RNA–Protein interactions for RNA: ENST00000551642.1

DEPDC4-210, Transcript of DEP domain containing 4, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene DEPDC4, Length 1,033 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-210ENST00000551642 AEBP2Q6ZN18 517 aaPredicted RBP29.85■■■□□ 2.37
DEPDC4-210ENST00000551642 CHIC1Q5VXU3 224 aa28.83■■■□□ 2.21
DEPDC4-210ENST00000551642 SENP3Q9H4L4 574 aaPredicted RBP25.45■■□□□ 1.66
DEPDC4-210ENST00000551642 PHF23Q9BUL5 403 aaPredicted RBP25.27■■□□□ 1.64
DEPDC4-210ENST00000551642 FOXD1Q16676 465 aa23.62■■□□□ 1.37
DEPDC4-210ENST00000551642 PLPPR3Q6T4P5 718 aa23.25■■□□□ 1.31
DEPDC4-210ENST00000551642 PPP6R1Q9UPN7 881 aa22.4■■□□□ 1.18
DEPDC4-210ENST00000551642 ADRA2BP18089 450 aa22.34■■□□□ 1.17
DEPDC4-210ENST00000551642 PIAS4Q8N2W9 510 aaPredicted RBP22.15■■□□□ 1.14
DEPDC4-210ENST00000551642 MSH5O43196 834 aa21.99■■□□□ 1.11
DEPDC4-210ENST00000551642 POTEDQ86YR6 584 aa20.65■□□□□ 0.9
DEPDC4-210ENST00000551642 SCAF1Q9H7N4 1312 aaKnown RBP20.54■□□□□ 0.88
DEPDC4-210ENST00000551642 PPP4R3CPQ6ZMV5 832 aa20.4■□□□□ 0.86
DEPDC4-210ENST00000551642 MAPK8IP2Q13387 824 aaPredicted RBP20.37■□□□□ 0.85
DEPDC4-210ENST00000551642 DMRT2Q9Y5R5 561 aa20.25■□□□□ 0.83
DEPDC4-210ENST00000551642 CNKSR2Q8WXI2 1034 aa19.96■□□□□ 0.79
DEPDC4-210ENST00000551642 NCBP3Q53F19 620 aaKnown RBP19.79■□□□□ 0.76
DEPDC4-210ENST00000551642 HOXD11P31277 338 aaPredicted RBP19.71■□□□□ 0.75
DEPDC4-210ENST00000551642 RNF216Q9NWF9 866 aaPredicted RBP19.67■□□□□ 0.74
DEPDC4-210ENST00000551642 NPM3O75607 178 aaKnown RBP19.45■□□□□ 0.7
DEPDC4-210ENST00000551642 KCNA4P22459 653 aa19.44■□□□□ 0.7
DEPDC4-210ENST00000551642 DCAF8L1A6NGE4 600 aa19.26■□□□□ 0.67
DEPDC4-210ENST00000551642 DNAJC5BQ9UF47 199 aa19.13■□□□□ 0.65
DEPDC4-210ENST00000551642 RNF39Q9H2S5 420 aa18.79■□□□□ 0.6
DEPDC4-210ENST00000551642 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.69■□□□□ 0.58
DEPDC4-210ENST00000551642 C1QBPQ07021 282 aaKnown RBP18.58■□□□□ 0.56
DEPDC4-210ENST00000551642 CACNB1Q02641 598 aaPredicted RBP18.52■□□□□ 0.56
DEPDC4-210ENST00000551642 SLC4A2P04920 1241 aa18.47■□□□□ 0.55
DEPDC4-210ENST00000551642 SLC4A1APQ9BWU0 796 aaKnown RBP18.46■□□□□ 0.55
DEPDC4-210ENST00000551642 U3KPZ7 1027 aaPredicted RBP18.37■□□□□ 0.53
DEPDC4-210ENST00000551642 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.08■□□□□ 0.48
DEPDC4-210ENST00000551642 HNRNPUL2Q1KMD3 747 aaKnown RBP18.08■□□□□ 0.48
DEPDC4-210ENST00000551642 FOXD4L1Q9NU39 408 aa18.06■□□□□ 0.48
DEPDC4-210ENST00000551642 MYCNP04198 464 aaPredicted RBP18.02■□□□□ 0.48
DEPDC4-210ENST00000551642 APLP2Q06481 763 aa17.99■□□□□ 0.47
DEPDC4-210ENST00000551642 SAMD1Q6SPF0 538 aaPredicted RBP17.98■□□□□ 0.47
DEPDC4-210ENST00000551642 SPINK5Q9NQ38 1064 aaPredicted RBP17.93■□□□□ 0.46
DEPDC4-210ENST00000551642 CAPN15O75808 1086 aa17.88■□□□□ 0.45
DEPDC4-210ENST00000551642 ZBTB22O15209 634 aa17.87■□□□□ 0.45
DEPDC4-210ENST00000551642 ZNF219Q9P2Y4 722 aaPredicted RBP17.77■□□□□ 0.44
DEPDC4-210ENST00000551642 DSG3P32926 999 aa17.74■□□□□ 0.43
DEPDC4-210ENST00000551642 TRHP20396 242 aaPredicted RBP17.68■□□□□ 0.42
DEPDC4-210ENST00000551642 ATXN8OSP0DMR3 200 aa17.54■□□□□ 0.4
DEPDC4-210ENST00000551642 CSRNP3Q8WYN3 585 aa17.49■□□□□ 0.39
DEPDC4-210ENST00000551642 ATF5Q9Y2D1 282 aaPredicted RBP17.49■□□□□ 0.39
DEPDC4-210ENST00000551642 ABCB7O75027 752 aa17.46■□□□□ 0.39
DEPDC4-210ENST00000551642 EHMT2Q96KQ7 1210 aa17.39■□□□□ 0.37
DEPDC4-210ENST00000551642 POLA2Q14181 598 aa17.34■□□□□ 0.37
DEPDC4-210ENST00000551642 ZBTB12Q9Y330 459 aaPredicted RBP17.11■□□□□ 0.33
DEPDC4-210ENST00000551642 RBM42Q9BTD8 480 aaKnown RBP16.95■□□□□ 0.3
DEPDC4-210ENST00000551642 FBLN2P98095 1184 aa16.84■□□□□ 0.29
DEPDC4-210ENST00000551642 OSCARQ8IYS5 282 aa16.75■□□□□ 0.27
DEPDC4-210ENST00000551642 MKRN4PQ13434 485 aaPredicted RBP16.74■□□□□ 0.27
DEPDC4-210ENST00000551642 AKT1S1Q96B36 256 aa16.65■□□□□ 0.26
DEPDC4-210ENST00000551642 SPDYE2BA6NHP3 402 aa16.62■□□□□ 0.25
DEPDC4-210ENST00000551642 SPDYE6P0CI01 402 aa16.62■□□□□ 0.25
DEPDC4-210ENST00000551642 SPDYE2Q495Y8 402 aa16.62■□□□□ 0.25
DEPDC4-210ENST00000551642 NISCHQ9Y2I1 1504 aa16.51■□□□□ 0.23
DEPDC4-210ENST00000551642 REM2Q8IYK8 340 aaPredicted RBP16.44■□□□□ 0.22
DEPDC4-210ENST00000551642 SSUH2Q9Y2M2 353 aa16.44■□□□□ 0.22
DEPDC4-210ENST00000551642 ZNF692Q9BU19 519 aaPredicted RBP16.43■□□□□ 0.22
DEPDC4-210ENST00000551642 CHRDL2Q6WN34 429 aa16.34■□□□□ 0.21
DEPDC4-210ENST00000551642 POTEHQ6S545 545 aa16.28■□□□□ 0.2
DEPDC4-210ENST00000551642 PITPNM1O00562 1244 aa16.24■□□□□ 0.19
DEPDC4-210ENST00000551642 SPDYE1Q8NFV5 336 aaPredicted RBP16.2■□□□□ 0.18
DEPDC4-210ENST00000551642 SPDYE4A6NLX3 237 aa16.18■□□□□ 0.18
DEPDC4-210ENST00000551642 PABPN1Q86U42 306 aaKnown RBP eCLIP16.18■□□□□ 0.18
DEPDC4-210ENST00000551642 ABCC9O60706 1549 aa16.11■□□□□ 0.17
DEPDC4-210ENST00000551642 FXR2P51116 673 aaKnown RBP eCLIP16.08■□□□□ 0.16
DEPDC4-210ENST00000551642 PIP4P2Q8N4L2 257 aa16.05■□□□□ 0.16
DEPDC4-210ENST00000551642 CLEC11AQ9Y240 323 aa16.05■□□□□ 0.16
DEPDC4-210ENST00000551642 PROM2Q8N271 834 aa15.94■□□□□ 0.14
DEPDC4-210ENST00000551642 STAG3Q9UJ98 1225 aa15.93■□□□□ 0.14
DEPDC4-210ENST00000551642 PRR29P0C7W0 189 aa15.91■□□□□ 0.14
DEPDC4-210ENST00000551642 PRKAR2AP13861 404 aaKnown RBP15.82■□□□□ 0.12
DEPDC4-210ENST00000551642 FKBP8Q14318 412 aa15.79■□□□□ 0.12
DEPDC4-210ENST00000551642 CHADLQ6NUI6 762 aa15.7■□□□□ 0.1
DEPDC4-210ENST00000551642 CREBZFQ9NS37 354 aa15.62■□□□□ 0.09
DEPDC4-210ENST00000551642 HAX1O00165 279 aa15.6■□□□□ 0.09
DEPDC4-210ENST00000551642 FARP1Q9Y4F1 1045 aaPredicted RBP15.58■□□□□ 0.08
DEPDC4-210ENST00000551642 C19orf67A6NJJ6 358 aa15.53■□□□□ 0.08
DEPDC4-210ENST00000551642 SP7Q8TDD2 431 aaPredicted RBP15.48■□□□□ 0.07
DEPDC4-210ENST00000551642 MNX1P50219 401 aaPredicted RBP15.44■□□□□ 0.06
DEPDC4-210ENST00000551642 EVX2Q03828 476 aa15.44■□□□□ 0.06
DEPDC4-210ENST00000551642 FBXO3Q9UK99 471 aa15.42■□□□□ 0.06
DEPDC4-210ENST00000551642 NPM1P06748 294 aaKnown RBP eCLIP15.38■□□□□ 0.05
DEPDC4-210ENST00000551642 PLEKHG5O94827 1062 aa15.37■□□□□ 0.05
DEPDC4-210ENST00000551642 MIER1Q8N108 512 aa15.36■□□□□ 0.05
DEPDC4-210ENST00000551642 CD44P16070 742 aaKnown RBP15.35■□□□□ 0.05
DEPDC4-210ENST00000551642 PLCD3Q8N3E9 789 aa15.29■□□□□ 0.04
DEPDC4-210ENST00000551642 DNAJC5Q9H3Z4 198 aa15.27■□□□□ 0.04
DEPDC4-210ENST00000551642 CCDC180Q9P1Z9 1646 aa15.25■□□□□ 0.03
DEPDC4-210ENST00000551642 ZBTB47Q9UFB7 747 aaPredicted RBP15.24■□□□□ 0.03
DEPDC4-210ENST00000551642 CLCN6P51797 869 aa15.22■□□□□ 0.03
DEPDC4-210ENST00000551642 PAK3O75914 559 aaPredicted RBP15.2■□□□□ 0.02
DEPDC4-210ENST00000551642 ZRANB1Q9UGI0 708 aa15.2■□□□□ 0.02
DEPDC4-210ENST00000551642 ZNF579Q8NAF0 562 aaKnown RBP15.19■□□□□ 0.02
DEPDC4-210ENST00000551642 VASPP50552 380 aaPredicted RBP15.17■□□□□ 0.02
DEPDC4-210ENST00000551642 GABBR2O75899 941 aa15.16■□□□□ 0.02
DEPDC4-210ENST00000551642 NUBP1P53384 320 aa15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms