RNA–Protein interactions for RNA: ENST00000551642.1

DEPDC4-210, Transcript of DEP domain containing 4, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene DEPDC4, Length 1,033 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-210ENST00000551642 ILDR2Q71H61 639 aa12.4□□□□□ -0.42
DEPDC4-210ENST00000551642 RBM27Q9P2N5 1060 aaKnown RBP12.4□□□□□ -0.42
DEPDC4-210ENST00000551642 PACS2Q86VP3 889 aa12.39□□□□□ -0.43
DEPDC4-210ENST00000551642 CDCA7LQ96GN5 454 aa12.39□□□□□ -0.43
DEPDC4-210ENST00000551642 TSKSQ9UJT2 592 aa12.39□□□□□ -0.43
DEPDC4-210ENST00000551642 SOCS7O14512 581 aa12.38□□□□□ -0.43
DEPDC4-210ENST00000551642 THSD4Q6ZMP0 1018 aa12.38□□□□□ -0.43
DEPDC4-210ENST00000551642 WNT2BQ93097 391 aa12.38□□□□□ -0.43
DEPDC4-210ENST00000551642 CDHR5Q9HBB8 845 aa12.38□□□□□ -0.43
DEPDC4-210ENST00000551642 NPDC1Q9NQX5 325 aaPredicted RBP12.37□□□□□ -0.43
DEPDC4-210ENST00000551642 ADGRL1O94910 1474 aa12.36□□□□□ -0.43
DEPDC4-210ENST00000551642 POLA1P09884 1462 aaPredicted RBP12.36□□□□□ -0.43
DEPDC4-210ENST00000551642 SEMA3EO15041 775 aa12.36□□□□□ -0.43
DEPDC4-210ENST00000551642 ABCC8Q09428 1581 aa12.35□□□□□ -0.43
DEPDC4-210ENST00000551642 RAD54L2Q9Y4B4 1467 aa12.35□□□□□ -0.43
DEPDC4-210ENST00000551642 TDRD9Q8NDG6 1382 aaKnown RBP12.35□□□□□ -0.43
DEPDC4-210ENST00000551642 FAM98CQ17RN3 349 aaKnown RBP12.35□□□□□ -0.43
DEPDC4-210ENST00000551642 TSPOAP1O95153 1857 aa12.35□□□□□ -0.43
DEPDC4-210ENST00000551642 CHMP7Q8WUX9 453 aaPredicted RBP12.34□□□□□ -0.43
DEPDC4-210ENST00000551642 ZFRQ96KR1 1074 aaKnown RBP12.34□□□□□ -0.43
DEPDC4-210ENST00000551642 TESPA1A2RU30 521 aaPredicted RBP12.33□□□□□ -0.44
DEPDC4-210ENST00000551642 TTC13Q8NBP0 860 aa12.33□□□□□ -0.44
DEPDC4-210ENST00000551642 ANKK1Q8NFD2 765 aa12.33□□□□□ -0.44
DEPDC4-210ENST00000551642 FAM198AQ9UFP1 575 aa12.33□□□□□ -0.44
DEPDC4-210ENST00000551642 SEPT9Q9UHD8 586 aaPredicted RBP12.32□□□□□ -0.44
DEPDC4-210ENST00000551642 SYNJ2O15056 1496 aa12.32□□□□□ -0.44
DEPDC4-210ENST00000551642 MAGI1Q96QZ7 1491 aaPredicted RBP12.32□□□□□ -0.44
DEPDC4-210ENST00000551642 DIP2BQ9P265 1576 aa12.31□□□□□ -0.44
DEPDC4-210ENST00000551642 ABCC10Q5T3U5 1492 aa12.31□□□□□ -0.44
DEPDC4-210ENST00000551642 SOWAHBA6NEL2 793 aa12.3□□□□□ -0.44
DEPDC4-210ENST00000551642 SMYD5Q6GMV2 418 aa12.3□□□□□ -0.44
DEPDC4-210ENST00000551642 NBPF26B4DH59 902 aa12.29□□□□□ -0.44
DEPDC4-210ENST00000551642 PTPN5P54829 565 aa12.29□□□□□ -0.44
DEPDC4-210ENST00000551642 TOP2AP11388 1531 aaKnown RBP12.28□□□□□ -0.44
DEPDC4-210ENST00000551642 FAM69CQ0P6D2 419 aa12.28□□□□□ -0.44
DEPDC4-210ENST00000551642 PTGDRQ13258 359 aa12.28□□□□□ -0.44
DEPDC4-210ENST00000551642 TATDN2Q93075 761 aa12.28□□□□□ -0.44
DEPDC4-210ENST00000551642 CEP170Q5SW79 1584 aa12.27□□□□□ -0.44
DEPDC4-210ENST00000551642 WDR97A6NE52 1622 aa12.27□□□□□ -0.44
DEPDC4-210ENST00000551642 PBRM1Q86U86 1689 aa12.26□□□□□ -0.45
DEPDC4-210ENST00000551642 PADI6Q6TGC4 694 aa12.25□□□□□ -0.45
DEPDC4-210ENST00000551642 PNMA3Q9UL41 463 aa12.25□□□□□ -0.45
DEPDC4-210ENST00000551642 C3orf80F5H4A9 247 aa12.24□□□□□ -0.45
DEPDC4-210ENST00000551642 NYAP1Q6ZVC0 841 aa12.24□□□□□ -0.45
DEPDC4-210ENST00000551642 SHROOM2Q13796 1616 aa12.23□□□□□ -0.45
DEPDC4-210ENST00000551642 BCAMP50895 628 aa12.23□□□□□ -0.45
DEPDC4-210ENST00000551642 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.23□□□□□ -0.45
DEPDC4-210ENST00000551642 GRIN2BQ13224 1484 aa12.22□□□□□ -0.45
DEPDC4-210ENST00000551642 SOGA1O94964 1423 aa12.22□□□□□ -0.45
DEPDC4-210ENST00000551642 NUTM2FA1L443 756 aa12.22□□□□□ -0.45
DEPDC4-210ENST00000551642 SMAPO00193 183 aa12.22□□□□□ -0.45
DEPDC4-210ENST00000551642 NUDT18Q6ZVK8 323 aa12.22□□□□□ -0.45
DEPDC4-210ENST00000551642 LRCH3Q96II8 777 aa12.22□□□□□ -0.45
DEPDC4-210ENST00000551642 PLA2G2EQ9NZK7 142 aa12.22□□□□□ -0.45
DEPDC4-210ENST00000551642 FCHSD2O94868 740 aa12.21□□□□□ -0.45
DEPDC4-210ENST00000551642 MAPKBP1O60336 1514 aa12.21□□□□□ -0.46
DEPDC4-210ENST00000551642 IFFO2Q5TF58 517 aa12.19□□□□□ -0.46
DEPDC4-210ENST00000551642 TSR3Q9UJK0 312 aaKnown RBP12.19□□□□□ -0.46
DEPDC4-210ENST00000551642 EYA1Q99502 592 aa12.18□□□□□ -0.46
DEPDC4-210ENST00000551642 PPRC1Q5VV67 1664 aaKnown RBP12.18□□□□□ -0.46
DEPDC4-210ENST00000551642 DISP3Q9P2K9 1392 aa12.18□□□□□ -0.46
DEPDC4-210ENST00000551642 SAMD7Q7Z3H4 446 aa12.17□□□□□ -0.46
DEPDC4-210ENST00000551642 CCDC88BA6NC98 1476 aa12.16□□□□□ -0.46
DEPDC4-210ENST00000551642 HIC1Q14526 733 aa12.16□□□□□ -0.46
DEPDC4-210ENST00000551642 RBM26Q5T8P6 1007 aaKnown RBP12.16□□□□□ -0.46
DEPDC4-210ENST00000551642 WBP1LQ9NX94 342 aa12.16□□□□□ -0.46
DEPDC4-210ENST00000551642 HDGFP51858 240 aaKnown RBP12.15□□□□□ -0.46
DEPDC4-210ENST00000551642 HPS5Q9UPZ3 1129 aa12.15□□□□□ -0.46
DEPDC4-210ENST00000551642 FGD5Q6ZNL6 1462 aa12.14□□□□□ -0.47
DEPDC4-210ENST00000551642 ADGRG1Q9Y653 693 aa12.13□□□□□ -0.47
DEPDC4-210ENST00000551642 ADCY10Q96PN6 1610 aa12.12□□□□□ -0.47
DEPDC4-210ENST00000551642 PPP4CP60510 307 aa12.12□□□□□ -0.47
DEPDC4-210ENST00000551642 RBM46Q8TBY0 533 aaKnown RBP12.12□□□□□ -0.47
DEPDC4-210ENST00000551642 GPR37O15354 613 aa12.11□□□□□ -0.47
DEPDC4-210ENST00000551642 ITGBL1O95965 494 aaPredicted RBP12.11□□□□□ -0.47
DEPDC4-210ENST00000551642 NUP160Q12769 1436 aa12.11□□□□□ -0.47
DEPDC4-210ENST00000551642 GRIN2AQ12879 1464 aa12.1□□□□□ -0.47
DEPDC4-210ENST00000551642 NECTIN2Q92692 538 aa12.1□□□□□ -0.47
DEPDC4-210ENST00000551642 COL17A1Q9UMD9 1497 aaPredicted RBP12.09□□□□□ -0.47
DEPDC4-210ENST00000551642 TULP1O00294 542 aaPredicted RBP12.08□□□□□ -0.48
DEPDC4-210ENST00000551642 GNPATO15228 680 aa12.08□□□□□ -0.48
DEPDC4-210ENST00000551642 DNAJB2P25686 324 aa12.08□□□□□ -0.48
DEPDC4-210ENST00000551642 SWT1Q5T5J6 900 aaKnown RBP12.08□□□□□ -0.48
DEPDC4-210ENST00000551642 ABCA5Q8WWZ7 1642 aa12.08□□□□□ -0.48
DEPDC4-210ENST00000551642 OATP04181 439 aa12.07□□□□□ -0.48
DEPDC4-210ENST00000551642 SLF2Q8IX21 1173 aa12.07□□□□□ -0.48
DEPDC4-210ENST00000551642 SPATA31D1Q6ZQQ2 1576 aa12.05□□□□□ -0.48
DEPDC4-210ENST00000551642 GPIHBP1Q8IV16 184 aa12.05□□□□□ -0.48
DEPDC4-210ENST00000551642 TMEM134Q9H6X4 195 aa12.05□□□□□ -0.48
DEPDC4-210ENST00000551642 SLC4A3P48751 1232 aa12.04□□□□□ -0.48
DEPDC4-210ENST00000551642 PXYLP1Q8TE99 480 aa12.04□□□□□ -0.48
DEPDC4-210ENST00000551642 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.03□□□□□ -0.48
DEPDC4-210ENST00000551642 PRG4Q92954 1404 aaPredicted RBP12.03□□□□□ -0.48
DEPDC4-210ENST00000551642 CUX1P39880 1505 aa12.02□□□□□ -0.48
DEPDC4-210ENST00000551642 ADAMTS12P58397 1594 aa12.02□□□□□ -0.49
DEPDC4-210ENST00000551642 TOP2BQ02880 1626 aa12.02□□□□□ -0.49
DEPDC4-210ENST00000551642 RCCD1A6NED2 376 aa12.02□□□□□ -0.49
DEPDC4-210ENST00000551642 FECHP22830 423 aa12.01□□□□□ -0.49
DEPDC4-210ENST00000551642 FAM161AQ3B820 660 aa12.01□□□□□ -0.49
DEPDC4-210ENST00000551642 KCNC4Q03721 635 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms