RNA–Protein interactions for RNA: ENST00000546073.5

CD9-211, Transcript of CD9 molecule, humanhuman

TSL 2

Gene CD9, Length 1,072 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD9-211ENST00000546073 RGL3Q3MIN7 710 aa25.47■■□□□ 1.67
CD9-211ENST00000546073 MED14O60244 1454 aa25.47■■□□□ 1.67
CD9-211ENST00000546073 TMEM131LA2VDJ0 1609 aa25.46■■□□□ 1.67
CD9-211ENST00000546073 NUTM2DQ5VT03 806 aaPredicted RBP25.46■■□□□ 1.67
CD9-211ENST00000546073 POLR1AO95602 1720 aaPredicted RBP25.45■■□□□ 1.66
CD9-211ENST00000546073 CLTCL1P53675 1640 aa25.43■■□□□ 1.66
CD9-211ENST00000546073 PLEKHG1Q9ULL1 1385 aa25.42■■□□□ 1.66
CD9-211ENST00000546073 SENP3Q9H4L4 574 aaPredicted RBP25.41■■□□□ 1.66
CD9-211ENST00000546073 KIF1BO60333 1816 aa25.4■■□□□ 1.66
CD9-211ENST00000546073 SLC26A8Q96RN1 970 aa25.4■■□□□ 1.66
CD9-211ENST00000546073 ANKRD30BQ9BXX2 1392 aa25.4■■□□□ 1.66
CD9-211ENST00000546073 ZFYVE9O95405 1425 aa25.39■■□□□ 1.66
CD9-211ENST00000546073 IQGAP1P46940 1657 aa25.38■■□□□ 1.65
CD9-211ENST00000546073 ZNF335Q9H4Z2 1342 aaPredicted RBP25.37■■□□□ 1.65
CD9-211ENST00000546073 NEURL4Q96JN8 1562 aa25.36■■□□□ 1.65
CD9-211ENST00000546073 TBX22Q9Y458 520 aa25.36■■□□□ 1.65
CD9-211ENST00000546073 CERKQ8TCT0 537 aa25.35■■□□□ 1.65
CD9-211ENST00000546073 STAC3Q96MF2 364 aa25.34■■□□□ 1.65
CD9-211ENST00000546073 KCNA6P17658 529 aa25.3■■□□□ 1.64
CD9-211ENST00000546073 MYO5BQ9ULV0 1848 aa25.29■■□□□ 1.64
CD9-211ENST00000546073 SPATA31E1Q6ZUB1 1445 aa25.28■■□□□ 1.64
CD9-211ENST00000546073 NEUROD1Q13562 356 aa25.27■■□□□ 1.64
CD9-211ENST00000546073 CPS1P31327 1500 aa25.27■■□□□ 1.64
CD9-211ENST00000546073 DCAF11Q8TEB1 546 aa25.26■■□□□ 1.63
CD9-211ENST00000546073 DHX57Q6P158 1386 aaKnown RBP25.26■■□□□ 1.63
CD9-211ENST00000546073 KDM2AQ9Y2K7 1162 aa25.25■■□□□ 1.63
CD9-211ENST00000546073 PIK3R4Q99570 1358 aa25.25■■□□□ 1.63
CD9-211ENST00000546073 NEXMIFQ5QGS0 1516 aa25.25■■□□□ 1.63
CD9-211ENST00000546073 PROSER2Q86WR7 435 aaPredicted RBP25.24■■□□□ 1.63
CD9-211ENST00000546073 DIP2AQ14689 1571 aa25.22■■□□□ 1.63
CD9-211ENST00000546073 C14orf37Q86TY3 774 aa25.2■■□□□ 1.62
CD9-211ENST00000546073 AMOTL2Q9Y2J4 779 aa25.2■■□□□ 1.62
CD9-211ENST00000546073 ADGRF5Q8IZF2 1346 aa25.19■■□□□ 1.62
CD9-211ENST00000546073 ADAMTS13Q76LX8 1427 aa25.18■■□□□ 1.62
CD9-211ENST00000546073 SETBP1Q9Y6X0 1596 aa25.17■■□□□ 1.62
CD9-211ENST00000546073 LTBP4Q8N2S1 1624 aa25.16■■□□□ 1.62
CD9-211ENST00000546073 TOM1O60784 492 aa25.16■■□□□ 1.62
CD9-211ENST00000546073 SIN3AQ96ST3 1273 aa25.16■■□□□ 1.62
CD9-211ENST00000546073 IQSEC2Q5JU85 1478 aa25.15■■□□□ 1.62
CD9-211ENST00000546073 CCER1Q8TC90 406 aaPredicted RBP25.15■■□□□ 1.62
CD9-211ENST00000546073 FBXO41Q8TF61 875 aa25.15■■□□□ 1.62
CD9-211ENST00000546073 UBAP1LF5GYI3 381 aa25.13■■□□□ 1.61
CD9-211ENST00000546073 TONSLQ96HA7 1378 aa25.12■■□□□ 1.61
CD9-211ENST00000546073 MYOM2P54296 1465 aa25.12■■□□□ 1.61
CD9-211ENST00000546073 PPLO60437 1756 aa25.12■■□□□ 1.61
CD9-211ENST00000546073 NKTRP30414 1462 aaKnown RBP25.11■■□□□ 1.61
CD9-211ENST00000546073 C14orf93Q9H972 538 aaKnown RBP25.1■■□□□ 1.61
CD9-211ENST00000546073 CLSPNQ9HAW4 1339 aa25.1■■□□□ 1.61
CD9-211ENST00000546073 METP08581 1390 aa25.09■■□□□ 1.61
CD9-211ENST00000546073 TMEM94Q12767 1356 aa25.08■■□□□ 1.61
CD9-211ENST00000546073 SCAF1Q9H7N4 1312 aaKnown RBP25.08■■□□□ 1.6
CD9-211ENST00000546073 MSH6P52701 1360 aa25.07■■□□□ 1.6
CD9-211ENST00000546073 PIK3C2GO75747 1445 aa25.07■■□□□ 1.6
CD9-211ENST00000546073 CFAP70Q5T0N1 1121 aa25.07■■□□□ 1.6
CD9-211ENST00000546073 STK26Q9P289 416 aa25.07■■□□□ 1.6
CD9-211ENST00000546073 ALKQ9UM73 1620 aa25.07■■□□□ 1.6
CD9-211ENST00000546073 LRRC7Q96NW7 1537 aa25.07■■□□□ 1.6
CD9-211ENST00000546073 L3MBTL2Q969R5 705 aa25.06■■□□□ 1.6
CD9-211ENST00000546073 NCOA3Q9Y6Q9 1424 aa25.04■■□□□ 1.6
CD9-211ENST00000546073 ATF3P18847 181 aa25.04■■□□□ 1.6
CD9-211ENST00000546073 TMEM132EQ6IEE7 984 aa25.03■■□□□ 1.6
CD9-211ENST00000546073 NWD1Q149M9 1564 aa25.02■■□□□ 1.6
CD9-211ENST00000546073 RBM33Q96EV2 1170 aaKnown RBP25.02■■□□□ 1.6
CD9-211ENST00000546073 C19orf44Q9H6X5 657 aa25.01■■□□□ 1.59
CD9-211ENST00000546073 NRXN3Q9Y4C0 1643 aa25.01■■□□□ 1.59
CD9-211ENST00000546073 IFT172Q9UG01 1749 aa25■■□□□ 1.59
CD9-211ENST00000546073 NRXN1Q9ULB1 1477 aa25■■□□□ 1.59
CD9-211ENST00000546073 CHD2O14647 1828 aaKnown RBP25■■□□□ 1.59
CD9-211ENST00000546073 LRPPRCP42704 1394 aaKnown RBP24.99■■□□□ 1.59
CD9-211ENST00000546073 PIP4K2BP78356 416 aa24.99■■□□□ 1.59
CD9-211ENST00000546073 CADPS2Q86UW7 1296 aa24.99■■□□□ 1.59
CD9-211ENST00000546073 PTPRUQ92729 1446 aa24.99■■□□□ 1.59
CD9-211ENST00000546073 POGKQ9P215 609 aa24.99■■□□□ 1.59
CD9-211ENST00000546073 TIMELESSQ9UNS1 1208 aa24.97■■□□□ 1.59
CD9-211ENST00000546073 LAMC1P11047 1609 aa24.97■■□□□ 1.59
CD9-211ENST00000546073 ABCC11Q96J66 1382 aa24.96■■□□□ 1.59
CD9-211ENST00000546073 YTHDC2Q9H6S0 1430 aaKnown RBP24.95■■□□□ 1.58
CD9-211ENST00000546073 SIRT1Q96EB6 747 aa24.94■■□□□ 1.58
CD9-211ENST00000546073 STRCP1A6NGW2 1772 aa24.94■■□□□ 1.58
CD9-211ENST00000546073 PTCH1Q13635 1447 aa24.94■■□□□ 1.58
CD9-211ENST00000546073 ILDR1Q86SU0 546 aaPredicted RBP24.93■■□□□ 1.58
CD9-211ENST00000546073 TRAK1Q9UPV9 953 aa24.92■■□□□ 1.58
CD9-211ENST00000546073 PRAG1Q86YV5 1406 aa24.91■■□□□ 1.58
CD9-211ENST00000546073 ROBO2Q9HCK4 1378 aa24.9■■□□□ 1.58
CD9-211ENST00000546073 SLAIN2Q9P270 581 aa24.89■■□□□ 1.58
CD9-211ENST00000546073 XRN1Q8IZH2 1706 aaKnown RBP24.88■■□□□ 1.57
CD9-211ENST00000546073 WAPLQ7Z5K2 1190 aa24.87■■□□□ 1.57
CD9-211ENST00000546073 PRAM1Q96QH2 718 aa24.87■■□□□ 1.57
CD9-211ENST00000546073 TECPR2O15040 1411 aa24.86■■□□□ 1.57
CD9-211ENST00000546073 ROCK2O75116 1388 aaKnown RBP24.86■■□□□ 1.57
CD9-211ENST00000546073 FAM135BQ49AJ0 1406 aa24.86■■□□□ 1.57
CD9-211ENST00000546073 DCCP43146 1447 aa24.85■■□□□ 1.57
CD9-211ENST00000546073 SAFB2Q14151 953 aaKnown RBP eCLIP24.84■■□□□ 1.57
CD9-211ENST00000546073 ADGRL3Q9HAR2 1447 aa24.84■■□□□ 1.57
CD9-211ENST00000546073 SETD1AO15047 1707 aaKnown RBP24.83■■□□□ 1.57
CD9-211ENST00000546073 NBPF1Q3BBV0 1214 aa24.82■■□□□ 1.56
CD9-211ENST00000546073 CARD11Q9BXL7 1154 aa24.8■■□□□ 1.56
CD9-211ENST00000546073 EIF3AQ14152 1382 aaKnown RBP24.79■■□□□ 1.56
CD9-211ENST00000546073 KIAA1210Q9ULL0 1709 aa24.78■■□□□ 1.56
CD9-211ENST00000546073 ASXL1Q8IXJ9 1541 aa24.77■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms