RNA–Protein interactions for RNA: ENST00000553576.5

VIPAS39-204, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-204ENST00000553576 HFM1A2PYH4 1435 aa8.82□□□□□ -1
VIPAS39-204ENST00000553576 CDK13Q14004 1512 aaKnown RBP8.82□□□□□ -1
VIPAS39-204ENST00000553576 RGS20O76081 388 aa8.82□□□□□ -1
VIPAS39-204ENST00000553576 ITGAEP38570 1179 aa8.82□□□□□ -1
VIPAS39-204ENST00000553576 STAC3Q96MF2 364 aa8.82□□□□□ -1
VIPAS39-204ENST00000553576 TIMELESSQ9UNS1 1208 aa8.82□□□□□ -1
VIPAS39-204ENST00000553576 SHROOM2Q13796 1616 aa8.82□□□□□ -1
VIPAS39-204ENST00000553576 AKNAQ7Z591 1439 aa8.81□□□□□ -1
VIPAS39-204ENST00000553576 PTPRKQ15262 1439 aa8.8□□□□□ -1
VIPAS39-204ENST00000553576 MAPKBP1O60336 1514 aa8.8□□□□□ -1
VIPAS39-204ENST00000553576 IFFO2Q5TF58 517 aa8.8□□□□□ -1
VIPAS39-204ENST00000553576 TROQ12816 1431 aaPredicted RBP8.8□□□□□ -1
VIPAS39-204ENST00000553576 GCC2Q8IWJ2 1684 aa8.79□□□□□ -1
VIPAS39-204ENST00000553576 KCNK17Q96T54 332 aa8.79□□□□□ -1
VIPAS39-204ENST00000553576 IRX2Q9BZI1 471 aaPredicted RBP8.79□□□□□ -1
VIPAS39-204ENST00000553576 NAIPQ13075 1403 aa8.79□□□□□ -1
VIPAS39-204ENST00000553576 ITSN2Q9NZM3 1697 aa8.78□□□□□ -1
VIPAS39-204ENST00000553576 PLB1Q6P1J6 1458 aa8.78□□□□□ -1
VIPAS39-204ENST00000553576 PPP1R37O75864 691 aa8.78□□□□□ -1
VIPAS39-204ENST00000553576 PTPN5P54829 565 aa8.78□□□□□ -1
VIPAS39-204ENST00000553576 VPS9D1Q9Y2B5 631 aa8.77□□□□□ -1.01
VIPAS39-204ENST00000553576 PRG4Q92954 1404 aaPredicted RBP8.77□□□□□ -1.01
VIPAS39-204ENST00000553576 UACAQ9BZF9 1416 aa8.77□□□□□ -1.01
VIPAS39-204ENST00000553576 ATP10BO94823 1461 aa8.77□□□□□ -1.01
VIPAS39-204ENST00000553576 DNMT1P26358 1616 aaKnown RBP8.76□□□□□ -1.01
VIPAS39-204ENST00000553576 ROCK1Q13464 1354 aa8.76□□□□□ -1.01
VIPAS39-204ENST00000553576 FOXK1P85037 733 aa8.76□□□□□ -1.01
VIPAS39-204ENST00000553576 DIEXFQ68CQ4 756 aaKnown RBP8.76□□□□□ -1.01
VIPAS39-204ENST00000553576 KCNH8Q96L42 1107 aa8.76□□□□□ -1.01
VIPAS39-204ENST00000553576 CDC42BPAQ5VT25 1732 aa8.75□□□□□ -1.01
VIPAS39-204ENST00000553576 PTPRGP23470 1445 aa8.75□□□□□ -1.01
VIPAS39-204ENST00000553576 PLPP6Q8IY26 295 aa8.75□□□□□ -1.01
VIPAS39-204ENST00000553576 A0A0G2JS52 829 aa8.74□□□□□ -1.01
VIPAS39-204ENST00000553576 GPATCH8Q9UKJ3 1502 aaKnown RBP8.74□□□□□ -1.01
VIPAS39-204ENST00000553576 ABCC10Q5T3U5 1492 aa8.73□□□□□ -1.01
VIPAS39-204ENST00000553576 PLEKHD1A6NEE1 506 aa8.73□□□□□ -1.01
VIPAS39-204ENST00000553576 CLASP1Q7Z460 1538 aa8.73□□□□□ -1.01
VIPAS39-204ENST00000553576 DAPK1P53355 1430 aa8.72□□□□□ -1.01
VIPAS39-204ENST00000553576 TBC1D12O60347 775 aa8.72□□□□□ -1.01
VIPAS39-204ENST00000553576 THSD4Q6ZMP0 1018 aa8.72□□□□□ -1.01
VIPAS39-204ENST00000553576 KIF14Q15058 1648 aa8.72□□□□□ -1.01
VIPAS39-204ENST00000553576 ADGBQ8N7X0 1667 aa8.72□□□□□ -1.01
VIPAS39-204ENST00000553576 ABCC5O15440 1437 aa8.71□□□□□ -1.01
VIPAS39-204ENST00000553576 GPHNQ9NQX3 736 aaPredicted RBP8.71□□□□□ -1.02
VIPAS39-204ENST00000553576 CROCC2H7BZ55 1655 aa8.71□□□□□ -1.02
VIPAS39-204ENST00000553576 ECM2O94769 699 aaPredicted RBP8.7□□□□□ -1.02
VIPAS39-204ENST00000553576 DSG2Q14126 1118 aa8.7□□□□□ -1.02
VIPAS39-204ENST00000553576 SLC4A5Q9BY07 1137 aa8.7□□□□□ -1.02
VIPAS39-204ENST00000553576 ADGRL2O95490 1459 aa8.7□□□□□ -1.02
VIPAS39-204ENST00000553576 CDC42BPBQ9Y5S2 1711 aa8.69□□□□□ -1.02
VIPAS39-204ENST00000553576 BHMG1C9JSJ3 638 aaPredicted RBP8.69□□□□□ -1.02
VIPAS39-204ENST00000553576 PPP1R15AO75807 674 aaPredicted RBP8.69□□□□□ -1.02
VIPAS39-204ENST00000553576 CFDP1Q9UEE9 299 aaPredicted RBP8.69□□□□□ -1.02
VIPAS39-204ENST00000553576 UHRF1BP1LA0JNW5 1464 aa8.69□□□□□ -1.02
VIPAS39-204ENST00000553576 CAMSAP2Q08AD1 1489 aa8.69□□□□□ -1.02
VIPAS39-204ENST00000553576 ARID3CA6NKF2 412 aa8.68□□□□□ -1.02
VIPAS39-204ENST00000553576 SIN3AQ96ST3 1273 aa8.68□□□□□ -1.02
VIPAS39-204ENST00000553576 BCL2L12Q9HB09 334 aa8.68□□□□□ -1.02
VIPAS39-204ENST00000553576 RRP7BPQ9NSQ0 103 aa8.68□□□□□ -1.02
VIPAS39-204ENST00000553576 ABCC2Q92887 1545 aa8.68□□□□□ -1.02
VIPAS39-204ENST00000553576 KDM6BO15054 1643 aa8.68□□□□□ -1.02
VIPAS39-204ENST00000553576 ARHGEF5Q12774 1597 aa8.67□□□□□ -1.02
VIPAS39-204ENST00000553576 NCOA1Q15788 1441 aa8.67□□□□□ -1.02
VIPAS39-204ENST00000553576 RSPH4AQ5TD94 716 aa8.67□□□□□ -1.02
VIPAS39-204ENST00000553576 ERCC6L2Q5T890 1561 aa8.66□□□□□ -1.02
VIPAS39-204ENST00000553576 DENND4BO75064 1496 aaPredicted RBP8.66□□□□□ -1.02
VIPAS39-204ENST00000553576 SHANK2Q9UPX8 1470 aa8.66□□□□□ -1.02
VIPAS39-204ENST00000553576 ZNF644Q9H582 1327 aaPredicted RBP8.66□□□□□ -1.02
VIPAS39-204ENST00000553576 RGL2O15211 777 aa8.66□□□□□ -1.02
VIPAS39-204ENST00000553576 ZNF454Q8N9F8 522 aa8.66□□□□□ -1.02
VIPAS39-204ENST00000553576 WNT2BQ93097 391 aa8.66□□□□□ -1.02
VIPAS39-204ENST00000553576 CHIC2Q9UKJ5 165 aa8.66□□□□□ -1.02
VIPAS39-204ENST00000553576 PREX2Q70Z35 1606 aa8.65□□□□□ -1.02
VIPAS39-204ENST00000553576 KDM5BQ9UGL1 1544 aa8.64□□□□□ -1.03
VIPAS39-204ENST00000553576 GOLGA8CPA6NN73 597 aa8.64□□□□□ -1.03
VIPAS39-204ENST00000553576 OXER1Q8TDS5 423 aa8.64□□□□□ -1.03
VIPAS39-204ENST00000553576 MPHOSPH9Q99550 1183 aa8.64□□□□□ -1.03
VIPAS39-204ENST00000553576 MYO5CQ9NQX4 1742 aa8.63□□□□□ -1.03
VIPAS39-204ENST00000553576 ANKRD30AQ9BXX3 1397 aa8.63□□□□□ -1.03
VIPAS39-204ENST00000553576 NEUROD1Q13562 356 aa8.63□□□□□ -1.03
VIPAS39-204ENST00000553576 MRPL50Q8N5N7 158 aaKnown RBP8.63□□□□□ -1.03
VIPAS39-204ENST00000553576 ZBED2Q9BTP6 218 aa8.63□□□□□ -1.03
VIPAS39-204ENST00000553576 MBD5Q9P267 1494 aa8.63□□□□□ -1.03
VIPAS39-204ENST00000553576 ZCCHC11Q5TAX3 1644 aaKnown RBP8.62□□□□□ -1.03
VIPAS39-204ENST00000553576 PTPREP23469 700 aa8.62□□□□□ -1.03
VIPAS39-204ENST00000553576 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.62□□□□□ -1.03
VIPAS39-204ENST00000553576 TONSLQ96HA7 1378 aa8.61□□□□□ -1.03
VIPAS39-204ENST00000553576 ANKRD30BQ9BXX2 1392 aa8.61□□□□□ -1.03
VIPAS39-204ENST00000553576 SAMD9LQ8IVG5 1584 aa8.61□□□□□ -1.03
VIPAS39-204ENST00000553576 MAST1Q9Y2H9 1570 aa8.61□□□□□ -1.03
VIPAS39-204ENST00000553576 FOSBP53539 338 aa8.61□□□□□ -1.03
VIPAS39-204ENST00000553576 UPF1Q92900 1129 aaKnown RBP eCLIP8.61□□□□□ -1.03
VIPAS39-204ENST00000553576 TRIM52Q96A61 297 aa8.61□□□□□ -1.03
VIPAS39-204ENST00000553576 KIAA1107Q9UPP5 1409 aa8.61□□□□□ -1.03
VIPAS39-204ENST00000553576 PLEKHH2Q8IVE3 1493 aa8.6□□□□□ -1.03
VIPAS39-204ENST00000553576 TSPY4P0CV99 314 aa8.6□□□□□ -1.03
VIPAS39-204ENST00000553576 TSPY10P0CW01 314 aa8.6□□□□□ -1.03
VIPAS39-204ENST00000553576 ARAP3Q8WWN8 1544 aa8.59□□□□□ -1.03
VIPAS39-204ENST00000553576 PZPP20742 1482 aa8.59□□□□□ -1.03
VIPAS39-204ENST00000553576 PKD2Q13563 968 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms