RNA–Protein interactions for RNA: ENST00000553609.5

NEDD1-205, Transcript of neural precursor cell expressed, developmentally down-regulated 1, humanhuman

TSL 3

Gene NEDD1, Length 581 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD1-205ENST00000553609 RPRD2Q5VT52 1461 aaKnown RBP22.25■■□□□ 1.15
NEDD1-205ENST00000553609 POTEAQ6S8J7 498 aa22.24■■□□□ 1.15
NEDD1-205ENST00000553609 APLP2Q06481 763 aa22.23■■□□□ 1.15
NEDD1-205ENST00000553609 PLEKHG1Q9ULL1 1385 aa22.21■■□□□ 1.15
NEDD1-205ENST00000553609 ANKRD50Q9ULJ7 1429 aa22.21■■□□□ 1.15
NEDD1-205ENST00000553609 MSH6P52701 1360 aa22.19■■□□□ 1.14
NEDD1-205ENST00000553609 TMEM131LA2VDJ0 1609 aa22.19■■□□□ 1.14
NEDD1-205ENST00000553609 MYO5BQ9ULV0 1848 aa22.18■■□□□ 1.14
NEDD1-205ENST00000553609 RIMS2Q9UQ26 1411 aa22.18■■□□□ 1.14
NEDD1-205ENST00000553609 CHD2O14647 1828 aaKnown RBP22.17■■□□□ 1.14
NEDD1-205ENST00000553609 GCC2Q8IWJ2 1684 aa22.17■■□□□ 1.14
NEDD1-205ENST00000553609 SLAIN2Q9P270 581 aa22.16■■□□□ 1.14
NEDD1-205ENST00000553609 UNC13BO14795 1591 aa22.14■■□□□ 1.13
NEDD1-205ENST00000553609 PHLPP1O60346 1717 aa22.14■■□□□ 1.13
NEDD1-205ENST00000553609 COL16A1Q07092 1604 aaPredicted RBP22.13■■□□□ 1.13
NEDD1-205ENST00000553609 ADAMTS13Q76LX8 1427 aa22.13■■□□□ 1.13
NEDD1-205ENST00000553609 BCANQ96GW7 911 aa22.12■■□□□ 1.13
NEDD1-205ENST00000553609 JCADQ9P266 1359 aa22.12■■□□□ 1.13
NEDD1-205ENST00000553609 FAM50AQ14320 339 aaKnown RBP22.11■■□□□ 1.13
NEDD1-205ENST00000553609 TBX22Q9Y458 520 aa22.11■■□□□ 1.13
NEDD1-205ENST00000553609 NCOA3Q9Y6Q9 1424 aa22.11■■□□□ 1.13
NEDD1-205ENST00000553609 E9PCH4 1651 aa22.08■■□□□ 1.13
NEDD1-205ENST00000553609 PPP1R15AO75807 674 aaPredicted RBP22.08■■□□□ 1.13
NEDD1-205ENST00000553609 LRP6O75581 1613 aa22.08■■□□□ 1.13
NEDD1-205ENST00000553609 SETD1AO15047 1707 aaKnown RBP22.08■■□□□ 1.12
NEDD1-205ENST00000553609 DIP2AQ14689 1571 aa22.08■■□□□ 1.12
NEDD1-205ENST00000553609 HDGFP51858 240 aaKnown RBP22.05■■□□□ 1.12
NEDD1-205ENST00000553609 AHDC1Q5TGY3 1603 aaPredicted RBP22.05■■□□□ 1.12
NEDD1-205ENST00000553609 PIK3R4Q99570 1358 aa22.04■■□□□ 1.12
NEDD1-205ENST00000553609 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.04■■□□□ 1.12
NEDD1-205ENST00000553609 IQGAP3Q86VI3 1631 aa22.04■■□□□ 1.12
NEDD1-205ENST00000553609 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.03■■□□□ 1.12
NEDD1-205ENST00000553609 ROCK1Q13464 1354 aa22.02■■□□□ 1.12
NEDD1-205ENST00000553609 NUTM2DQ5VT03 806 aaPredicted RBP22.02■■□□□ 1.12
NEDD1-205ENST00000553609 PTPRUQ92729 1446 aa22.01■■□□□ 1.11
NEDD1-205ENST00000553609 CHGAP10645 457 aaKnown RBP22■■□□□ 1.11
NEDD1-205ENST00000553609 SPATA31A6Q5VVP1 1343 aa22■■□□□ 1.11
NEDD1-205ENST00000553609 SHPRHQ149N8 1683 aa21.99■■□□□ 1.11
NEDD1-205ENST00000553609 CADPS2Q86UW7 1296 aa21.99■■□□□ 1.11
NEDD1-205ENST00000553609 C19orf44Q9H6X5 657 aa21.99■■□□□ 1.11
NEDD1-205ENST00000553609 TRPM2O94759 1503 aa21.98■■□□□ 1.11
NEDD1-205ENST00000553609 NRXN3Q9Y4C0 1643 aa21.97■■□□□ 1.11
NEDD1-205ENST00000553609 C14orf37Q86TY3 774 aa21.96■■□□□ 1.11
NEDD1-205ENST00000553609 XRN1Q8IZH2 1706 aaKnown RBP21.95■■□□□ 1.1
NEDD1-205ENST00000553609 ATF3P18847 181 aa21.94■■□□□ 1.1
NEDD1-205ENST00000553609 BRINP3Q76B58 766 aa21.94■■□□□ 1.1
NEDD1-205ENST00000553609 AMOTL2Q9Y2J4 779 aa21.94■■□□□ 1.1
NEDD1-205ENST00000553609 DCCP43146 1447 aa21.94■■□□□ 1.1
NEDD1-205ENST00000553609 NUP155O75694 1391 aa21.93■■□□□ 1.1
NEDD1-205ENST00000553609 SETBP1Q9Y6X0 1596 aa21.93■■□□□ 1.1
NEDD1-205ENST00000553609 ASXL1Q8IXJ9 1541 aa21.9■■□□□ 1.1
NEDD1-205ENST00000553609 MST1RQ04912 1400 aa21.89■■□□□ 1.1
NEDD1-205ENST00000553609 ZNF772Q68DY9 489 aaPredicted RBP21.89■■□□□ 1.09
NEDD1-205ENST00000553609 SETD5Q9C0A6 1442 aa21.88■■□□□ 1.09
NEDD1-205ENST00000553609 MEX3CQ5U5Q3 659 aaKnown RBP21.87■■□□□ 1.09
NEDD1-205ENST00000553609 UPF1Q92900 1129 aaKnown RBP eCLIP21.87■■□□□ 1.09
NEDD1-205ENST00000553609 NHSL1Q5SYE7 1610 aa21.87■■□□□ 1.09
NEDD1-205ENST00000553609 METP08581 1390 aa21.87■■□□□ 1.09
NEDD1-205ENST00000553609 SPHKAPQ2M3C7 1700 aa21.86■■□□□ 1.09
NEDD1-205ENST00000553609 TRIM52Q96A61 297 aa21.84■■□□□ 1.09
NEDD1-205ENST00000553609 CDK12Q9NYV4 1490 aaPredicted RBP21.83■■□□□ 1.09
NEDD1-205ENST00000553609 ADGRL3Q9HAR2 1447 aa21.82■■□□□ 1.08
NEDD1-205ENST00000553609 NEXMIFQ5QGS0 1516 aa21.81■■□□□ 1.08
NEDD1-205ENST00000553609 NUTM2BA6NNL0 878 aaPredicted RBP21.8■■□□□ 1.08
NEDD1-205ENST00000553609 NUTM2EB1AL46 878 aaPredicted RBP21.8■■□□□ 1.08
NEDD1-205ENST00000553609 NUTM2AQ8IVF1 878 aaPredicted RBP21.8■■□□□ 1.08
NEDD1-205ENST00000553609 NALCNQ8IZF0 1738 aa21.8■■□□□ 1.08
NEDD1-205ENST00000553609 CLTCL1P53675 1640 aa21.8■■□□□ 1.08
NEDD1-205ENST00000553609 RXRBP28702 533 aa21.79■■□□□ 1.08
NEDD1-205ENST00000553609 ITGAEP38570 1179 aa21.79■■□□□ 1.08
NEDD1-205ENST00000553609 AFF2P51816 1311 aa21.79■■□□□ 1.08
NEDD1-205ENST00000553609 PNPLA6Q8IY17 1366 aa21.77■■□□□ 1.08
NEDD1-205ENST00000553609 FOXD1Q16676 465 aa21.76■■□□□ 1.07
NEDD1-205ENST00000553609 DDX17Q92841 729 aaKnown RBP21.76■■□□□ 1.07
NEDD1-205ENST00000553609 ZNF326Q5BKZ1 582 aaKnown RBP21.75■■□□□ 1.07
NEDD1-205ENST00000553609 LRRC59Q96AG4 307 aaKnown RBP21.75■■□□□ 1.07
NEDD1-205ENST00000553609 LAMC1P11047 1609 aa21.73■■□□□ 1.07
NEDD1-205ENST00000553609 RGS12O14924 1447 aa21.73■■□□□ 1.07
NEDD1-205ENST00000553609 PTCH1Q13635 1447 aa21.72■■□□□ 1.07
NEDD1-205ENST00000553609 C1orf167Q5SNV9 1468 aa21.72■■□□□ 1.07
NEDD1-205ENST00000553609 PRAG1Q86YV5 1406 aa21.72■■□□□ 1.07
NEDD1-205ENST00000553609 SRCAPQ6ZRS2 3230 aa21.7■■□□□ 1.06
NEDD1-205ENST00000553609 C8orf37Q96NL8 207 aa21.69■■□□□ 1.06
NEDD1-205ENST00000553609 ROBO2Q9HCK4 1378 aa21.69■■□□□ 1.06
NEDD1-205ENST00000553609 NAIPQ13075 1403 aa21.68■■□□□ 1.06
NEDD1-205ENST00000553609 PPARGC1BQ86YN6 1023 aaKnown RBP21.67■■□□□ 1.06
NEDD1-205ENST00000553609 SOS2Q07890 1332 aaPredicted RBP21.66■■□□□ 1.06
NEDD1-205ENST00000553609 RBM6P78332 1123 aaKnown RBP21.66■■□□□ 1.06
NEDD1-205ENST00000553609 QTRT2Q9H974 415 aaKnown RBP21.66■■□□□ 1.06
NEDD1-205ENST00000553609 KIF1BO60333 1816 aa21.65■■□□□ 1.06
NEDD1-205ENST00000553609 RRBP1Q9P2E9 1410 aaKnown RBP21.64■■□□□ 1.06
NEDD1-205ENST00000553609 ORAI2Q96SN7 254 aa21.63■■□□□ 1.05
NEDD1-205ENST00000553609 ADAMTS2O95450 1211 aa21.61■■□□□ 1.05
NEDD1-205ENST00000553609 COL22A1Q8NFW1 1626 aaPredicted RBP21.59■■□□□ 1.05
NEDD1-205ENST00000553609 VGFO15240 615 aaPredicted RBP21.59■■□□□ 1.05
NEDD1-205ENST00000553609 NGLY1Q96IV0 654 aa21.59■■□□□ 1.05
NEDD1-205ENST00000553609 HFM1A2PYH4 1435 aa21.58■■□□□ 1.05
NEDD1-205ENST00000553609 MYOM2P54296 1465 aa21.57■■□□□ 1.04
NEDD1-205ENST00000553609 RPGRIP1LQ68CZ1 1315 aa21.56■■□□□ 1.04
NEDD1-205ENST00000553609 PPLO60437 1756 aa21.56■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms