RNA–Protein interactions for RNA: ENST00000544622.4

YBX3-216, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 685 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-216ENST00000544622 CHGAP10645 457 aaKnown RBP17.09■□□□□ 0.33
YBX3-216ENST00000544622 MPHOSPH9Q99550 1183 aa17.09■□□□□ 0.33
YBX3-216ENST00000544622 PLEKHG1Q9ULL1 1385 aa17.09■□□□□ 0.33
YBX3-216ENST00000544622 STRCP1A6NGW2 1772 aa17.09■□□□□ 0.33
YBX3-216ENST00000544622 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.08■□□□□ 0.32
YBX3-216ENST00000544622 CLTCL1P53675 1640 aa17.07■□□□□ 0.32
YBX3-216ENST00000544622 SLC26A8Q96RN1 970 aa17.07■□□□□ 0.32
YBX3-216ENST00000544622 LRRC7Q96NW7 1537 aa17.06■□□□□ 0.32
YBX3-216ENST00000544622 RAB3GAP2Q9H2M9 1393 aa17.05■□□□□ 0.32
YBX3-216ENST00000544622 KCNA6P17658 529 aa17.05■□□□□ 0.32
YBX3-216ENST00000544622 HRCP23327 699 aa17.05■□□□□ 0.32
YBX3-216ENST00000544622 FOXD1Q16676 465 aa17.05■□□□□ 0.32
YBX3-216ENST00000544622 TBX22Q9Y458 520 aa17.05■□□□□ 0.32
YBX3-216ENST00000544622 ADAMTS13Q76LX8 1427 aa17.04■□□□□ 0.32
YBX3-216ENST00000544622 NUTM2DQ5VT03 806 aaPredicted RBP17.03■□□□□ 0.32
YBX3-216ENST00000544622 PPP1R15AO75807 674 aaPredicted RBP17.02■□□□□ 0.32
YBX3-216ENST00000544622 UBAP1LF5GYI3 381 aa17■□□□□ 0.31
YBX3-216ENST00000544622 ALKQ9UM73 1620 aa16.99■□□□□ 0.31
YBX3-216ENST00000544622 ZNF326Q5BKZ1 582 aaKnown RBP16.99■□□□□ 0.31
YBX3-216ENST00000544622 NEXMIFQ5QGS0 1516 aa16.99■□□□□ 0.31
YBX3-216ENST00000544622 NWD1Q149M9 1564 aa16.98■□□□□ 0.31
YBX3-216ENST00000544622 BCANQ96GW7 911 aa16.98■□□□□ 0.31
YBX3-216ENST00000544622 PIK3R4Q99570 1358 aa16.98■□□□□ 0.31
YBX3-216ENST00000544622 RPGRIP1LQ68CZ1 1315 aa16.97■□□□□ 0.31
YBX3-216ENST00000544622 TOM1O60784 492 aa16.97■□□□□ 0.31
YBX3-216ENST00000544622 SENP3Q9H4L4 574 aaPredicted RBP16.97■□□□□ 0.31
YBX3-216ENST00000544622 KIF1BO60333 1816 aa16.97■□□□□ 0.31
YBX3-216ENST00000544622 SETBP1Q9Y6X0 1596 aa16.97■□□□□ 0.31
YBX3-216ENST00000544622 NRXN3Q9Y4C0 1643 aa16.96■□□□□ 0.31
YBX3-216ENST00000544622 DIP2AQ14689 1571 aa16.96■□□□□ 0.31
YBX3-216ENST00000544622 CHD2O14647 1828 aaKnown RBP16.96■□□□□ 0.3
YBX3-216ENST00000544622 CCDC144AA2RUR9 1427 aa16.96■□□□□ 0.3
YBX3-216ENST00000544622 SPATA31E1Q6ZUB1 1445 aa16.96■□□□□ 0.3
YBX3-216ENST00000544622 NKTRP30414 1462 aaKnown RBP16.95■□□□□ 0.3
YBX3-216ENST00000544622 XIRP1Q702N8 1843 aaKnown RBP16.95■□□□□ 0.3
YBX3-216ENST00000544622 TMEM94Q12767 1356 aa16.94■□□□□ 0.3
YBX3-216ENST00000544622 VGFO15240 615 aaPredicted RBP16.94■□□□□ 0.3
YBX3-216ENST00000544622 PTPRUQ92729 1446 aa16.93■□□□□ 0.3
YBX3-216ENST00000544622 PROSER2Q86WR7 435 aaPredicted RBP16.92■□□□□ 0.3
YBX3-216ENST00000544622 METP08581 1390 aa16.91■□□□□ 0.3
YBX3-216ENST00000544622 ANKRD30BQ9BXX2 1392 aa16.91■□□□□ 0.3
YBX3-216ENST00000544622 RBM33Q96EV2 1170 aaKnown RBP16.91■□□□□ 0.3
YBX3-216ENST00000544622 NCOA3Q9Y6Q9 1424 aa16.9■□□□□ 0.3
YBX3-216ENST00000544622 AMOTL2Q9Y2J4 779 aa16.9■□□□□ 0.3
YBX3-216ENST00000544622 PPLO60437 1756 aa16.88■□□□□ 0.29
YBX3-216ENST00000544622 PIP4K2BP78356 416 aa16.87■□□□□ 0.29
YBX3-216ENST00000544622 RGL3Q3MIN7 710 aa16.87■□□□□ 0.29
YBX3-216ENST00000544622 ADGRF5Q8IZF2 1346 aa16.86■□□□□ 0.29
YBX3-216ENST00000544622 SETD1AO15047 1707 aaKnown RBP16.84■□□□□ 0.29
YBX3-216ENST00000544622 XRN1Q8IZH2 1706 aaKnown RBP16.84■□□□□ 0.29
YBX3-216ENST00000544622 HSPA1LP34931 641 aa16.83■□□□□ 0.28
YBX3-216ENST00000544622 FAM135BQ49AJ0 1406 aa16.83■□□□□ 0.28
YBX3-216ENST00000544622 IFT172Q9UG01 1749 aa16.83■□□□□ 0.28
YBX3-216ENST00000544622 PRAG1Q86YV5 1406 aa16.82■□□□□ 0.28
YBX3-216ENST00000544622 MSH6P52701 1360 aa16.82■□□□□ 0.28
YBX3-216ENST00000544622 C19orf44Q9H6X5 657 aa16.82■□□□□ 0.28
YBX3-216ENST00000544622 SCAF1Q9H7N4 1312 aaKnown RBP16.81■□□□□ 0.28
YBX3-216ENST00000544622 NRXN1Q9ULB1 1477 aa16.8■□□□□ 0.28
YBX3-216ENST00000544622 PIK3C2GO75747 1445 aa16.8■□□□□ 0.28
YBX3-216ENST00000544622 SLAIN2Q9P270 581 aa16.8■□□□□ 0.28
YBX3-216ENST00000544622 MYOM2P54296 1465 aa16.78■□□□□ 0.28
YBX3-216ENST00000544622 PTCH1Q13635 1447 aa16.78■□□□□ 0.28
YBX3-216ENST00000544622 CADPS2Q86UW7 1296 aa16.77■□□□□ 0.28
YBX3-216ENST00000544622 C14orf93Q9H972 538 aaKnown RBP16.77■□□□□ 0.28
YBX3-216ENST00000544622 ROBO2Q9HCK4 1378 aa16.77■□□□□ 0.27
YBX3-216ENST00000544622 DCCP43146 1447 aa16.76■□□□□ 0.27
YBX3-216ENST00000544622 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.76■□□□□ 0.27
YBX3-216ENST00000544622 STAC3Q96MF2 364 aa16.75■□□□□ 0.27
YBX3-216ENST00000544622 DHX57Q6P158 1386 aaKnown RBP16.74■□□□□ 0.27
YBX3-216ENST00000544622 TECPR2O15040 1411 aa16.73■□□□□ 0.27
YBX3-216ENST00000544622 C14orf37Q86TY3 774 aa16.73■□□□□ 0.27
YBX3-216ENST00000544622 ASXL1Q8IXJ9 1541 aa16.73■□□□□ 0.27
YBX3-216ENST00000544622 ABCC11Q96J66 1382 aa16.73■□□□□ 0.27
YBX3-216ENST00000544622 ROBO1Q9Y6N7 1651 aa16.72■□□□□ 0.27
YBX3-216ENST00000544622 ADGRL3Q9HAR2 1447 aa16.72■□□□□ 0.27
YBX3-216ENST00000544622 ATF3P18847 181 aa16.72■□□□□ 0.27
YBX3-216ENST00000544622 TRIM26Q12899 539 aaPredicted RBP16.72■□□□□ 0.27
YBX3-216ENST00000544622 TMEM132EQ6IEE7 984 aa16.72■□□□□ 0.27
YBX3-216ENST00000544622 LRPPRCP42704 1394 aaKnown RBP16.72■□□□□ 0.27
YBX3-216ENST00000544622 CFAP70Q5T0N1 1121 aa16.71■□□□□ 0.27
YBX3-216ENST00000544622 DCAF11Q8TEB1 546 aa16.7■□□□□ 0.26
YBX3-216ENST00000544622 SIRT1Q96EB6 747 aa16.7■□□□□ 0.26
YBX3-216ENST00000544622 MST1RQ04912 1400 aa16.7■□□□□ 0.26
YBX3-216ENST00000544622 YTHDC2Q9H6S0 1430 aaKnown RBP16.69■□□□□ 0.26
YBX3-216ENST00000544622 NALCNQ8IZF0 1738 aa16.67■□□□□ 0.26
YBX3-216ENST00000544622 BRINP3Q76B58 766 aa16.67■□□□□ 0.26
YBX3-216ENST00000544622 ADGRB1O14514 1584 aa16.66■□□□□ 0.26
YBX3-216ENST00000544622 WAPLQ7Z5K2 1190 aa16.66■□□□□ 0.26
YBX3-216ENST00000544622 STK26Q9P289 416 aa16.66■□□□□ 0.26
YBX3-216ENST00000544622 KDM2AQ9Y2K7 1162 aa16.66■□□□□ 0.26
YBX3-216ENST00000544622 LAMC1P11047 1609 aa16.66■□□□□ 0.26
YBX3-216ENST00000544622 KNDC1Q76NI1 1749 aa16.65■□□□□ 0.26
YBX3-216ENST00000544622 PLEKHH1Q9ULM0 1364 aa16.64■□□□□ 0.26
YBX3-216ENST00000544622 C1orf167Q5SNV9 1468 aa16.63■□□□□ 0.25
YBX3-216ENST00000544622 AHDC1Q5TGY3 1603 aaPredicted RBP16.63■□□□□ 0.25
YBX3-216ENST00000544622 DISP3Q9P2K9 1392 aa16.62■□□□□ 0.25
YBX3-216ENST00000544622 SIN3AQ96ST3 1273 aa16.61■□□□□ 0.25
YBX3-216ENST00000544622 DLC1Q96QB1 1528 aa16.6■□□□□ 0.25
YBX3-216ENST00000544622 COL16A1Q07092 1604 aaPredicted RBP16.6■□□□□ 0.25
YBX3-216ENST00000544622 MED1Q15648 1581 aaPredicted RBP16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms