RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 KIAA0556O60303 1618 aa6.27□□□□□ -1.41
LIMA1-214ENST00000552783 MAGI1Q96QZ7 1491 aaPredicted RBP6.27□□□□□ -1.41
LIMA1-214ENST00000552783 ADAMTS12P58397 1594 aa6.26□□□□□ -1.41
LIMA1-214ENST00000552783 A2MP01023 1474 aa6.26□□□□□ -1.41
LIMA1-214ENST00000552783 ERBINQ96RT1 1412 aa6.26□□□□□ -1.41
LIMA1-214ENST00000552783 AMER1Q5JTC6 1135 aaPredicted RBP6.26□□□□□ -1.41
LIMA1-214ENST00000552783 TRMT2AQ8IZ69 625 aaKnown RBP6.26□□□□□ -1.41
LIMA1-214ENST00000552783 WDR43Q15061 677 aaKnown RBP eCLIP6.26□□□□□ -1.41
LIMA1-214ENST00000552783 TBC1D2Q9BYX2 928 aa6.26□□□□□ -1.41
LIMA1-214ENST00000552783 CDC42BPAQ5VT25 1732 aa6.25□□□□□ -1.41
LIMA1-214ENST00000552783 OSCARQ8IYS5 282 aa6.25□□□□□ -1.41
LIMA1-214ENST00000552783 PTPRGP23470 1445 aa6.25□□□□□ -1.41
LIMA1-214ENST00000552783 CHD1O14646 1710 aa6.25□□□□□ -1.41
LIMA1-214ENST00000552783 WDR7Q9Y4E6 1490 aa6.25□□□□□ -1.41
LIMA1-214ENST00000552783 RLBP1P12271 317 aa6.25□□□□□ -1.41
LIMA1-214ENST00000552783 PCDHB15Q9Y5E8 787 aa6.25□□□□□ -1.41
LIMA1-214ENST00000552783 TNNT2P45379 298 aaPredicted RBP6.24□□□□□ -1.41
LIMA1-214ENST00000552783 GPRASP1Q5JY77 1395 aa6.24□□□□□ -1.41
LIMA1-214ENST00000552783 ERBB4Q15303 1308 aa6.24□□□□□ -1.41
LIMA1-214ENST00000552783 CCDC144AA2RUR9 1427 aa6.24□□□□□ -1.41
LIMA1-214ENST00000552783 BCL2L13Q9BXK5 485 aa6.24□□□□□ -1.41
LIMA1-214ENST00000552783 PLEKHH2Q8IVE3 1493 aa6.24□□□□□ -1.41
LIMA1-214ENST00000552783 FAM135AQ9P2D6 1515 aa6.24□□□□□ -1.41
LIMA1-214ENST00000552783 ADCY10Q96PN6 1610 aa6.24□□□□□ -1.41
LIMA1-214ENST00000552783 TMF1P82094 1093 aa6.24□□□□□ -1.41
LIMA1-214ENST00000552783 INSRP06213 1382 aa6.24□□□□□ -1.41
LIMA1-214ENST00000552783 EIF3AQ14152 1382 aaKnown RBP6.24□□□□□ -1.41
LIMA1-214ENST00000552783 PRDM15P57071 1507 aaPredicted RBP6.23□□□□□ -1.41
LIMA1-214ENST00000552783 SYNJ2O15056 1496 aa6.23□□□□□ -1.41
LIMA1-214ENST00000552783 PKNOX2Q96KN3 472 aa6.23□□□□□ -1.41
LIMA1-214ENST00000552783 NAP1L5Q96NT1 182 aaPredicted RBP6.23□□□□□ -1.41
LIMA1-214ENST00000552783 KNSTRNQ9Y448 316 aa6.23□□□□□ -1.41
LIMA1-214ENST00000552783 VIRMAQ69YN4 1812 aaKnown RBP6.23□□□□□ -1.41
LIMA1-214ENST00000552783 FSD2A1L4K1 749 aa6.23□□□□□ -1.41
LIMA1-214ENST00000552783 CANXP27824 592 aaKnown RBP6.23□□□□□ -1.41
LIMA1-214ENST00000552783 NEUROD2Q15784 382 aa6.23□□□□□ -1.41
LIMA1-214ENST00000552783 VSIG10Q8N0Z9 540 aa6.23□□□□□ -1.41
LIMA1-214ENST00000552783 CLUAP1Q96AJ1 413 aa6.23□□□□□ -1.41
LIMA1-214ENST00000552783 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.23□□□□□ -1.41
LIMA1-214ENST00000552783 ZMYND15Q9H091 742 aa6.23□□□□□ -1.41
LIMA1-214ENST00000552783 RRP7AQ9Y3A4 280 aaKnown RBP6.23□□□□□ -1.41
LIMA1-214ENST00000552783 ITSN2Q9NZM3 1697 aa6.22□□□□□ -1.41
LIMA1-214ENST00000552783 NKTRP30414 1462 aaKnown RBP6.22□□□□□ -1.41
LIMA1-214ENST00000552783 TBC1D32Q96NH3 1257 aa6.22□□□□□ -1.41
LIMA1-214ENST00000552783 GRIN2AQ12879 1464 aa6.21□□□□□ -1.41
LIMA1-214ENST00000552783 MCM4P33991 863 aa6.21□□□□□ -1.42
LIMA1-214ENST00000552783 PDZRN3Q9UPQ7 1066 aa6.21□□□□□ -1.42
LIMA1-214ENST00000552783 ABCC10Q5T3U5 1492 aa6.21□□□□□ -1.42
LIMA1-214ENST00000552783 CLASP1Q7Z460 1538 aa6.21□□□□□ -1.42
LIMA1-214ENST00000552783 GOLGA6L3A6NEY3 463 aa6.2□□□□□ -1.42
LIMA1-214ENST00000552783 CLCN1P35523 988 aa6.2□□□□□ -1.42
LIMA1-214ENST00000552783 BECN1Q14457 450 aa6.2□□□□□ -1.42
LIMA1-214ENST00000552783 WWC1Q8IX03 1113 aa6.2□□□□□ -1.42
LIMA1-214ENST00000552783 CARD14Q9BXL6 1004 aa6.2□□□□□ -1.42
LIMA1-214ENST00000552783 PNNQ9H307 717 aaKnown RBP6.2□□□□□ -1.42
LIMA1-214ENST00000552783 MYO5CQ9NQX4 1742 aa6.2□□□□□ -1.42
LIMA1-214ENST00000552783 TRAK2O60296 914 aa6.2□□□□□ -1.42
LIMA1-214ENST00000552783 GAS2L3Q86XJ1 694 aa6.2□□□□□ -1.42
LIMA1-214ENST00000552783 E9PSI1 815 aa6.19□□□□□ -1.42
LIMA1-214ENST00000552783 L1TD1Q5T7N2 865 aaKnown RBP6.19□□□□□ -1.42
LIMA1-214ENST00000552783 CENPJQ9HC77 1338 aaPredicted RBP6.19□□□□□ -1.42
LIMA1-214ENST00000552783 RTEL1-TNFRSF6BF6WH68 1400 aa6.19□□□□□ -1.42
LIMA1-214ENST00000552783 SHANK2Q9UPX8 1470 aa6.19□□□□□ -1.42
LIMA1-214ENST00000552783 ATP10BO94823 1461 aa6.19□□□□□ -1.42
LIMA1-214ENST00000552783 CGNL1Q0VF96 1302 aa6.19□□□□□ -1.42
LIMA1-214ENST00000552783 MAPK8IP3Q9UPT6 1336 aa6.19□□□□□ -1.42
LIMA1-214ENST00000552783 KIF3BO15066 747 aa6.19□□□□□ -1.42
LIMA1-214ENST00000552783 RARSP54136 660 aaKnown RBP6.19□□□□□ -1.42
LIMA1-214ENST00000552783 MFAP1P55081 439 aaKnown RBP6.19□□□□□ -1.42
LIMA1-214ENST00000552783 SAFB2Q14151 953 aaKnown RBP eCLIP6.19□□□□□ -1.42
LIMA1-214ENST00000552783 PDE3AQ14432 1141 aa6.19□□□□□ -1.42
LIMA1-214ENST00000552783 AFAP1Q8N556 730 aa6.19□□□□□ -1.42
LIMA1-214ENST00000552783 HSP90AA2PQ14568 343 aaPredicted RBP6.18□□□□□ -1.42
LIMA1-214ENST00000552783 NUTM2DQ5VT03 806 aaPredicted RBP6.18□□□□□ -1.42
LIMA1-214ENST00000552783 ZNF692Q9BU19 519 aaPredicted RBP6.18□□□□□ -1.42
LIMA1-214ENST00000552783 EFCAB2Q5VUJ9 269 aa6.18□□□□□ -1.42
LIMA1-214ENST00000552783 RIMBP3CA6NJZ7 1639 aa6.18□□□□□ -1.42
LIMA1-214ENST00000552783 RIMBP3BA6NNM3 1639 aa6.18□□□□□ -1.42
LIMA1-214ENST00000552783 RIMBP3Q9UFD9 1639 aa6.18□□□□□ -1.42
LIMA1-214ENST00000552783 NUP160Q12769 1436 aa6.18□□□□□ -1.42
LIMA1-214ENST00000552783 GGT6Q6P531 493 aa6.17□□□□□ -1.42
LIMA1-214ENST00000552783 ASXL1Q8IXJ9 1541 aa6.17□□□□□ -1.42
LIMA1-214ENST00000552783 PIK3C2GO75747 1445 aa6.17□□□□□ -1.42
LIMA1-214ENST00000552783 GRPEL1Q9HAV7 217 aa6.17□□□□□ -1.42
LIMA1-214ENST00000552783 CCDC141Q6ZP82 1450 aa6.17□□□□□ -1.42
LIMA1-214ENST00000552783 SAMD9LQ8IVG5 1584 aa6.17□□□□□ -1.42
LIMA1-214ENST00000552783 SPAG9O60271 1321 aaKnown RBP6.17□□□□□ -1.42
LIMA1-214ENST00000552783 MYOM1P52179 1685 aa6.17□□□□□ -1.42
LIMA1-214ENST00000552783 C22orf23Q9BZE7 217 aa6.17□□□□□ -1.42
LIMA1-214ENST00000552783 LAMC1P11047 1609 aa6.16□□□□□ -1.42
LIMA1-214ENST00000552783 ESPNB1AK53 854 aa6.16□□□□□ -1.42
LIMA1-214ENST00000552783 HSP90AA1P07900 732 aaKnown RBP6.16□□□□□ -1.42
LIMA1-214ENST00000552783 FOXD4L1Q9NU39 408 aa6.16□□□□□ -1.42
LIMA1-214ENST00000552783 ABCA8O94911 1581 aa6.16□□□□□ -1.42
LIMA1-214ENST00000552783 CD2BP2O95400 341 aaKnown RBP6.16□□□□□ -1.42
LIMA1-214ENST00000552783 NPM1P06748 294 aaKnown RBP eCLIP6.16□□□□□ -1.42
LIMA1-214ENST00000552783 ARHGAP5Q13017 1502 aa6.15□□□□□ -1.42
LIMA1-214ENST00000552783 ABCC2Q92887 1545 aa6.15□□□□□ -1.42
LIMA1-214ENST00000552783 RSPH4AQ5TD94 716 aa6.15□□□□□ -1.42
LIMA1-214ENST00000552783 TCP11L2Q8N4U5 519 aa6.15□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 93.4 ms