RNA–Protein interactions for RNA: ENST00000544996.1

CCDC78-216, Transcript of coiled-coil domain containing 78, humanhuman

TSL 4

Gene CCDC78, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC78-216ENST00000544996 ZFYVE9O95405 1425 aa23.41■■□□□ 1.34
CCDC78-216ENST00000544996 SPHKAPQ2M3C7 1700 aa23.4■■□□□ 1.34
CCDC78-216ENST00000544996 SLC26A8Q96RN1 970 aa23.38■■□□□ 1.33
CCDC78-216ENST00000544996 ZNF326Q5BKZ1 582 aaKnown RBP23.37■■□□□ 1.33
CCDC78-216ENST00000544996 MPHOSPH9Q99550 1183 aa23.37■■□□□ 1.33
CCDC78-216ENST00000544996 TRPM2O94759 1503 aa23.37■■□□□ 1.33
CCDC78-216ENST00000544996 PLEKHG1Q9ULL1 1385 aa23.36■■□□□ 1.33
CCDC78-216ENST00000544996 NUTM2DQ5VT03 806 aaPredicted RBP23.34■■□□□ 1.33
CCDC78-216ENST00000544996 RAB3GAP2Q9H2M9 1393 aa23.34■■□□□ 1.33
CCDC78-216ENST00000544996 UBAP1LF5GYI3 381 aa23.33■■□□□ 1.33
CCDC78-216ENST00000544996 SENP3Q9H4L4 574 aaPredicted RBP23.33■■□□□ 1.33
CCDC78-216ENST00000544996 MYO5BQ9ULV0 1848 aa23.33■■□□□ 1.32
CCDC78-216ENST00000544996 FOXD1Q16676 465 aa23.32■■□□□ 1.32
CCDC78-216ENST00000544996 CLTCL1P53675 1640 aa23.3■■□□□ 1.32
CCDC78-216ENST00000544996 KCNA6P17658 529 aa23.3■■□□□ 1.32
CCDC78-216ENST00000544996 TBX22Q9Y458 520 aa23.29■■□□□ 1.32
CCDC78-216ENST00000544996 LRRC7Q96NW7 1537 aa23.28■■□□□ 1.32
CCDC78-216ENST00000544996 TOM1O60784 492 aa23.27■■□□□ 1.32
CCDC78-216ENST00000544996 CCDC144AA2RUR9 1427 aa23.25■■□□□ 1.31
CCDC78-216ENST00000544996 HRCP23327 699 aa23.25■■□□□ 1.31
CCDC78-216ENST00000544996 STRCP1A6NGW2 1772 aa23.24■■□□□ 1.31
CCDC78-216ENST00000544996 RPGRIP1LQ68CZ1 1315 aa23.23■■□□□ 1.31
CCDC78-216ENST00000544996 PROSER2Q86WR7 435 aaPredicted RBP23.22■■□□□ 1.31
CCDC78-216ENST00000544996 ADAMTS13Q76LX8 1427 aa23.22■■□□□ 1.31
CCDC78-216ENST00000544996 KIF1BO60333 1816 aa23.22■■□□□ 1.31
CCDC78-216ENST00000544996 VGFO15240 615 aaPredicted RBP23.21■■□□□ 1.31
CCDC78-216ENST00000544996 SCAF1Q9H7N4 1312 aaKnown RBP23.2■■□□□ 1.3
CCDC78-216ENST00000544996 DIP2AQ14689 1571 aa23.19■■□□□ 1.3
CCDC78-216ENST00000544996 NKTRP30414 1462 aaKnown RBP23.19■■□□□ 1.3
CCDC78-216ENST00000544996 PIK3R4Q99570 1358 aa23.19■■□□□ 1.3
CCDC78-216ENST00000544996 PIP4K2BP78356 416 aa23.19■■□□□ 1.3
CCDC78-216ENST00000544996 TMEM94Q12767 1356 aa23.18■■□□□ 1.3
CCDC78-216ENST00000544996 NEXMIFQ5QGS0 1516 aa23.18■■□□□ 1.3
CCDC78-216ENST00000544996 NWD1Q149M9 1564 aa23.17■■□□□ 1.3
CCDC78-216ENST00000544996 SETBP1Q9Y6X0 1596 aa23.15■■□□□ 1.3
CCDC78-216ENST00000544996 RGL3Q3MIN7 710 aa23.15■■□□□ 1.3
CCDC78-216ENST00000544996 RBM33Q96EV2 1170 aaKnown RBP23.13■■□□□ 1.29
CCDC78-216ENST00000544996 AMOTL2Q9Y2J4 779 aa23.13■■□□□ 1.29
CCDC78-216ENST00000544996 SPATA31E1Q6ZUB1 1445 aa23.11■■□□□ 1.29
CCDC78-216ENST00000544996 CHD2O14647 1828 aaKnown RBP23.1■■□□□ 1.29
CCDC78-216ENST00000544996 C14orf37Q86TY3 774 aa23.09■■□□□ 1.29
CCDC78-216ENST00000544996 MSH6P52701 1360 aa23.09■■□□□ 1.29
CCDC78-216ENST00000544996 ANKRD30BQ9BXX2 1392 aa23.09■■□□□ 1.29
CCDC78-216ENST00000544996 NRXN3Q9Y4C0 1643 aa23.08■■□□□ 1.29
CCDC78-216ENST00000544996 METP08581 1390 aa23.08■■□□□ 1.29
CCDC78-216ENST00000544996 NCOA3Q9Y6Q9 1424 aa23.07■■□□□ 1.28
CCDC78-216ENST00000544996 PTPRUQ92729 1446 aa23.06■■□□□ 1.28
CCDC78-216ENST00000544996 ALKQ9UM73 1620 aa23.04■■□□□ 1.28
CCDC78-216ENST00000544996 XIRP1Q702N8 1843 aaKnown RBP23.04■■□□□ 1.28
CCDC78-216ENST00000544996 HSPA1LP34931 641 aa23.03■■□□□ 1.28
CCDC78-216ENST00000544996 PPLO60437 1756 aa23.03■■□□□ 1.28
CCDC78-216ENST00000544996 ADGRF5Q8IZF2 1346 aa23.03■■□□□ 1.28
CCDC78-216ENST00000544996 C19orf44Q9H6X5 657 aa23.02■■□□□ 1.28
CCDC78-216ENST00000544996 ATF3P18847 181 aa22.99■■□□□ 1.27
CCDC78-216ENST00000544996 CADPS2Q86UW7 1296 aa22.98■■□□□ 1.27
CCDC78-216ENST00000544996 SLAIN2Q9P270 581 aa22.98■■□□□ 1.27
CCDC78-216ENST00000544996 XRN1Q8IZH2 1706 aaKnown RBP22.97■■□□□ 1.27
CCDC78-216ENST00000544996 FAM135BQ49AJ0 1406 aa22.97■■□□□ 1.27
CCDC78-216ENST00000544996 TRIM26Q12899 539 aaPredicted RBP22.95■■□□□ 1.26
CCDC78-216ENST00000544996 PIK3C2GO75747 1445 aa22.94■■□□□ 1.26
CCDC78-216ENST00000544996 IFT172Q9UG01 1749 aa22.93■■□□□ 1.26
CCDC78-216ENST00000544996 MYOM2P54296 1465 aa22.92■■□□□ 1.26
CCDC78-216ENST00000544996 PTCH1Q13635 1447 aa22.91■■□□□ 1.26
CCDC78-216ENST00000544996 STAC3Q96MF2 364 aa22.91■■□□□ 1.26
CCDC78-216ENST00000544996 SETD1AO15047 1707 aaKnown RBP22.91■■□□□ 1.26
CCDC78-216ENST00000544996 DCAF11Q8TEB1 546 aa22.9■■□□□ 1.26
CCDC78-216ENST00000544996 C14orf93Q9H972 538 aaKnown RBP22.9■■□□□ 1.26
CCDC78-216ENST00000544996 DCCP43146 1447 aa22.9■■□□□ 1.26
CCDC78-216ENST00000544996 ROBO2Q9HCK4 1378 aa22.89■■□□□ 1.26
CCDC78-216ENST00000544996 PRAG1Q86YV5 1406 aa22.89■■□□□ 1.25
CCDC78-216ENST00000544996 NRXN1Q9ULB1 1477 aa22.88■■□□□ 1.25
CCDC78-216ENST00000544996 TMEM132EQ6IEE7 984 aa22.88■■□□□ 1.25
CCDC78-216ENST00000544996 STK26Q9P289 416 aa22.88■■□□□ 1.25
CCDC78-216ENST00000544996 KDM2AQ9Y2K7 1162 aa22.88■■□□□ 1.25
CCDC78-216ENST00000544996 ADGRL3Q9HAR2 1447 aa22.88■■□□□ 1.25
CCDC78-216ENST00000544996 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.88■■□□□ 1.25
CCDC78-216ENST00000544996 CFAP70Q5T0N1 1121 aa22.86■■□□□ 1.25
CCDC78-216ENST00000544996 LRPPRCP42704 1394 aaKnown RBP22.86■■□□□ 1.25
CCDC78-216ENST00000544996 ROBO1Q9Y6N7 1651 aa22.85■■□□□ 1.25
CCDC78-216ENST00000544996 ABCC11Q96J66 1382 aa22.85■■□□□ 1.25
CCDC78-216ENST00000544996 DHX57Q6P158 1386 aaKnown RBP22.83■■□□□ 1.25
CCDC78-216ENST00000544996 DISP3Q9P2K9 1392 aa22.83■■□□□ 1.25
CCDC78-216ENST00000544996 TECPR2O15040 1411 aa22.82■■□□□ 1.24
CCDC78-216ENST00000544996 YTHDC2Q9H6S0 1430 aaKnown RBP22.82■■□□□ 1.24
CCDC78-216ENST00000544996 LAMC1P11047 1609 aa22.79■■□□□ 1.24
CCDC78-216ENST00000544996 ASXL1Q8IXJ9 1541 aa22.79■■□□□ 1.24
CCDC78-216ENST00000544996 MST1RQ04912 1400 aa22.78■■□□□ 1.24
CCDC78-216ENST00000544996 BRINP3Q76B58 766 aa22.78■■□□□ 1.24
CCDC78-216ENST00000544996 WAPLQ7Z5K2 1190 aa22.78■■□□□ 1.24
CCDC78-216ENST00000544996 SIRT1Q96EB6 747 aa22.78■■□□□ 1.24
CCDC78-216ENST00000544996 NALCNQ8IZF0 1738 aa22.77■■□□□ 1.23
CCDC78-216ENST00000544996 PLEKHH1Q9ULM0 1364 aa22.73■■□□□ 1.23
CCDC78-216ENST00000544996 KNDC1Q76NI1 1749 aa22.72■■□□□ 1.23
CCDC78-216ENST00000544996 NEUROD1Q13562 356 aa22.72■■□□□ 1.23
CCDC78-216ENST00000544996 SIN3AQ96ST3 1273 aa22.72■■□□□ 1.23
CCDC78-216ENST00000544996 C1orf167Q5SNV9 1468 aa22.72■■□□□ 1.23
CCDC78-216ENST00000544996 PRAM1Q96QH2 718 aa22.71■■□□□ 1.23
CCDC78-216ENST00000544996 POGKQ9P215 609 aa22.71■■□□□ 1.23
CCDC78-216ENST00000544996 PHLPP1O60346 1717 aa22.71■■□□□ 1.23
CCDC78-216ENST00000544996 ADGRB1O14514 1584 aa22.69■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms