RNA–Protein interactions for RNA: ENST00000552828.5

CKAP4-202, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 3

Gene CKAP4, Length 831 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-202ENST00000552828 RGS17Q9UGC6 210 aaPredicted RBP18.32■□□□□ 0.52
CKAP4-202ENST00000552828 NWD1Q149M9 1564 aa18.32■□□□□ 0.52
CKAP4-202ENST00000552828 PLEKHG1Q9ULL1 1385 aa18.31■□□□□ 0.52
CKAP4-202ENST00000552828 HDGFP51858 240 aaKnown RBP18.31■□□□□ 0.52
CKAP4-202ENST00000552828 RBM33Q96EV2 1170 aaKnown RBP18.29■□□□□ 0.52
CKAP4-202ENST00000552828 ROCK1Q13464 1354 aa18.29■□□□□ 0.52
CKAP4-202ENST00000552828 RIMS2Q9UQ26 1411 aa18.28■□□□□ 0.52
CKAP4-202ENST00000552828 BCANQ96GW7 911 aa18.27■□□□□ 0.52
CKAP4-202ENST00000552828 TBX22Q9Y458 520 aa18.27■□□□□ 0.52
CKAP4-202ENST00000552828 TMEM131LA2VDJ0 1609 aa18.27■□□□□ 0.51
CKAP4-202ENST00000552828 UNC13BO14795 1591 aa18.26■□□□□ 0.51
CKAP4-202ENST00000552828 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.26■□□□□ 0.51
CKAP4-202ENST00000552828 SLAIN2Q9P270 581 aa18.26■□□□□ 0.51
CKAP4-202ENST00000552828 MSH6P52701 1360 aa18.26■□□□□ 0.51
CKAP4-202ENST00000552828 ROBO1Q9Y6N7 1651 aa18.25■□□□□ 0.51
CKAP4-202ENST00000552828 NCOA3Q9Y6Q9 1424 aa18.24■□□□□ 0.51
CKAP4-202ENST00000552828 PPP1R15AO75807 674 aaPredicted RBP18.24■□□□□ 0.51
CKAP4-202ENST00000552828 GCC2Q8IWJ2 1684 aa18.23■□□□□ 0.51
CKAP4-202ENST00000552828 ADAMTS13Q76LX8 1427 aa18.21■□□□□ 0.51
CKAP4-202ENST00000552828 CHD2O14647 1828 aaKnown RBP18.21■□□□□ 0.51
CKAP4-202ENST00000552828 PIK3R4Q99570 1358 aa18.2■□□□□ 0.5
CKAP4-202ENST00000552828 IQGAP3Q86VI3 1631 aa18.2■□□□□ 0.5
CKAP4-202ENST00000552828 E9PCH4 1651 aa18.19■□□□□ 0.5
CKAP4-202ENST00000552828 MYO5BQ9ULV0 1848 aa18.19■□□□□ 0.5
CKAP4-202ENST00000552828 NUP155O75694 1391 aa18.18■□□□□ 0.5
CKAP4-202ENST00000552828 CHGAP10645 457 aaKnown RBP18.18■□□□□ 0.5
CKAP4-202ENST00000552828 POTEAQ6S8J7 498 aa18.18■□□□□ 0.5
CKAP4-202ENST00000552828 DIP2AQ14689 1571 aa18.17■□□□□ 0.5
CKAP4-202ENST00000552828 JCADQ9P266 1359 aa18.17■□□□□ 0.5
CKAP4-202ENST00000552828 C19orf44Q9H6X5 657 aa18.16■□□□□ 0.5
CKAP4-202ENST00000552828 NUTM2DQ5VT03 806 aaPredicted RBP18.15■□□□□ 0.5
CKAP4-202ENST00000552828 CADPS2Q86UW7 1296 aa18.14■□□□□ 0.49
CKAP4-202ENST00000552828 C14orf37Q86TY3 774 aa18.11■□□□□ 0.49
CKAP4-202ENST00000552828 AMOTL2Q9Y2J4 779 aa18.11■□□□□ 0.49
CKAP4-202ENST00000552828 PHLPP1O60346 1717 aa18.11■□□□□ 0.49
CKAP4-202ENST00000552828 COL16A1Q07092 1604 aaPredicted RBP18.1■□□□□ 0.49
CKAP4-202ENST00000552828 TRPM2O94759 1503 aa18.1■□□□□ 0.49
CKAP4-202ENST00000552828 PTPRUQ92729 1446 aa18.1■□□□□ 0.49
CKAP4-202ENST00000552828 ATF3P18847 181 aa18.1■□□□□ 0.49
CKAP4-202ENST00000552828 ITGAEP38570 1179 aa18.1■□□□□ 0.49
CKAP4-202ENST00000552828 SPATA31A6Q5VVP1 1343 aa18.08■□□□□ 0.49
CKAP4-202ENST00000552828 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.07■□□□□ 0.48
CKAP4-202ENST00000552828 AHDC1Q5TGY3 1603 aaPredicted RBP18.07■□□□□ 0.48
CKAP4-202ENST00000552828 DCCP43146 1447 aa18.06■□□□□ 0.48
CKAP4-202ENST00000552828 SETBP1Q9Y6X0 1596 aa18.06■□□□□ 0.48
CKAP4-202ENST00000552828 BRINP3Q76B58 766 aa18.05■□□□□ 0.48
CKAP4-202ENST00000552828 LRP6O75581 1613 aa18.04■□□□□ 0.48
CKAP4-202ENST00000552828 NRXN3Q9Y4C0 1643 aa18.04■□□□□ 0.48
CKAP4-202ENST00000552828 PPARGC1BQ86YN6 1023 aaKnown RBP18.03■□□□□ 0.48
CKAP4-202ENST00000552828 METP08581 1390 aa18.03■□□□□ 0.48
CKAP4-202ENST00000552828 ZNF326Q5BKZ1 582 aaKnown RBP18.02■□□□□ 0.48
CKAP4-202ENST00000552828 XRN1Q8IZH2 1706 aaKnown RBP18.02■□□□□ 0.48
CKAP4-202ENST00000552828 SPHKAPQ2M3C7 1700 aa18.01■□□□□ 0.47
CKAP4-202ENST00000552828 ZNF772Q68DY9 489 aaPredicted RBP18■□□□□ 0.47
CKAP4-202ENST00000552828 MST1RQ04912 1400 aa17.99■□□□□ 0.47
CKAP4-202ENST00000552828 RRBP1Q9P2E9 1410 aaKnown RBP17.99■□□□□ 0.47
CKAP4-202ENST00000552828 SHPRHQ149N8 1683 aa17.99■□□□□ 0.47
CKAP4-202ENST00000552828 NAIPQ13075 1403 aa17.98■□□□□ 0.47
CKAP4-202ENST00000552828 MEX3CQ5U5Q3 659 aaKnown RBP17.98■□□□□ 0.47
CKAP4-202ENST00000552828 NEXMIFQ5QGS0 1516 aa17.98■□□□□ 0.47
CKAP4-202ENST00000552828 ASXL1Q8IXJ9 1541 aa17.98■□□□□ 0.47
CKAP4-202ENST00000552828 SETD5Q9C0A6 1442 aa17.98■□□□□ 0.47
CKAP4-202ENST00000552828 CLTCL1P53675 1640 aa17.96■□□□□ 0.47
CKAP4-202ENST00000552828 ADGRL3Q9HAR2 1447 aa17.96■□□□□ 0.47
CKAP4-202ENST00000552828 LRRC59Q96AG4 307 aaKnown RBP17.94■□□□□ 0.46
CKAP4-202ENST00000552828 VGFO15240 615 aaPredicted RBP17.92■□□□□ 0.46
CKAP4-202ENST00000552828 RPGRIP1LQ68CZ1 1315 aa17.91■□□□□ 0.46
CKAP4-202ENST00000552828 NHSL1Q5SYE7 1610 aa17.9■□□□□ 0.46
CKAP4-202ENST00000552828 HFM1A2PYH4 1435 aa17.9■□□□□ 0.46
CKAP4-202ENST00000552828 PTCH1Q13635 1447 aa17.9■□□□□ 0.46
CKAP4-202ENST00000552828 PRAG1Q86YV5 1406 aa17.9■□□□□ 0.46
CKAP4-202ENST00000552828 SETD1AO15047 1707 aaKnown RBP17.9■□□□□ 0.46
CKAP4-202ENST00000552828 NUTM2BA6NNL0 878 aaPredicted RBP17.9■□□□□ 0.46
CKAP4-202ENST00000552828 NUTM2EB1AL46 878 aaPredicted RBP17.9■□□□□ 0.46
CKAP4-202ENST00000552828 RXRBP28702 533 aa17.9■□□□□ 0.46
CKAP4-202ENST00000552828 NUTM2AQ8IVF1 878 aaPredicted RBP17.9■□□□□ 0.46
CKAP4-202ENST00000552828 CDK12Q9NYV4 1490 aaPredicted RBP17.88■□□□□ 0.45
CKAP4-202ENST00000552828 UPF1Q92900 1129 aaKnown RBP eCLIP17.88■□□□□ 0.45
CKAP4-202ENST00000552828 PNPLA6Q8IY17 1366 aa17.88■□□□□ 0.45
CKAP4-202ENST00000552828 ROBO2Q9HCK4 1378 aa17.88■□□□□ 0.45
CKAP4-202ENST00000552828 C1orf167Q5SNV9 1468 aa17.88■□□□□ 0.45
CKAP4-202ENST00000552828 DDX17Q92841 729 aaKnown RBP17.87■□□□□ 0.45
CKAP4-202ENST00000552828 TRIM52Q96A61 297 aa17.87■□□□□ 0.45
CKAP4-202ENST00000552828 AFF2P51816 1311 aa17.87■□□□□ 0.45
CKAP4-202ENST00000552828 NALCNQ8IZF0 1738 aa17.86■□□□□ 0.45
CKAP4-202ENST00000552828 KIF1BO60333 1816 aa17.86■□□□□ 0.45
CKAP4-202ENST00000552828 SLC4A1APQ9BWU0 796 aaKnown RBP17.85■□□□□ 0.45
CKAP4-202ENST00000552828 LAMC1P11047 1609 aa17.84■□□□□ 0.45
CKAP4-202ENST00000552828 SOS2Q07890 1332 aaPredicted RBP17.84■□□□□ 0.45
CKAP4-202ENST00000552828 C8orf37Q96NL8 207 aa17.82■□□□□ 0.44
CKAP4-202ENST00000552828 ORAI2Q96SN7 254 aa17.82■□□□□ 0.44
CKAP4-202ENST00000552828 QTRT2Q9H974 415 aaKnown RBP17.81■□□□□ 0.44
CKAP4-202ENST00000552828 RBM6P78332 1123 aaKnown RBP17.8■□□□□ 0.44
CKAP4-202ENST00000552828 NGLY1Q96IV0 654 aa17.77■□□□□ 0.44
CKAP4-202ENST00000552828 PPLO60437 1756 aa17.76■□□□□ 0.43
CKAP4-202ENST00000552828 RGS12O14924 1447 aa17.76■□□□□ 0.43
CKAP4-202ENST00000552828 ADAMTS2O95450 1211 aa17.76■□□□□ 0.43
CKAP4-202ENST00000552828 FOXD1Q16676 465 aa17.76■□□□□ 0.43
CKAP4-202ENST00000552828 ADGRF5Q8IZF2 1346 aa17.75■□□□□ 0.43
CKAP4-202ENST00000552828 SPATA31E1Q6ZUB1 1445 aa17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms