RNA–Protein interactions for RNA: ENST00000550051.5

TRAFD1-207, Transcript of TRAF-type zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene TRAFD1, Length 1,003 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAFD1-207ENST00000550051 ADGRL2O95490 1459 aa15.35■□□□□ 0.05
TRAFD1-207ENST00000550051 HDGFP51858 240 aaKnown RBP15.35■□□□□ 0.05
TRAFD1-207ENST00000550051 RPRD2Q5VT52 1461 aaKnown RBP15.34■□□□□ 0.05
TRAFD1-207ENST00000550051 ADGRB3O60242 1522 aa15.33■□□□□ 0.05
TRAFD1-207ENST00000550051 NKTRP30414 1462 aaKnown RBP15.33■□□□□ 0.04
TRAFD1-207ENST00000550051 RBM33Q96EV2 1170 aaKnown RBP15.32■□□□□ 0.04
TRAFD1-207ENST00000550051 SLAIN2Q9P270 581 aa15.32■□□□□ 0.04
TRAFD1-207ENST00000550051 NWD1Q149M9 1564 aa15.32■□□□□ 0.04
TRAFD1-207ENST00000550051 ROBO1Q9Y6N7 1651 aa15.32■□□□□ 0.04
TRAFD1-207ENST00000550051 BCANQ96GW7 911 aa15.31■□□□□ 0.04
TRAFD1-207ENST00000550051 TBX22Q9Y458 520 aa15.31■□□□□ 0.04
TRAFD1-207ENST00000550051 ANKRD50Q9ULJ7 1429 aa15.31■□□□□ 0.04
TRAFD1-207ENST00000550051 CHD2O14647 1828 aaKnown RBP15.31■□□□□ 0.04
TRAFD1-207ENST00000550051 ZFYVE9O95405 1425 aa15.3■□□□□ 0.04
TRAFD1-207ENST00000550051 MSH6P52701 1360 aa15.3■□□□□ 0.04
TRAFD1-207ENST00000550051 POTEAQ6S8J7 498 aa15.3■□□□□ 0.04
TRAFD1-207ENST00000550051 PLEKHG1Q9ULL1 1385 aa15.3■□□□□ 0.04
TRAFD1-207ENST00000550051 NCOA3Q9Y6Q9 1424 aa15.28■□□□□ 0.04
TRAFD1-207ENST00000550051 FAM50AQ14320 339 aaKnown RBP15.28■□□□□ 0.04
TRAFD1-207ENST00000550051 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.28■□□□□ 0.04
TRAFD1-207ENST00000550051 MYO5BQ9ULV0 1848 aa15.28■□□□□ 0.04
TRAFD1-207ENST00000550051 TMEM131LA2VDJ0 1609 aa15.28■□□□□ 0.04
TRAFD1-207ENST00000550051 RIMS2Q9UQ26 1411 aa15.26■□□□□ 0.03
TRAFD1-207ENST00000550051 PPP1R15AO75807 674 aaPredicted RBP15.25■□□□□ 0.03
TRAFD1-207ENST00000550051 GCC2Q8IWJ2 1684 aa15.25■□□□□ 0.03
TRAFD1-207ENST00000550051 JCADQ9P266 1359 aa15.24■□□□□ 0.03
TRAFD1-207ENST00000550051 PHLPP1O60346 1717 aa15.23■□□□□ 0.03
TRAFD1-207ENST00000550051 C19orf44Q9H6X5 657 aa15.23■□□□□ 0.03
TRAFD1-207ENST00000550051 PIK3R4Q99570 1358 aa15.23■□□□□ 0.03
TRAFD1-207ENST00000550051 UNC13BO14795 1591 aa15.21■□□□□ 0.03
TRAFD1-207ENST00000550051 ADAMTS13Q76LX8 1427 aa15.21■□□□□ 0.03
TRAFD1-207ENST00000550051 CADPS2Q86UW7 1296 aa15.21■□□□□ 0.03
TRAFD1-207ENST00000550051 ROCK1Q13464 1354 aa15.21■□□□□ 0.02
TRAFD1-207ENST00000550051 CHGAP10645 457 aaKnown RBP15.2■□□□□ 0.02
TRAFD1-207ENST00000550051 E9PCH4 1651 aa15.19■□□□□ 0.02
TRAFD1-207ENST00000550051 SPATA31A6Q5VVP1 1343 aa15.18■□□□□ 0.02
TRAFD1-207ENST00000550051 COL16A1Q07092 1604 aaPredicted RBP15.18■□□□□ 0.02
TRAFD1-207ENST00000550051 ATF3P18847 181 aa15.18■□□□□ 0.02
TRAFD1-207ENST00000550051 DIP2AQ14689 1571 aa15.18■□□□□ 0.02
TRAFD1-207ENST00000550051 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.17■□□□□ 0.02
TRAFD1-207ENST00000550051 NCBP3Q53F19 620 aaKnown RBP15.17■□□□□ 0.02
TRAFD1-207ENST00000550051 C14orf37Q86TY3 774 aa15.17■□□□□ 0.02
TRAFD1-207ENST00000550051 IQGAP3Q86VI3 1631 aa15.17■□□□□ 0.02
TRAFD1-207ENST00000550051 NUTM2DQ5VT03 806 aaPredicted RBP15.16■□□□□ 0.02
TRAFD1-207ENST00000550051 AMOTL2Q9Y2J4 779 aa15.16■□□□□ 0.02
TRAFD1-207ENST00000550051 NUP155O75694 1391 aa15.14■□□□□ 0.01
TRAFD1-207ENST00000550051 ZNF772Q68DY9 489 aaPredicted RBP15.14■□□□□ 0.01
TRAFD1-207ENST00000550051 AHDC1Q5TGY3 1603 aaPredicted RBP15.14■□□□□ 0.01
TRAFD1-207ENST00000550051 TRPM2O94759 1503 aa15.12■□□□□ 0.01
TRAFD1-207ENST00000550051 PTPRUQ92729 1446 aa15.12■□□□□ 0.01
TRAFD1-207ENST00000550051 MAPK8IP2Q13387 824 aaPredicted RBP15.12■□□□□ 0.01
TRAFD1-207ENST00000550051 BRINP3Q76B58 766 aa15.12■□□□□ 0.01
TRAFD1-207ENST00000550051 SHPRHQ149N8 1683 aa15.12■□□□□ 0.01
TRAFD1-207ENST00000550051 LRP6O75581 1613 aa15.11■□□□□ 0.01
TRAFD1-207ENST00000550051 DCCP43146 1447 aa15.1■□□□□ 0.01
TRAFD1-207ENST00000550051 MEX3CQ5U5Q3 659 aaKnown RBP15.1■□□□□ 0.01
TRAFD1-207ENST00000550051 SETBP1Q9Y6X0 1596 aa15.08■□□□□ 0
TRAFD1-207ENST00000550051 NRXN3Q9Y4C0 1643 aa15.07■□□□□ 0
TRAFD1-207ENST00000550051 SETD1AO15047 1707 aaKnown RBP15.07■□□□□ 0
TRAFD1-207ENST00000550051 NPM3O75607 178 aaKnown RBP15.07■□□□□ 0
TRAFD1-207ENST00000550051 RXRBP28702 533 aa15.07■□□□□ 0
TRAFD1-207ENST00000550051 UPF1Q92900 1129 aaKnown RBP eCLIP15.07■□□□□ 0
TRAFD1-207ENST00000550051 SETD5Q9C0A6 1442 aa15.07■□□□□ 0
TRAFD1-207ENST00000550051 XRN1Q8IZH2 1706 aaKnown RBP15.06■□□□□ 0
TRAFD1-207ENST00000550051 ITGAEP38570 1179 aa15.06■□□□□ 0
TRAFD1-207ENST00000550051 LRRC59Q96AG4 307 aaKnown RBP15.06■□□□□ 0
TRAFD1-207ENST00000550051 CNKSR2Q8WXI2 1034 aa15.05■□□□□ -0
TRAFD1-207ENST00000550051 METP08581 1390 aa15.05■□□□□ -0
TRAFD1-207ENST00000550051 SPHKAPQ2M3C7 1700 aa15.05■□□□□ -0
TRAFD1-207ENST00000550051 MST1RQ04912 1400 aa15.04■□□□□ -0
TRAFD1-207ENST00000550051 ZNF326Q5BKZ1 582 aaKnown RBP15.04■□□□□ -0
TRAFD1-207ENST00000550051 ASXL1Q8IXJ9 1541 aa15.03■□□□□ -0
TRAFD1-207ENST00000550051 CDK12Q9NYV4 1490 aaPredicted RBP15.03■□□□□ -0
TRAFD1-207ENST00000550051 NUTM2BA6NNL0 878 aaPredicted RBP15.03■□□□□ -0
TRAFD1-207ENST00000550051 NUTM2EB1AL46 878 aaPredicted RBP15.03■□□□□ -0
TRAFD1-207ENST00000550051 NUTM2AQ8IVF1 878 aaPredicted RBP15.03■□□□□ -0
TRAFD1-207ENST00000550051 TRIM52Q96A61 297 aa15.03■□□□□ -0
TRAFD1-207ENST00000550051 NHSL1Q5SYE7 1610 aa15.02□□□□□ -0.01
TRAFD1-207ENST00000550051 AFF2P51816 1311 aa15□□□□□ -0.01
TRAFD1-207ENST00000550051 ADGRL3Q9HAR2 1447 aa15□□□□□ -0.01
TRAFD1-207ENST00000550051 NEXMIFQ5QGS0 1516 aa14.99□□□□□ -0.01
TRAFD1-207ENST00000550051 VGFO15240 615 aaPredicted RBP14.98□□□□□ -0.01
TRAFD1-207ENST00000550051 KIF1BO60333 1816 aa14.97□□□□□ -0.01
TRAFD1-207ENST00000550051 CLTCL1P53675 1640 aa14.97□□□□□ -0.01
TRAFD1-207ENST00000550051 DDX17Q92841 729 aaKnown RBP14.97□□□□□ -0.01
TRAFD1-207ENST00000550051 QTRT2Q9H974 415 aaKnown RBP14.97□□□□□ -0.01
TRAFD1-207ENST00000550051 PNPLA6Q8IY17 1366 aa14.97□□□□□ -0.01
TRAFD1-207ENST00000550051 RBM6P78332 1123 aaKnown RBP14.96□□□□□ -0.01
TRAFD1-207ENST00000550051 LAMC1P11047 1609 aa14.95□□□□□ -0.02
TRAFD1-207ENST00000550051 RPGRIP1LQ68CZ1 1315 aa14.95□□□□□ -0.02
TRAFD1-207ENST00000550051 NALCNQ8IZF0 1738 aa14.95□□□□□ -0.02
TRAFD1-207ENST00000550051 PPARGC1BQ86YN6 1023 aaKnown RBP14.95□□□□□ -0.02
TRAFD1-207ENST00000550051 C8orf37Q96NL8 207 aa14.95□□□□□ -0.02
TRAFD1-207ENST00000550051 C1orf167Q5SNV9 1468 aa14.95□□□□□ -0.02
TRAFD1-207ENST00000550051 SOS2Q07890 1332 aaPredicted RBP14.94□□□□□ -0.02
TRAFD1-207ENST00000550051 NAIPQ13075 1403 aa14.93□□□□□ -0.02
TRAFD1-207ENST00000550051 PRAG1Q86YV5 1406 aa14.93□□□□□ -0.02
TRAFD1-207ENST00000550051 NGLY1Q96IV0 654 aa14.93□□□□□ -0.02
TRAFD1-207ENST00000550051 PTCH1Q13635 1447 aa14.92□□□□□ -0.02
TRAFD1-207ENST00000550051 ORAI2Q96SN7 254 aa14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 133.9 ms