RNA–Protein interactions for RNA: ENST00000547208.5

BEST3-208, Transcript of bestrophin 3, humanhuman

TSL 5

Gene BEST3, Length 1,187 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3-208ENST00000547208 ITGAEP38570 1179 aa15.8■□□□□ 0.12
BEST3-208ENST00000547208 SPHKAPQ2M3C7 1700 aa15.78■□□□□ 0.12
BEST3-208ENST00000547208 TXNDC2Q86VQ3 553 aa15.77■□□□□ 0.12
BEST3-208ENST00000547208 SLC52A1Q9NWF4 448 aa15.77■□□□□ 0.12
BEST3-208ENST00000547208 LRRC7Q96NW7 1537 aa15.77■□□□□ 0.11
BEST3-208ENST00000547208 ZFYVE9O95405 1425 aa15.75■□□□□ 0.11
BEST3-208ENST00000547208 NUP155O75694 1391 aa15.75■□□□□ 0.11
BEST3-208ENST00000547208 STAG3Q9UJ98 1225 aa15.74■□□□□ 0.11
BEST3-208ENST00000547208 EID1Q9Y6B2 187 aa15.74■□□□□ 0.11
BEST3-208ENST00000547208 NAIPQ13075 1403 aa15.74■□□□□ 0.11
BEST3-208ENST00000547208 RGS17Q9UGC6 210 aaPredicted RBP15.73■□□□□ 0.11
BEST3-208ENST00000547208 NWD1Q149M9 1564 aa15.71■□□□□ 0.11
BEST3-208ENST00000547208 CHD2O14647 1828 aaKnown RBP15.71■□□□□ 0.11
BEST3-208ENST00000547208 TOM1O60784 492 aa15.7■□□□□ 0.1
BEST3-208ENST00000547208 HFM1A2PYH4 1435 aa15.69■□□□□ 0.1
BEST3-208ENST00000547208 RIMS2Q9UQ26 1411 aa15.68■□□□□ 0.1
BEST3-208ENST00000547208 CLTCL1P53675 1640 aa15.67■□□□□ 0.1
BEST3-208ENST00000547208 PLEKHG1Q9ULL1 1385 aa15.66■□□□□ 0.1
BEST3-208ENST00000547208 TRPM2O94759 1503 aa15.66■□□□□ 0.1
BEST3-208ENST00000547208 KIF1BO60333 1816 aa15.66■□□□□ 0.1
BEST3-208ENST00000547208 SLC26A8Q96RN1 970 aa15.65■□□□□ 0.1
BEST3-208ENST00000547208 NRXN3Q9Y4C0 1643 aa15.65■□□□□ 0.1
BEST3-208ENST00000547208 NKTRP30414 1462 aaKnown RBP15.64■□□□□ 0.09
BEST3-208ENST00000547208 DIP2AQ14689 1571 aa15.63■□□□□ 0.09
BEST3-208ENST00000547208 ADAMTS13Q76LX8 1427 aa15.62■□□□□ 0.09
BEST3-208ENST00000547208 KCNA6P17658 529 aa15.62■□□□□ 0.09
BEST3-208ENST00000547208 CHGAP10645 457 aaKnown RBP15.6■□□□□ 0.09
BEST3-208ENST00000547208 RBM33Q96EV2 1170 aaKnown RBP15.6■□□□□ 0.09
BEST3-208ENST00000547208 NEXMIFQ5QGS0 1516 aa15.59■□□□□ 0.09
BEST3-208ENST00000547208 SETBP1Q9Y6X0 1596 aa15.59■□□□□ 0.09
BEST3-208ENST00000547208 POTEAQ6S8J7 498 aa15.59■□□□□ 0.09
BEST3-208ENST00000547208 TMEM94Q12767 1356 aa15.59■□□□□ 0.09
BEST3-208ENST00000547208 PPP1R15AO75807 674 aaPredicted RBP15.58■□□□□ 0.08
BEST3-208ENST00000547208 HDGFP51858 240 aaKnown RBP15.58■□□□□ 0.08
BEST3-208ENST00000547208 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.58■□□□□ 0.08
BEST3-208ENST00000547208 NUTM2DQ5VT03 806 aaPredicted RBP15.57■□□□□ 0.08
BEST3-208ENST00000547208 TBX22Q9Y458 520 aa15.57■□□□□ 0.08
BEST3-208ENST00000547208 XRN1Q8IZH2 1706 aaKnown RBP15.57■□□□□ 0.08
BEST3-208ENST00000547208 BCANQ96GW7 911 aa15.56■□□□□ 0.08
BEST3-208ENST00000547208 ROBO1Q9Y6N7 1651 aa15.56■□□□□ 0.08
BEST3-208ENST00000547208 SETD1AO15047 1707 aaKnown RBP15.56■□□□□ 0.08
BEST3-208ENST00000547208 PPLO60437 1756 aa15.56■□□□□ 0.08
BEST3-208ENST00000547208 PROSER2Q86WR7 435 aaPredicted RBP15.54■□□□□ 0.08
BEST3-208ENST00000547208 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.54■□□□□ 0.08
BEST3-208ENST00000547208 PIK3R4Q99570 1358 aa15.53■□□□□ 0.08
BEST3-208ENST00000547208 TRIM52Q96A61 297 aa15.53■□□□□ 0.08
BEST3-208ENST00000547208 PTPRUQ92729 1446 aa15.52■□□□□ 0.08
BEST3-208ENST00000547208 IFT172Q9UG01 1749 aa15.51■□□□□ 0.07
BEST3-208ENST00000547208 SLC4A1APQ9BWU0 796 aaKnown RBP15.51■□□□□ 0.07
BEST3-208ENST00000547208 FAM135BQ49AJ0 1406 aa15.51■□□□□ 0.07
BEST3-208ENST00000547208 NCOA3Q9Y6Q9 1424 aa15.5■□□□□ 0.07
BEST3-208ENST00000547208 MSH6P52701 1360 aa15.49■□□□□ 0.07
BEST3-208ENST00000547208 ZNF326Q5BKZ1 582 aaKnown RBP15.48■□□□□ 0.07
BEST3-208ENST00000547208 METP08581 1390 aa15.47■□□□□ 0.07
BEST3-208ENST00000547208 PHLPP1O60346 1717 aa15.46■□□□□ 0.07
BEST3-208ENST00000547208 NALCNQ8IZF0 1738 aa15.46■□□□□ 0.07
BEST3-208ENST00000547208 AMOTL2Q9Y2J4 779 aa15.45■□□□□ 0.06
BEST3-208ENST00000547208 SETD5Q9C0A6 1442 aa15.44■□□□□ 0.06
BEST3-208ENST00000547208 SPATA31E1Q6ZUB1 1445 aa15.43■□□□□ 0.06
BEST3-208ENST00000547208 MPHOSPH9Q99550 1183 aa15.43■□□□□ 0.06
BEST3-208ENST00000547208 COL16A1Q07092 1604 aaPredicted RBP15.43■□□□□ 0.06
BEST3-208ENST00000547208 SLAIN2Q9P270 581 aa15.42■□□□□ 0.06
BEST3-208ENST00000547208 CCDC144AA2RUR9 1427 aa15.42■□□□□ 0.06
BEST3-208ENST00000547208 RPGRIP1LQ68CZ1 1315 aa15.42■□□□□ 0.06
BEST3-208ENST00000547208 PRAG1Q86YV5 1406 aa15.41■□□□□ 0.06
BEST3-208ENST00000547208 RAB3GAP2Q9H2M9 1393 aa15.4■□□□□ 0.06
BEST3-208ENST00000547208 C19orf44Q9H6X5 657 aa15.4■□□□□ 0.06
BEST3-208ENST00000547208 DCCP43146 1447 aa15.4■□□□□ 0.06
BEST3-208ENST00000547208 AHDC1Q5TGY3 1603 aaPredicted RBP15.39■□□□□ 0.05
BEST3-208ENST00000547208 VGFO15240 615 aaPredicted RBP15.39■□□□□ 0.05
BEST3-208ENST00000547208 PTCH1Q13635 1447 aa15.38■□□□□ 0.05
BEST3-208ENST00000547208 PPP4R3CPQ6ZMV5 832 aa15.38■□□□□ 0.05
BEST3-208ENST00000547208 NHSL1Q5SYE7 1610 aa15.38■□□□□ 0.05
BEST3-208ENST00000547208 ADGRL3Q9HAR2 1447 aa15.37■□□□□ 0.05
BEST3-208ENST00000547208 C14orf37Q86TY3 774 aa15.37■□□□□ 0.05
BEST3-208ENST00000547208 CADPS2Q86UW7 1296 aa15.37■□□□□ 0.05
BEST3-208ENST00000547208 ACIN1Q9UKV3 1341 aaKnown RBP15.37■□□□□ 0.05
BEST3-208ENST00000547208 KNDC1Q76NI1 1749 aa15.37■□□□□ 0.05
BEST3-208ENST00000547208 ASXL1Q8IXJ9 1541 aa15.36■□□□□ 0.05
BEST3-208ENST00000547208 MST1RQ04912 1400 aa15.35■□□□□ 0.05
BEST3-208ENST00000547208 SHPRHQ149N8 1683 aa15.35■□□□□ 0.05
BEST3-208ENST00000547208 ROBO2Q9HCK4 1378 aa15.35■□□□□ 0.05
BEST3-208ENST00000547208 ATF3P18847 181 aa15.34■□□□□ 0.05
BEST3-208ENST00000547208 LRP6O75581 1613 aa15.34■□□□□ 0.05
BEST3-208ENST00000547208 ADGRF5Q8IZF2 1346 aa15.34■□□□□ 0.05
BEST3-208ENST00000547208 ANKRD30BQ9BXX2 1392 aa15.33■□□□□ 0.04
BEST3-208ENST00000547208 PIK3C2GO75747 1445 aa15.33■□□□□ 0.04
BEST3-208ENST00000547208 LAMC1P11047 1609 aa15.32■□□□□ 0.04
BEST3-208ENST00000547208 RGL3Q3MIN7 710 aa15.32■□□□□ 0.04
BEST3-208ENST00000547208 NRXN1Q9ULB1 1477 aa15.32■□□□□ 0.04
BEST3-208ENST00000547208 BRINP3Q76B58 766 aa15.31■□□□□ 0.04
BEST3-208ENST00000547208 TECPR2O15040 1411 aa15.3■□□□□ 0.04
BEST3-208ENST00000547208 MYOM2P54296 1465 aa15.3■□□□□ 0.04
BEST3-208ENST00000547208 JCADQ9P266 1359 aa15.3■□□□□ 0.04
BEST3-208ENST00000547208 CDC42BPGQ6DT37 1551 aa15.29■□□□□ 0.04
BEST3-208ENST00000547208 UPF1Q92900 1129 aaKnown RBP eCLIP15.28■□□□□ 0.04
BEST3-208ENST00000547208 HRCP23327 699 aa15.27■□□□□ 0.04
BEST3-208ENST00000547208 C1orf167Q5SNV9 1468 aa15.27■□□□□ 0.03
BEST3-208ENST00000547208 LRPPRCP42704 1394 aaKnown RBP15.25■□□□□ 0.03
BEST3-208ENST00000547208 FMN2Q9NZ56 1722 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms