RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 TMEM131LA2VDJ0 1609 aa22.79■■□□□ 1.24
SHMT2-204ENST00000553324 ZFYVE9O95405 1425 aa22.78■■□□□ 1.24
SHMT2-204ENST00000553324 ZNF326Q5BKZ1 582 aaKnown RBP22.77■■□□□ 1.24
SHMT2-204ENST00000553324 SLC26A8Q96RN1 970 aa22.77■■□□□ 1.24
SHMT2-204ENST00000553324 PLEKHG1Q9ULL1 1385 aa22.76■■□□□ 1.23
SHMT2-204ENST00000553324 HRCP23327 699 aa22.76■■□□□ 1.23
SHMT2-204ENST00000553324 KCNA6P17658 529 aa22.74■■□□□ 1.23
SHMT2-204ENST00000553324 UBAP1LF5GYI3 381 aa22.73■■□□□ 1.23
SHMT2-204ENST00000553324 TBX22Q9Y458 520 aa22.73■■□□□ 1.23
SHMT2-204ENST00000553324 SPHKAPQ2M3C7 1700 aa22.73■■□□□ 1.23
SHMT2-204ENST00000553324 TRPM2O94759 1503 aa22.72■■□□□ 1.23
SHMT2-204ENST00000553324 TOM1O60784 492 aa22.72■■□□□ 1.23
SHMT2-204ENST00000553324 NUTM2DQ5VT03 806 aaPredicted RBP22.71■■□□□ 1.23
SHMT2-204ENST00000553324 RAB3GAP2Q9H2M9 1393 aa22.71■■□□□ 1.23
SHMT2-204ENST00000553324 FOXD1Q16676 465 aa22.69■■□□□ 1.22
SHMT2-204ENST00000553324 RPGRIP1LQ68CZ1 1315 aa22.68■■□□□ 1.22
SHMT2-204ENST00000553324 VGFO15240 615 aaPredicted RBP22.66■■□□□ 1.22
SHMT2-204ENST00000553324 SENP3Q9H4L4 574 aaPredicted RBP22.65■■□□□ 1.22
SHMT2-204ENST00000553324 LRRC7Q96NW7 1537 aa22.65■■□□□ 1.22
SHMT2-204ENST00000553324 CCDC144AA2RUR9 1427 aa22.64■■□□□ 1.21
SHMT2-204ENST00000553324 MYO5BQ9ULV0 1848 aa22.64■■□□□ 1.21
SHMT2-204ENST00000553324 PIK3R4Q99570 1358 aa22.63■■□□□ 1.21
SHMT2-204ENST00000553324 PROSER2Q86WR7 435 aaPredicted RBP22.63■■□□□ 1.21
SHMT2-204ENST00000553324 CLTCL1P53675 1640 aa22.63■■□□□ 1.21
SHMT2-204ENST00000553324 ADAMTS13Q76LX8 1427 aa22.6■■□□□ 1.21
SHMT2-204ENST00000553324 PIP4K2BP78356 416 aa22.57■■□□□ 1.2
SHMT2-204ENST00000553324 TMEM94Q12767 1356 aa22.57■■□□□ 1.2
SHMT2-204ENST00000553324 DIP2AQ14689 1571 aa22.57■■□□□ 1.2
SHMT2-204ENST00000553324 KIF1BO60333 1816 aa22.57■■□□□ 1.2
SHMT2-204ENST00000553324 STRCP1A6NGW2 1772 aa22.56■■□□□ 1.2
SHMT2-204ENST00000553324 NKTRP30414 1462 aaKnown RBP22.56■■□□□ 1.2
SHMT2-204ENST00000553324 SCAF1Q9H7N4 1312 aaKnown RBP22.56■■□□□ 1.2
SHMT2-204ENST00000553324 RGL3Q3MIN7 710 aa22.55■■□□□ 1.2
SHMT2-204ENST00000553324 AMOTL2Q9Y2J4 779 aa22.55■■□□□ 1.2
SHMT2-204ENST00000553324 NEXMIFQ5QGS0 1516 aa22.54■■□□□ 1.2
SHMT2-204ENST00000553324 SETBP1Q9Y6X0 1596 aa22.52■■□□□ 1.2
SHMT2-204ENST00000553324 NCOA3Q9Y6Q9 1424 aa22.52■■□□□ 1.2
SHMT2-204ENST00000553324 NWD1Q149M9 1564 aa22.51■■□□□ 1.19
SHMT2-204ENST00000553324 ANKRD30BQ9BXX2 1392 aa22.5■■□□□ 1.19
SHMT2-204ENST00000553324 SPATA31E1Q6ZUB1 1445 aa22.5■■□□□ 1.19
SHMT2-204ENST00000553324 RBM33Q96EV2 1170 aaKnown RBP22.49■■□□□ 1.19
SHMT2-204ENST00000553324 MSH6P52701 1360 aa22.49■■□□□ 1.19
SHMT2-204ENST00000553324 C14orf37Q86TY3 774 aa22.48■■□□□ 1.19
SHMT2-204ENST00000553324 CHD2O14647 1828 aaKnown RBP22.47■■□□□ 1.19
SHMT2-204ENST00000553324 METP08581 1390 aa22.47■■□□□ 1.19
SHMT2-204ENST00000553324 C19orf44Q9H6X5 657 aa22.46■■□□□ 1.19
SHMT2-204ENST00000553324 PTPRUQ92729 1446 aa22.44■■□□□ 1.18
SHMT2-204ENST00000553324 ADGRF5Q8IZF2 1346 aa22.43■■□□□ 1.18
SHMT2-204ENST00000553324 HSPA1LP34931 641 aa22.42■■□□□ 1.18
SHMT2-204ENST00000553324 CADPS2Q86UW7 1296 aa22.42■■□□□ 1.18
SHMT2-204ENST00000553324 STAC3Q96MF2 364 aa22.42■■□□□ 1.18
SHMT2-204ENST00000553324 SLAIN2Q9P270 581 aa22.42■■□□□ 1.18
SHMT2-204ENST00000553324 NRXN3Q9Y4C0 1643 aa22.42■■□□□ 1.18
SHMT2-204ENST00000553324 ATF3P18847 181 aa22.41■■□□□ 1.18
SHMT2-204ENST00000553324 FAM135BQ49AJ0 1406 aa22.4■■□□□ 1.18
SHMT2-204ENST00000553324 TRIM26Q12899 539 aaPredicted RBP22.39■■□□□ 1.17
SHMT2-204ENST00000553324 ALKQ9UM73 1620 aa22.39■■□□□ 1.17
SHMT2-204ENST00000553324 XIRP1Q702N8 1843 aaKnown RBP22.38■■□□□ 1.17
SHMT2-204ENST00000553324 PPLO60437 1756 aa22.37■■□□□ 1.17
SHMT2-204ENST00000553324 C14orf93Q9H972 538 aaKnown RBP22.34■■□□□ 1.17
SHMT2-204ENST00000553324 PIK3C2GO75747 1445 aa22.32■■□□□ 1.16
SHMT2-204ENST00000553324 DCAF11Q8TEB1 546 aa22.32■■□□□ 1.16
SHMT2-204ENST00000553324 DCCP43146 1447 aa22.31■■□□□ 1.16
SHMT2-204ENST00000553324 PTCH1Q13635 1447 aa22.31■■□□□ 1.16
SHMT2-204ENST00000553324 XRN1Q8IZH2 1706 aaKnown RBP22.31■■□□□ 1.16
SHMT2-204ENST00000553324 PRAG1Q86YV5 1406 aa22.31■■□□□ 1.16
SHMT2-204ENST00000553324 MYOM2P54296 1465 aa22.3■■□□□ 1.16
SHMT2-204ENST00000553324 KDM2AQ9Y2K7 1162 aa22.29■■□□□ 1.16
SHMT2-204ENST00000553324 LRPPRCP42704 1394 aaKnown RBP22.28■■□□□ 1.16
SHMT2-204ENST00000553324 ABCC11Q96J66 1382 aa22.28■■□□□ 1.16
SHMT2-204ENST00000553324 ROBO2Q9HCK4 1378 aa22.28■■□□□ 1.16
SHMT2-204ENST00000553324 TMEM132EQ6IEE7 984 aa22.28■■□□□ 1.16
SHMT2-204ENST00000553324 STK26Q9P289 416 aa22.28■■□□□ 1.16
SHMT2-204ENST00000553324 NRXN1Q9ULB1 1477 aa22.28■■□□□ 1.16
SHMT2-204ENST00000553324 CFAP70Q5T0N1 1121 aa22.27■■□□□ 1.16
SHMT2-204ENST00000553324 SIRT1Q96EB6 747 aa22.27■■□□□ 1.16
SHMT2-204ENST00000553324 DHX57Q6P158 1386 aaKnown RBP22.26■■□□□ 1.15
SHMT2-204ENST00000553324 IFT172Q9UG01 1749 aa22.26■■□□□ 1.15
SHMT2-204ENST00000553324 ADGRL3Q9HAR2 1447 aa22.25■■□□□ 1.15
SHMT2-204ENST00000553324 SETD1AO15047 1707 aaKnown RBP22.24■■□□□ 1.15
SHMT2-204ENST00000553324 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.23■■□□□ 1.15
SHMT2-204ENST00000553324 TECPR2O15040 1411 aa22.23■■□□□ 1.15
SHMT2-204ENST00000553324 DISP3Q9P2K9 1392 aa22.22■■□□□ 1.15
SHMT2-204ENST00000553324 YTHDC2Q9H6S0 1430 aaKnown RBP22.22■■□□□ 1.15
SHMT2-204ENST00000553324 BRINP3Q76B58 766 aa22.2■■□□□ 1.14
SHMT2-204ENST00000553324 WAPLQ7Z5K2 1190 aa22.2■■□□□ 1.14
SHMT2-204ENST00000553324 ROBO1Q9Y6N7 1651 aa22.2■■□□□ 1.14
SHMT2-204ENST00000553324 MST1RQ04912 1400 aa22.17■■□□□ 1.14
SHMT2-204ENST00000553324 LAMC1P11047 1609 aa22.15■■□□□ 1.14
SHMT2-204ENST00000553324 POGKQ9P215 609 aa22.14■■□□□ 1.13
SHMT2-204ENST00000553324 ASXL1Q8IXJ9 1541 aa22.13■■□□□ 1.13
SHMT2-204ENST00000553324 C1orf167Q5SNV9 1468 aa22.12■■□□□ 1.13
SHMT2-204ENST00000553324 NEUROD1Q13562 356 aa22.12■■□□□ 1.13
SHMT2-204ENST00000553324 PRAM1Q96QH2 718 aa22.12■■□□□ 1.13
SHMT2-204ENST00000553324 SIN3AQ96ST3 1273 aa22.12■■□□□ 1.13
SHMT2-204ENST00000553324 JCADQ9P266 1359 aa22.12■■□□□ 1.13
SHMT2-204ENST00000553324 TRAK1Q9UPV9 953 aa22.11■■□□□ 1.13
SHMT2-204ENST00000553324 L3MBTL2Q969R5 705 aa22.1■■□□□ 1.13
SHMT2-204ENST00000553324 PLEKHH1Q9ULM0 1364 aa22.1■■□□□ 1.13
SHMT2-204ENST00000553324 NALCNQ8IZF0 1738 aa22.09■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms