RNA–Protein interactions for RNA: ENST00000553840.5

FOXN3-204, Transcript of forkhead box N3, humanhuman

TSL 4

Gene FOXN3, Length 555 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3-204ENST00000553840 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.72■■□□□ 1.87
FOXN3-204ENST00000553840 RIMS2Q9UQ26 1411 aa26.72■■□□□ 1.87
FOXN3-204ENST00000553840 SPHKAPQ2M3C7 1700 aa26.71■■□□□ 1.87
FOXN3-204ENST00000553840 SLC26A8Q96RN1 970 aa26.71■■□□□ 1.87
FOXN3-204ENST00000553840 ZFYVE9O95405 1425 aa26.71■■□□□ 1.87
FOXN3-204ENST00000553840 PLEKHG1Q9ULL1 1385 aa26.68■■□□□ 1.86
FOXN3-204ENST00000553840 HFM1A2PYH4 1435 aa26.67■■□□□ 1.86
FOXN3-204ENST00000553840 KCNA6P17658 529 aa26.67■■□□□ 1.86
FOXN3-204ENST00000553840 TRIM52Q96A61 297 aa26.64■■□□□ 1.86
FOXN3-204ENST00000553840 XIRP1Q702N8 1843 aaKnown RBP26.64■■□□□ 1.85
FOXN3-204ENST00000553840 DISP3Q9P2K9 1392 aa26.63■■□□□ 1.85
FOXN3-204ENST00000553840 PROSER2Q86WR7 435 aaPredicted RBP26.61■■□□□ 1.85
FOXN3-204ENST00000553840 SENP3Q9H4L4 574 aaPredicted RBP26.61■■□□□ 1.85
FOXN3-204ENST00000553840 NWD1Q149M9 1564 aa26.6■■□□□ 1.85
FOXN3-204ENST00000553840 HSPA1LP34931 641 aa26.6■■□□□ 1.85
FOXN3-204ENST00000553840 ALKQ9UM73 1620 aa26.6■■□□□ 1.85
FOXN3-204ENST00000553840 NKTRP30414 1462 aaKnown RBP26.6■■□□□ 1.85
FOXN3-204ENST00000553840 CHD2O14647 1828 aaKnown RBP26.59■■□□□ 1.85
FOXN3-204ENST00000553840 NUTM2DQ5VT03 806 aaPredicted RBP26.58■■□□□ 1.85
FOXN3-204ENST00000553840 TBX22Q9Y458 520 aa26.58■■□□□ 1.85
FOXN3-204ENST00000553840 TMEM94Q12767 1356 aa26.58■■□□□ 1.84
FOXN3-204ENST00000553840 KIF1BO60333 1816 aa26.56■■□□□ 1.84
FOXN3-204ENST00000553840 DIP2AQ14689 1571 aa26.56■■□□□ 1.84
FOXN3-204ENST00000553840 ZNF326Q5BKZ1 582 aaKnown RBP26.56■■□□□ 1.84
FOXN3-204ENST00000553840 TRPM2O94759 1503 aa26.55■■□□□ 1.84
FOXN3-204ENST00000553840 SLC4A1APQ9BWU0 796 aaKnown RBP26.54■■□□□ 1.84
FOXN3-204ENST00000553840 CLTCL1P53675 1640 aa26.53■■□□□ 1.84
FOXN3-204ENST00000553840 ADAMTS13Q76LX8 1427 aa26.5■■□□□ 1.83
FOXN3-204ENST00000553840 PIK3R4Q99570 1358 aa26.5■■□□□ 1.83
FOXN3-204ENST00000553840 MSH6P52701 1360 aa26.48■■□□□ 1.83
FOXN3-204ENST00000553840 RBM33Q96EV2 1170 aaKnown RBP26.48■■□□□ 1.83
FOXN3-204ENST00000553840 ACIN1Q9UKV3 1341 aaKnown RBP26.45■■□□□ 1.83
FOXN3-204ENST00000553840 SETBP1Q9Y6X0 1596 aa26.43■■□□□ 1.82
FOXN3-204ENST00000553840 FAM135BQ49AJ0 1406 aa26.42■■□□□ 1.82
FOXN3-204ENST00000553840 NCOA3Q9Y6Q9 1424 aa26.42■■□□□ 1.82
FOXN3-204ENST00000553840 C14orf37Q86TY3 774 aa26.42■■□□□ 1.82
FOXN3-204ENST00000553840 NEXMIFQ5QGS0 1516 aa26.41■■□□□ 1.82
FOXN3-204ENST00000553840 AMOTL2Q9Y2J4 779 aa26.4■■□□□ 1.82
FOXN3-204ENST00000553840 NRXN3Q9Y4C0 1643 aa26.39■■□□□ 1.82
FOXN3-204ENST00000553840 ROBO1Q9Y6N7 1651 aa26.38■■□□□ 1.81
FOXN3-204ENST00000553840 VGFO15240 615 aaPredicted RBP26.37■■□□□ 1.81
FOXN3-204ENST00000553840 MED1Q15648 1581 aaPredicted RBP26.37■■□□□ 1.81
FOXN3-204ENST00000553840 RPGRIP1LQ68CZ1 1315 aa26.37■■□□□ 1.81
FOXN3-204ENST00000553840 MPHOSPH9Q99550 1183 aa26.36■■□□□ 1.81
FOXN3-204ENST00000553840 SETD5Q9C0A6 1442 aa26.35■■□□□ 1.81
FOXN3-204ENST00000553840 SLAIN2Q9P270 581 aa26.35■■□□□ 1.81
FOXN3-204ENST00000553840 PTPRUQ92729 1446 aa26.33■■□□□ 1.81
FOXN3-204ENST00000553840 FOXD1Q16676 465 aa26.33■■□□□ 1.81
FOXN3-204ENST00000553840 ILDR2Q71H61 639 aa26.33■■□□□ 1.81
FOXN3-204ENST00000553840 C19orf44Q9H6X5 657 aa26.33■■□□□ 1.81
FOXN3-204ENST00000553840 CCDC144AA2RUR9 1427 aa26.32■■□□□ 1.8
FOXN3-204ENST00000553840 XRN1Q8IZH2 1706 aaKnown RBP26.32■■□□□ 1.8
FOXN3-204ENST00000553840 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.31■■□□□ 1.8
FOXN3-204ENST00000553840 ATF3P18847 181 aa26.31■■□□□ 1.8
FOXN3-204ENST00000553840 CADPS2Q86UW7 1296 aa26.31■■□□□ 1.8
FOXN3-204ENST00000553840 PPLO60437 1756 aa26.3■■□□□ 1.8
FOXN3-204ENST00000553840 METP08581 1390 aa26.29■■□□□ 1.8
FOXN3-204ENST00000553840 PHF23Q9BUL5 403 aaPredicted RBP26.28■■□□□ 1.8
FOXN3-204ENST00000553840 PHLPP1O60346 1717 aa26.24■■□□□ 1.79
FOXN3-204ENST00000553840 DCCP43146 1447 aa26.22■■□□□ 1.79
FOXN3-204ENST00000553840 RAB3GAP2Q9H2M9 1393 aa26.21■■□□□ 1.79
FOXN3-204ENST00000553840 RGL3Q3MIN7 710 aa26.21■■□□□ 1.79
FOXN3-204ENST00000553840 SETD1AO15047 1707 aaKnown RBP26.21■■□□□ 1.79
FOXN3-204ENST00000553840 SOCS7O14512 581 aa26.19■■□□□ 1.78
FOXN3-204ENST00000553840 SPATA31E1Q6ZUB1 1445 aa26.18■■□□□ 1.78
FOXN3-204ENST00000553840 ANKRD30BQ9BXX2 1392 aa26.18■■□□□ 1.78
FOXN3-204ENST00000553840 IFT172Q9UG01 1749 aa26.17■■□□□ 1.78
FOXN3-204ENST00000553840 ADGRL3Q9HAR2 1447 aa26.15■■□□□ 1.78
FOXN3-204ENST00000553840 PTCH1Q13635 1447 aa26.14■■□□□ 1.78
FOXN3-204ENST00000553840 NALCNQ8IZF0 1738 aa26.13■■□□□ 1.77
FOXN3-204ENST00000553840 JCADQ9P266 1359 aa26.12■■□□□ 1.77
FOXN3-204ENST00000553840 ADGRF5Q8IZF2 1346 aa26.12■■□□□ 1.77
FOXN3-204ENST00000553840 COL16A1Q07092 1604 aaPredicted RBP26.11■■□□□ 1.77
FOXN3-204ENST00000553840 AHDC1Q5TGY3 1603 aaPredicted RBP26.11■■□□□ 1.77
FOXN3-204ENST00000553840 MST1RQ04912 1400 aa26.09■■□□□ 1.77
FOXN3-204ENST00000553840 PRAG1Q86YV5 1406 aa26.09■■□□□ 1.77
FOXN3-204ENST00000553840 HRCP23327 699 aa26.09■■□□□ 1.77
FOXN3-204ENST00000553840 BRINP3Q76B58 766 aa26.09■■□□□ 1.77
FOXN3-204ENST00000553840 ROBO2Q9HCK4 1378 aa26.08■■□□□ 1.77
FOXN3-204ENST00000553840 ASXL1Q8IXJ9 1541 aa26.05■■□□□ 1.76
FOXN3-204ENST00000553840 PIK3C2GO75747 1445 aa26.04■■□□□ 1.76
FOXN3-204ENST00000553840 SPATA31A6Q5VVP1 1343 aa26.02■■□□□ 1.76
FOXN3-204ENST00000553840 SHPRHQ149N8 1683 aa26.01■■□□□ 1.75
FOXN3-204ENST00000553840 NHSL1Q5SYE7 1610 aa26.01■■□□□ 1.75
FOXN3-204ENST00000553840 STK26Q9P289 416 aa26■■□□□ 1.75
FOXN3-204ENST00000553840 MYOM2P54296 1465 aa25.99■■□□□ 1.75
FOXN3-204ENST00000553840 LRPPRCP42704 1394 aaKnown RBP25.99■■□□□ 1.75
FOXN3-204ENST00000553840 KNDC1Q76NI1 1749 aa25.99■■□□□ 1.75
FOXN3-204ENST00000553840 LAMC1P11047 1609 aa25.99■■□□□ 1.75
FOXN3-204ENST00000553840 C1orf167Q5SNV9 1468 aa25.98■■□□□ 1.75
FOXN3-204ENST00000553840 TECPR2O15040 1411 aa25.97■■□□□ 1.75
FOXN3-204ENST00000553840 TMEM132EQ6IEE7 984 aa25.97■■□□□ 1.75
FOXN3-204ENST00000553840 RGS17Q9UGC6 210 aaPredicted RBP25.97■■□□□ 1.75
FOXN3-204ENST00000553840 ABCC11Q96J66 1382 aa25.96■■□□□ 1.75
FOXN3-204ENST00000553840 LRRC59Q96AG4 307 aaKnown RBP25.96■■□□□ 1.75
FOXN3-204ENST00000553840 C14orf93Q9H972 538 aaKnown RBP25.96■■□□□ 1.75
FOXN3-204ENST00000553840 NRXN1Q9ULB1 1477 aa25.95■■□□□ 1.74
FOXN3-204ENST00000553840 MEX3CQ5U5Q3 659 aaKnown RBP25.94■■□□□ 1.74
FOXN3-204ENST00000553840 YTHDC2Q9H6S0 1430 aaKnown RBP25.94■■□□□ 1.74
FOXN3-204ENST00000553840 CDC42BPGQ6DT37 1551 aa25.93■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms