RNA–Protein interactions for RNA: ENST00000554409.1

LINC00640-201, long intergenic non-protein coding RNA 640, humanhuman

TSL 3 BASIC

Gene LINC00640, Length 498 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00640-201ENST00000554409 ITGAEP38570 1179 aa11.46□□□□□ -0.57
LINC00640-201ENST00000554409 ANKLE2Q86XL3 938 aa11.45□□□□□ -0.58
LINC00640-201ENST00000554409 ADGRB3O60242 1522 aa11.45□□□□□ -0.58
LINC00640-201ENST00000554409 NAIPQ13075 1403 aa11.44□□□□□ -0.58
LINC00640-201ENST00000554409 HFM1A2PYH4 1435 aa11.43□□□□□ -0.58
LINC00640-201ENST00000554409 NPHP4O75161 1426 aaPredicted RBP11.43□□□□□ -0.58
LINC00640-201ENST00000554409 SCAF11Q99590 1463 aaKnown RBP11.43□□□□□ -0.58
LINC00640-201ENST00000554409 SPINK5Q9NQ38 1064 aaPredicted RBP11.42□□□□□ -0.58
LINC00640-201ENST00000554409 NUP155O75694 1391 aa11.41□□□□□ -0.58
LINC00640-201ENST00000554409 ZNF335Q9H4Z2 1342 aaPredicted RBP11.41□□□□□ -0.58
LINC00640-201ENST00000554409 SPHKAPQ2M3C7 1700 aa11.41□□□□□ -0.58
LINC00640-201ENST00000554409 IDI1Q13907 227 aa11.41□□□□□ -0.58
LINC00640-201ENST00000554409 SLC52A1Q9NWF4 448 aa11.41□□□□□ -0.58
LINC00640-201ENST00000554409 MYO5BQ9ULV0 1848 aa11.41□□□□□ -0.58
LINC00640-201ENST00000554409 TMEM2Q9UHN6 1383 aa11.41□□□□□ -0.58
LINC00640-201ENST00000554409 CPS1P31327 1500 aa11.4□□□□□ -0.58
LINC00640-201ENST00000554409 TMEM131LA2VDJ0 1609 aa11.4□□□□□ -0.58
LINC00640-201ENST00000554409 ZNF219Q9P2Y4 722 aaPredicted RBP11.39□□□□□ -0.59
LINC00640-201ENST00000554409 STRCP1A6NGW2 1772 aa11.38□□□□□ -0.59
LINC00640-201ENST00000554409 LTKP29376 864 aa11.37□□□□□ -0.59
LINC00640-201ENST00000554409 STAG3Q9UJ98 1225 aa11.37□□□□□ -0.59
LINC00640-201ENST00000554409 EID1Q9Y6B2 187 aa11.37□□□□□ -0.59
LINC00640-201ENST00000554409 ZFYVE9O95405 1425 aa11.36□□□□□ -0.59
LINC00640-201ENST00000554409 TXNDC2Q86VQ3 553 aa11.36□□□□□ -0.59
LINC00640-201ENST00000554409 TRPM2O94759 1503 aa11.35□□□□□ -0.59
LINC00640-201ENST00000554409 CLTCL1P53675 1640 aa11.34□□□□□ -0.59
LINC00640-201ENST00000554409 RIMS2Q9UQ26 1411 aa11.33□□□□□ -0.6
LINC00640-201ENST00000554409 KIF1BO60333 1816 aa11.32□□□□□ -0.6
LINC00640-201ENST00000554409 NWD1Q149M9 1564 aa11.32□□□□□ -0.6
LINC00640-201ENST00000554409 PLEKHG1Q9ULL1 1385 aa11.31□□□□□ -0.6
LINC00640-201ENST00000554409 LRRC7Q96NW7 1537 aa11.31□□□□□ -0.6
LINC00640-201ENST00000554409 XIRP1Q702N8 1843 aaKnown RBP11.31□□□□□ -0.6
LINC00640-201ENST00000554409 ATXN8OSP0DMR3 200 aa11.31□□□□□ -0.6
LINC00640-201ENST00000554409 DIP2AQ14689 1571 aa11.3□□□□□ -0.6
LINC00640-201ENST00000554409 HDGFP51858 240 aaKnown RBP11.3□□□□□ -0.6
LINC00640-201ENST00000554409 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.3□□□□□ -0.6
LINC00640-201ENST00000554409 ACIN1Q9UKV3 1341 aaKnown RBP11.3□□□□□ -0.6
LINC00640-201ENST00000554409 CHD2O14647 1828 aaKnown RBP11.29□□□□□ -0.6
LINC00640-201ENST00000554409 NKTRP30414 1462 aaKnown RBP11.28□□□□□ -0.6
LINC00640-201ENST00000554409 TRIM52Q96A61 297 aa11.28□□□□□ -0.6
LINC00640-201ENST00000554409 ALKQ9UM73 1620 aa11.27□□□□□ -0.6
LINC00640-201ENST00000554409 SETD5Q9C0A6 1442 aa11.27□□□□□ -0.6
LINC00640-201ENST00000554409 NEXMIFQ5QGS0 1516 aa11.27□□□□□ -0.61
LINC00640-201ENST00000554409 CHGAP10645 457 aaKnown RBP11.27□□□□□ -0.61
LINC00640-201ENST00000554409 SETBP1Q9Y6X0 1596 aa11.27□□□□□ -0.61
LINC00640-201ENST00000554409 NRXN3Q9Y4C0 1643 aa11.27□□□□□ -0.61
LINC00640-201ENST00000554409 PPP1R15AO75807 674 aaPredicted RBP11.26□□□□□ -0.61
LINC00640-201ENST00000554409 KCNA6P17658 529 aa11.26□□□□□ -0.61
LINC00640-201ENST00000554409 ADAMTS13Q76LX8 1427 aa11.26□□□□□ -0.61
LINC00640-201ENST00000554409 UBAP1LF5GYI3 381 aa11.25□□□□□ -0.61
LINC00640-201ENST00000554409 DSG3P32926 999 aa11.25□□□□□ -0.61
LINC00640-201ENST00000554409 SLC26A8Q96RN1 970 aa11.25□□□□□ -0.61
LINC00640-201ENST00000554409 PPLO60437 1756 aa11.24□□□□□ -0.61
LINC00640-201ENST00000554409 TOM1O60784 492 aa11.24□□□□□ -0.61
LINC00640-201ENST00000554409 TBX22Q9Y458 520 aa11.24□□□□□ -0.61
LINC00640-201ENST00000554409 PIK3R4Q99570 1358 aa11.24□□□□□ -0.61
LINC00640-201ENST00000554409 RAB3GAP2Q9H2M9 1393 aa11.23□□□□□ -0.61
LINC00640-201ENST00000554409 XRN1Q8IZH2 1706 aaKnown RBP11.22□□□□□ -0.61
LINC00640-201ENST00000554409 BCANQ96GW7 911 aa11.22□□□□□ -0.61
LINC00640-201ENST00000554409 MPHOSPH9Q99550 1183 aa11.22□□□□□ -0.61
LINC00640-201ENST00000554409 SETD1AO15047 1707 aaKnown RBP11.21□□□□□ -0.61
LINC00640-201ENST00000554409 IFT172Q9UG01 1749 aa11.21□□□□□ -0.61
LINC00640-201ENST00000554409 TMEM94Q12767 1356 aa11.21□□□□□ -0.61
LINC00640-201ENST00000554409 ZNF326Q5BKZ1 582 aaKnown RBP11.21□□□□□ -0.61
LINC00640-201ENST00000554409 CCDC144AA2RUR9 1427 aa11.2□□□□□ -0.62
LINC00640-201ENST00000554409 NCOA3Q9Y6Q9 1424 aa11.2□□□□□ -0.62
LINC00640-201ENST00000554409 RPGRIP1LQ68CZ1 1315 aa11.2□□□□□ -0.62
LINC00640-201ENST00000554409 ABCB7O75027 752 aa11.2□□□□□ -0.62
LINC00640-201ENST00000554409 NUTM2DQ5VT03 806 aaPredicted RBP11.2□□□□□ -0.62
LINC00640-201ENST00000554409 ATF5Q9Y2D1 282 aaPredicted RBP11.2□□□□□ -0.62
LINC00640-201ENST00000554409 SPATA31E1Q6ZUB1 1445 aa11.18□□□□□ -0.62
LINC00640-201ENST00000554409 PTPRUQ92729 1446 aa11.18□□□□□ -0.62
LINC00640-201ENST00000554409 HRCP23327 699 aa11.18□□□□□ -0.62
LINC00640-201ENST00000554409 PROSER2Q86WR7 435 aaPredicted RBP11.18□□□□□ -0.62
LINC00640-201ENST00000554409 VGFO15240 615 aaPredicted RBP11.17□□□□□ -0.62
LINC00640-201ENST00000554409 PIP4K2BP78356 416 aa11.17□□□□□ -0.62
LINC00640-201ENST00000554409 MSH6P52701 1360 aa11.16□□□□□ -0.62
LINC00640-201ENST00000554409 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.15□□□□□ -0.62
LINC00640-201ENST00000554409 FAM135BQ49AJ0 1406 aa11.15□□□□□ -0.62
LINC00640-201ENST00000554409 PRAG1Q86YV5 1406 aa11.15□□□□□ -0.62
LINC00640-201ENST00000554409 METP08581 1390 aa11.15□□□□□ -0.63
LINC00640-201ENST00000554409 ROBO1Q9Y6N7 1651 aa11.14□□□□□ -0.63
LINC00640-201ENST00000554409 POLA2Q14181 598 aa11.14□□□□□ -0.63
LINC00640-201ENST00000554409 AMOTL2Q9Y2J4 779 aa11.14□□□□□ -0.63
LINC00640-201ENST00000554409 ANKRD30BQ9BXX2 1392 aa11.14□□□□□ -0.63
LINC00640-201ENST00000554409 DCCP43146 1447 aa11.13□□□□□ -0.63
LINC00640-201ENST00000554409 HSPA1LP34931 641 aa11.13□□□□□ -0.63
LINC00640-201ENST00000554409 NALCNQ8IZF0 1738 aa11.12□□□□□ -0.63
LINC00640-201ENST00000554409 PTCH1Q13635 1447 aa11.12□□□□□ -0.63
LINC00640-201ENST00000554409 RBM33Q96EV2 1170 aaKnown RBP11.12□□□□□ -0.63
LINC00640-201ENST00000554409 MYOM2P54296 1465 aa11.12□□□□□ -0.63
LINC00640-201ENST00000554409 PIK3C2GO75747 1445 aa11.11□□□□□ -0.63
LINC00640-201ENST00000554409 LAMC1P11047 1609 aa11.11□□□□□ -0.63
LINC00640-201ENST00000554409 NRXN1Q9ULB1 1477 aa11.11□□□□□ -0.63
LINC00640-201ENST00000554409 KNDC1Q76NI1 1749 aa11.1□□□□□ -0.63
LINC00640-201ENST00000554409 ADGRL3Q9HAR2 1447 aa11.09□□□□□ -0.63
LINC00640-201ENST00000554409 MED1Q15648 1581 aaPredicted RBP11.09□□□□□ -0.63
LINC00640-201ENST00000554409 RGL3Q3MIN7 710 aa11.09□□□□□ -0.63
LINC00640-201ENST00000554409 C19orf44Q9H6X5 657 aa11.09□□□□□ -0.63
LINC00640-201ENST00000554409 ASXL1Q8IXJ9 1541 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms