RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 NBPF1Q3BBV0 1214 aa11.25□□□□□ -0.61
VPS13D-212ENST00000543766 RBM27Q9P2N5 1060 aaKnown RBP11.25□□□□□ -0.61
VPS13D-212ENST00000543766 MRVI1Q9Y6F6 885 aa11.25□□□□□ -0.61
VPS13D-212ENST00000543766 GPBP1L1Q9HC44 474 aaPredicted RBP11.24□□□□□ -0.61
VPS13D-212ENST00000543766 TRIM52Q96A61 297 aa11.23□□□□□ -0.61
VPS13D-212ENST00000543766 RRAGDQ9NQL2 400 aaPredicted RBP11.23□□□□□ -0.61
VPS13D-212ENST00000543766 CALR3Q96L12 384 aaKnown RBP11.23□□□□□ -0.61
VPS13D-212ENST00000543766 MFSD4BQ5TF39 518 aa11.22□□□□□ -0.61
VPS13D-212ENST00000543766 CSB-PGBD3P0DP91 1061 aa11.22□□□□□ -0.61
VPS13D-212ENST00000543766 GET4Q7L5D6 327 aaPredicted RBP11.21□□□□□ -0.61
VPS13D-212ENST00000543766 NBPF11Q86T75 865 aa11.21□□□□□ -0.61
VPS13D-212ENST00000543766 RNF217Q8TC41 542 aa11.21□□□□□ -0.61
VPS13D-212ENST00000543766 FRAT1Q92837 279 aaPredicted RBP11.21□□□□□ -0.61
VPS13D-212ENST00000543766 TERF2IPQ9NYB0 399 aa11.21□□□□□ -0.61
VPS13D-212ENST00000543766 KIF4AO95239 1232 aa11.21□□□□□ -0.61
VPS13D-212ENST00000543766 MAP2K1Q02750 393 aaPredicted RBP11.21□□□□□ -0.62
VPS13D-212ENST00000543766 ERICH4A6NGS2 130 aa11.2□□□□□ -0.62
VPS13D-212ENST00000543766 NBPF20Q3BBV1 942 aa11.2□□□□□ -0.62
VPS13D-212ENST00000543766 FGD5Q6ZNL6 1462 aa11.19□□□□□ -0.62
VPS13D-212ENST00000543766 KCNJ4P48050 445 aa11.19□□□□□ -0.62
VPS13D-212ENST00000543766 LMOD2Q6P5Q4 547 aa11.19□□□□□ -0.62
VPS13D-212ENST00000543766 ANP32CO43423 234 aa11.19□□□□□ -0.62
VPS13D-212ENST00000543766 ARAP1Q96P48 1450 aa11.19□□□□□ -0.62
VPS13D-212ENST00000543766 CCDC181Q5TID7 509 aa11.18□□□□□ -0.62
VPS13D-212ENST00000543766 DDX10Q13206 875 aaKnown RBP11.18□□□□□ -0.62
VPS13D-212ENST00000543766 TMC1Q8TDI8 760 aa11.18□□□□□ -0.62
VPS13D-212ENST00000543766 RIPOR2Q9Y4F9 1068 aa11.18□□□□□ -0.62
VPS13D-212ENST00000543766 VGFO15240 615 aaPredicted RBP11.17□□□□□ -0.62
VPS13D-212ENST00000543766 NUTM2GQ5VZR2 741 aa11.17□□□□□ -0.62
VPS13D-212ENST00000543766 MYH16Q9H6N6 1097 aa11.17□□□□□ -0.62
VPS13D-212ENST00000543766 CUL7Q14999 1698 aa11.17□□□□□ -0.62
VPS13D-212ENST00000543766 NAP1L1P55209 391 aaKnown RBP11.17□□□□□ -0.62
VPS13D-212ENST00000543766 MLECQ14165 292 aa11.17□□□□□ -0.62
VPS13D-212ENST00000543766 ABCA10Q8WWZ4 1543 aa11.16□□□□□ -0.62
VPS13D-212ENST00000543766 TRIM6-TRIM34B2RNG4 842 aa11.16□□□□□ -0.62
VPS13D-212ENST00000543766 ADAMTS12P58397 1594 aa11.16□□□□□ -0.62
VPS13D-212ENST00000543766 TRIM34Q9BYJ4 488 aa11.16□□□□□ -0.62
VPS13D-212ENST00000543766 MARCH6O60337 910 aa11.16□□□□□ -0.62
VPS13D-212ENST00000543766 CENPJQ9HC77 1338 aaPredicted RBP11.16□□□□□ -0.62
VPS13D-212ENST00000543766 POLA1P09884 1462 aaPredicted RBP11.15□□□□□ -0.62
VPS13D-212ENST00000543766 IPO8O15397 1037 aaKnown RBP11.15□□□□□ -0.62
VPS13D-212ENST00000543766 PNMA2Q9UL42 364 aa11.14□□□□□ -0.63
VPS13D-212ENST00000543766 TPM2P07951 284 aa11.14□□□□□ -0.63
VPS13D-212ENST00000543766 GORABQ5T7V8 394 aa11.14□□□□□ -0.63
VPS13D-212ENST00000543766 PROCA1Q8NCQ7 364 aaPredicted RBP11.14□□□□□ -0.63
VPS13D-212ENST00000543766 PES1O00541 588 aaKnown RBP11.13□□□□□ -0.63
VPS13D-212ENST00000543766 GOLGA6CA6NDK9 693 aa11.13□□□□□ -0.63
VPS13D-212ENST00000543766 GOLGA6BA6NDN3 693 aa11.13□□□□□ -0.63
VPS13D-212ENST00000543766 GOLGA6DP0CG33 693 aa11.13□□□□□ -0.63
VPS13D-212ENST00000543766 SENP3Q9H4L4 574 aaPredicted RBP11.13□□□□□ -0.63
VPS13D-212ENST00000543766 GOLGA6AQ9NYA3 693 aa11.13□□□□□ -0.63
VPS13D-212ENST00000543766 OTUD6BQ8N6M0 293 aa11.13□□□□□ -0.63
VPS13D-212ENST00000543766 FBXW7Q969H0 707 aa11.13□□□□□ -0.63
VPS13D-212ENST00000543766 MAGI1Q96QZ7 1491 aaPredicted RBP11.12□□□□□ -0.63
VPS13D-212ENST00000543766 CCDC82Q8N4S0 544 aa11.12□□□□□ -0.63
VPS13D-212ENST00000543766 MAP3K1Q13233 1512 aa11.12□□□□□ -0.63
VPS13D-212ENST00000543766 ERBB3P21860 1342 aa11.12□□□□□ -0.63
VPS13D-212ENST00000543766 EVI5LQ96CN4 794 aa11.12□□□□□ -0.63
VPS13D-212ENST00000543766 KIF13AQ9H1H9 1805 aa11.12□□□□□ -0.63
VPS13D-212ENST00000543766 ZNF608Q9ULD9 1512 aaPredicted RBP11.12□□□□□ -0.63
VPS13D-212ENST00000543766 NBPF9Q3BBW0 867 aa11.12□□□□□ -0.63
VPS13D-212ENST00000543766 MAP7D2Q96T17 732 aa11.11□□□□□ -0.63
VPS13D-212ENST00000543766 IGF1RP08069 1367 aa11.11□□□□□ -0.63
VPS13D-212ENST00000543766 RNF123Q5XPI4 1314 aa11.11□□□□□ -0.63
VPS13D-212ENST00000543766 DMTNQ08495 405 aa11.11□□□□□ -0.63
VPS13D-212ENST00000543766 ZNF771Q7L3S4 317 aaPredicted RBP11.11□□□□□ -0.63
VPS13D-212ENST00000543766 CCDC96Q2M329 555 aa11.11□□□□□ -0.63
VPS13D-212ENST00000543766 NBPF6Q5VWK0 638 aa11.11□□□□□ -0.63
VPS13D-212ENST00000543766 NBPF5PQ86XG9 351 aaPredicted RBP11.11□□□□□ -0.63
VPS13D-212ENST00000543766 NBPF4Q96M43 638 aa11.11□□□□□ -0.63
VPS13D-212ENST00000543766 CTTNBP2Q8WZ74 1663 aa11.11□□□□□ -0.63
VPS13D-212ENST00000543766 ARHGEF11O15085 1522 aa11.11□□□□□ -0.63
VPS13D-212ENST00000543766 CEP120Q8N960 986 aa11.1□□□□□ -0.63
VPS13D-212ENST00000543766 TPD52L2O43399 206 aaKnown RBP11.1□□□□□ -0.63
VPS13D-212ENST00000543766 KIF20AO95235 890 aa11.1□□□□□ -0.63
VPS13D-212ENST00000543766 SSFA2P28290 1259 aa11.1□□□□□ -0.63
VPS13D-212ENST00000543766 ARHGAP35Q9NRY4 1499 aa11.1□□□□□ -0.63
VPS13D-212ENST00000543766 TDO2P48775 406 aa11.09□□□□□ -0.63
VPS13D-212ENST00000543766 PDE6BP35913 854 aa11.09□□□□□ -0.63
VPS13D-212ENST00000543766 B4GALNT3Q6L9W6 998 aa11.09□□□□□ -0.63
VPS13D-212ENST00000543766 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.09□□□□□ -0.63
VPS13D-212ENST00000543766 ACRBPQ8NEB7 543 aa11.09□□□□□ -0.63
VPS13D-212ENST00000543766 DNAJC14Q6Y2X3 702 aaPredicted RBP11.08□□□□□ -0.64
VPS13D-212ENST00000543766 SATB1Q01826 763 aa11.08□□□□□ -0.64
VPS13D-212ENST00000543766 PAIP2Q9BPZ3 127 aaKnown RBP11.08□□□□□ -0.64
VPS13D-212ENST00000543766 TSHZ1Q6ZSZ6 1077 aa11.08□□□□□ -0.64
VPS13D-212ENST00000543766 CFAP43Q8NDM7 1665 aa11.08□□□□□ -0.64
VPS13D-212ENST00000543766 DCAF11Q8TEB1 546 aa11.07□□□□□ -0.64
VPS13D-212ENST00000543766 EFCAB5A4FU69 1503 aa11.06□□□□□ -0.64
VPS13D-212ENST00000543766 UTP14CQ5TAP6 766 aaKnown RBP11.06□□□□□ -0.64
VPS13D-212ENST00000543766 RAB3GAP2Q9H2M9 1393 aa11.06□□□□□ -0.64
VPS13D-212ENST00000543766 KDM5BQ9UGL1 1544 aa11.06□□□□□ -0.64
VPS13D-212ENST00000543766 PPP4R3CPQ6ZMV5 832 aa11.06□□□□□ -0.64
VPS13D-212ENST00000543766 NCOA2Q15596 1464 aa11.06□□□□□ -0.64
VPS13D-212ENST00000543766 IRX5P78411 483 aaPredicted RBP11.06□□□□□ -0.64
VPS13D-212ENST00000543766 ZNF280DQ6N043 979 aa11.06□□□□□ -0.64
VPS13D-212ENST00000543766 LETM1O95202 739 aaPredicted RBP11.05□□□□□ -0.64
VPS13D-212ENST00000543766 SCP2P22307 547 aa11.05□□□□□ -0.64
VPS13D-212ENST00000543766 CALRP27797 417 aaKnown RBP11.05□□□□□ -0.64
VPS13D-212ENST00000543766 TRERF1Q96PN7 1200 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms