RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 TMEM131LA2VDJ0 1609 aa17.65■□□□□ 0.42
HDAC4-216ENST00000544989 HSPA1LP34931 641 aa17.64■□□□□ 0.41
HDAC4-216ENST00000544989 ZFYVE9O95405 1425 aa17.64■□□□□ 0.41
HDAC4-216ENST00000544989 RIMS2Q9UQ26 1411 aa17.64■□□□□ 0.41
HDAC4-216ENST00000544989 ALKQ9UM73 1620 aa17.63■□□□□ 0.41
HDAC4-216ENST00000544989 SLC4A1APQ9BWU0 796 aaKnown RBP17.63■□□□□ 0.41
HDAC4-216ENST00000544989 SPHKAPQ2M3C7 1700 aa17.63■□□□□ 0.41
HDAC4-216ENST00000544989 PLEKHG1Q9ULL1 1385 aa17.62■□□□□ 0.41
HDAC4-216ENST00000544989 TOM1O60784 492 aa17.61■□□□□ 0.41
HDAC4-216ENST00000544989 BCANQ96GW7 911 aa17.61■□□□□ 0.41
HDAC4-216ENST00000544989 TRPM2O94759 1503 aa17.61■□□□□ 0.41
HDAC4-216ENST00000544989 SETD5Q9C0A6 1442 aa17.59■□□□□ 0.41
HDAC4-216ENST00000544989 MYO5BQ9ULV0 1848 aa17.58■□□□□ 0.4
HDAC4-216ENST00000544989 KCNA6P17658 529 aa17.57■□□□□ 0.4
HDAC4-216ENST00000544989 ZNF326Q5BKZ1 582 aaKnown RBP17.56■□□□□ 0.4
HDAC4-216ENST00000544989 TBX22Q9Y458 520 aa17.56■□□□□ 0.4
HDAC4-216ENST00000544989 LRRC7Q96NW7 1537 aa17.56■□□□□ 0.4
HDAC4-216ENST00000544989 SLC26A8Q96RN1 970 aa17.55■□□□□ 0.4
HDAC4-216ENST00000544989 DIP2AQ14689 1571 aa17.54■□□□□ 0.4
HDAC4-216ENST00000544989 NKTRP30414 1462 aaKnown RBP17.53■□□□□ 0.4
HDAC4-216ENST00000544989 MPHOSPH9Q99550 1183 aa17.53■□□□□ 0.4
HDAC4-216ENST00000544989 PIK3R4Q99570 1358 aa17.53■□□□□ 0.4
HDAC4-216ENST00000544989 CLTCL1P53675 1640 aa17.52■□□□□ 0.4
HDAC4-216ENST00000544989 STRCP1A6NGW2 1772 aa17.52■□□□□ 0.4
HDAC4-216ENST00000544989 KIF1BO60333 1816 aa17.51■□□□□ 0.39
HDAC4-216ENST00000544989 RPGRIP1LQ68CZ1 1315 aa17.51■□□□□ 0.39
HDAC4-216ENST00000544989 HRCP23327 699 aa17.51■□□□□ 0.39
HDAC4-216ENST00000544989 NWD1Q149M9 1564 aa17.5■□□□□ 0.39
HDAC4-216ENST00000544989 CCDC144AA2RUR9 1427 aa17.49■□□□□ 0.39
HDAC4-216ENST00000544989 PIP4K2BP78356 416 aa17.49■□□□□ 0.39
HDAC4-216ENST00000544989 PROSER2Q86WR7 435 aaPredicted RBP17.49■□□□□ 0.39
HDAC4-216ENST00000544989 RAB3GAP2Q9H2M9 1393 aa17.49■□□□□ 0.39
HDAC4-216ENST00000544989 VGFO15240 615 aaPredicted RBP17.48■□□□□ 0.39
HDAC4-216ENST00000544989 NUTM2DQ5VT03 806 aaPredicted RBP17.48■□□□□ 0.39
HDAC4-216ENST00000544989 ADAMTS13Q76LX8 1427 aa17.47■□□□□ 0.39
HDAC4-216ENST00000544989 NCOA3Q9Y6Q9 1424 aa17.47■□□□□ 0.39
HDAC4-216ENST00000544989 SCAF1Q9H7N4 1312 aaKnown RBP17.47■□□□□ 0.39
HDAC4-216ENST00000544989 SETBP1Q9Y6X0 1596 aa17.46■□□□□ 0.39
HDAC4-216ENST00000544989 TMEM94Q12767 1356 aa17.46■□□□□ 0.39
HDAC4-216ENST00000544989 NEXMIFQ5QGS0 1516 aa17.45■□□□□ 0.38
HDAC4-216ENST00000544989 CHD2O14647 1828 aaKnown RBP17.44■□□□□ 0.38
HDAC4-216ENST00000544989 RGS17Q9UGC6 210 aaPredicted RBP17.44■□□□□ 0.38
HDAC4-216ENST00000544989 FOXD1Q16676 465 aa17.43■□□□□ 0.38
HDAC4-216ENST00000544989 PHF23Q9BUL5 403 aaPredicted RBP17.43■□□□□ 0.38
HDAC4-216ENST00000544989 MSH6P52701 1360 aa17.42■□□□□ 0.38
HDAC4-216ENST00000544989 SENP3Q9H4L4 574 aaPredicted RBP17.42■□□□□ 0.38
HDAC4-216ENST00000544989 AMOTL2Q9Y2J4 779 aa17.4■□□□□ 0.38
HDAC4-216ENST00000544989 ANKRD30BQ9BXX2 1392 aa17.4■□□□□ 0.38
HDAC4-216ENST00000544989 XIRP1Q702N8 1843 aaKnown RBP17.39■□□□□ 0.37
HDAC4-216ENST00000544989 NRXN3Q9Y4C0 1643 aa17.38■□□□□ 0.37
HDAC4-216ENST00000544989 SPATA31E1Q6ZUB1 1445 aa17.38■□□□□ 0.37
HDAC4-216ENST00000544989 C14orf37Q86TY3 774 aa17.37■□□□□ 0.37
HDAC4-216ENST00000544989 FAM135BQ49AJ0 1406 aa17.37■□□□□ 0.37
HDAC4-216ENST00000544989 PPLO60437 1756 aa17.35■□□□□ 0.37
HDAC4-216ENST00000544989 RGL3Q3MIN7 710 aa17.35■□□□□ 0.37
HDAC4-216ENST00000544989 C19orf44Q9H6X5 657 aa17.35■□□□□ 0.37
HDAC4-216ENST00000544989 METP08581 1390 aa17.35■□□□□ 0.37
HDAC4-216ENST00000544989 CADPS2Q86UW7 1296 aa17.34■□□□□ 0.37
HDAC4-216ENST00000544989 PTPRUQ92729 1446 aa17.34■□□□□ 0.37
HDAC4-216ENST00000544989 RBM33Q96EV2 1170 aaKnown RBP17.33■□□□□ 0.36
HDAC4-216ENST00000544989 XRN1Q8IZH2 1706 aaKnown RBP17.33■□□□□ 0.36
HDAC4-216ENST00000544989 ATF3P18847 181 aa17.32■□□□□ 0.36
HDAC4-216ENST00000544989 SLAIN2Q9P270 581 aa17.32■□□□□ 0.36
HDAC4-216ENST00000544989 DCCP43146 1447 aa17.31■□□□□ 0.36
HDAC4-216ENST00000544989 PTCH1Q13635 1447 aa17.3■□□□□ 0.36
HDAC4-216ENST00000544989 STAC3Q96MF2 364 aa17.3■□□□□ 0.36
HDAC4-216ENST00000544989 PRAG1Q86YV5 1406 aa17.3■□□□□ 0.36
HDAC4-216ENST00000544989 ADGRF5Q8IZF2 1346 aa17.28■□□□□ 0.36
HDAC4-216ENST00000544989 PIK3C2GO75747 1445 aa17.27■□□□□ 0.35
HDAC4-216ENST00000544989 IFT172Q9UG01 1749 aa17.27■□□□□ 0.35
HDAC4-216ENST00000544989 MYOM2P54296 1465 aa17.26■□□□□ 0.35
HDAC4-216ENST00000544989 SETD1AO15047 1707 aaKnown RBP17.26■□□□□ 0.35
HDAC4-216ENST00000544989 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.25■□□□□ 0.35
HDAC4-216ENST00000544989 ADGRL3Q9HAR2 1447 aa17.25■□□□□ 0.35
HDAC4-216ENST00000544989 POTEAQ6S8J7 498 aa17.25■□□□□ 0.35
HDAC4-216ENST00000544989 ROBO1Q9Y6N7 1651 aa17.25■□□□□ 0.35
HDAC4-216ENST00000544989 SRCAPQ6ZRS2 3230 aa17.23■□□□□ 0.35
HDAC4-216ENST00000544989 NRXN1Q9ULB1 1477 aa17.23■□□□□ 0.35
HDAC4-216ENST00000544989 C14orf93Q9H972 538 aaKnown RBP17.22■□□□□ 0.35
HDAC4-216ENST00000544989 LRPPRCP42704 1394 aaKnown RBP17.22■□□□□ 0.35
HDAC4-216ENST00000544989 ABCC11Q96J66 1382 aa17.21■□□□□ 0.35
HDAC4-216ENST00000544989 ROBO2Q9HCK4 1378 aa17.21■□□□□ 0.35
HDAC4-216ENST00000544989 LAMC1P11047 1609 aa17.21■□□□□ 0.35
HDAC4-216ENST00000544989 TECPR2O15040 1411 aa17.21■□□□□ 0.34
HDAC4-216ENST00000544989 SIRT1Q96EB6 747 aa17.19■□□□□ 0.34
HDAC4-216ENST00000544989 DHX57Q6P158 1386 aaKnown RBP17.18■□□□□ 0.34
HDAC4-216ENST00000544989 MST1RQ04912 1400 aa17.17■□□□□ 0.34
HDAC4-216ENST00000544989 DCAF11Q8TEB1 546 aa17.17■□□□□ 0.34
HDAC4-216ENST00000544989 YTHDC2Q9H6S0 1430 aaKnown RBP17.17■□□□□ 0.34
HDAC4-216ENST00000544989 BRINP3Q76B58 766 aa17.16■□□□□ 0.34
HDAC4-216ENST00000544989 STK26Q9P289 416 aa17.16■□□□□ 0.34
HDAC4-216ENST00000544989 AHDC1Q5TGY3 1603 aaPredicted RBP17.15■□□□□ 0.34
HDAC4-216ENST00000544989 TMEM132EQ6IEE7 984 aa17.15■□□□□ 0.34
HDAC4-216ENST00000544989 PHLPP1O60346 1717 aa17.15■□□□□ 0.34
HDAC4-216ENST00000544989 KNDC1Q76NI1 1749 aa17.15■□□□□ 0.34
HDAC4-216ENST00000544989 NALCNQ8IZF0 1738 aa17.15■□□□□ 0.34
HDAC4-216ENST00000544989 JCADQ9P266 1359 aa17.15■□□□□ 0.34
HDAC4-216ENST00000544989 TRIM26Q12899 539 aaPredicted RBP17.14■□□□□ 0.33
HDAC4-216ENST00000544989 CFAP70Q5T0N1 1121 aa17.14■□□□□ 0.33
HDAC4-216ENST00000544989 KDM2AQ9Y2K7 1162 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms