854 NHSL1Q5SYE7 1610 aa13.93□□□□□ -0.18
VIPAS39-207ENST00000555854 RPGRIP1LQ68CZ1 1315 aa13.93□□□□□ -0.18
VIPAS39-207ENST00000555854 ADGRF5Q8IZF2 1346 aa13.93□□□□□ -0.18
VIPAS39-207ENST00000555854 C14orf37Q86TY3 774 aa13.93□□□□□ -0.18
VIPAS39-207ENST00000555854 CADPS2Q86UW7 1296 aa13.93□□□□□ -0.18
VIPAS39-207ENST00000555854 BRINP3Q76B58 766 aa13.92□□□□□ -0.18
VIPAS39-207ENST00000555854 PIK3C2GO75747 1445 aa13.91□□□□□ -0.18
VIPAS39-207ENST00000555854 VGFO15240 615 aaPredicted RBP13.91□□□□□ -0.18
VIPAS39-207ENST00000555854 JCADQ9P266 1359 aa13.91□□□□□ -0.18
VIPAS39-207ENST00000555854 SHPRHQ149N8 1683 aa13.91□□□□□ -0.18
VIPAS39-207ENST00000555854 ATF3P18847 181 aa13.9□□□□□ -0.18
VIPAS39-207ENST00000555854 NRXN1Q9ULB1 1477 aa13.9□□□□□ -0.18
VIPAS39-207ENST00000555854 KNDC1Q76NI1 1749 aa13.9□□□□□ -0.18
VIPAS39-207ENST00000555854 TECPR2O15040 1411 aa13.9□□□□□ -0.19
VIPAS39-207ENST00000555854 C1orf167Q5SNV9 1468 aa13.88□□□□□ -0.19
VIPAS39-207ENST00000555854 ANKRD30BQ9BXX2 1392 aa13.88□□□□□ -0.19
VIPAS39-207ENST00000555854 PPP4R3CPQ6ZMV5 832 aa13.88□□□□□ -0.19
VIPAS39-207ENST00000555854 LAMC1P11047 1609 aa13.88□□□□□ -0.19
VIPAS39-207ENST00000555854 CDC42BPGQ6DT37 1551 aa13.88□□□□□ -0.19
VIPAS39-207ENST00000555854 MYOM2P54296 1465 aa13.87□□□□□ -0.19
VIPAS39-207ENST00000555854 RGL3Q3MIN7 710 aa13.86□□□□□ -0.19
VIPAS39-207ENST00000555854 LRPPRCP42704 1394 aaKnown RBP13.84□□□□□ -0.19
VIPAS39-207ENST00000555854 PLEKHH1Q9ULM0 1364 aa13.84□□□□□ -0.19
VIPAS39-207ENST00000555854 POTEAQ6S8J7 498 aa13.84□□□□□ -0.19
VIPAS39-207ENST00000555854 DDX17Q92841 729 aaKnown RBP13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms