RNA–Protein interactions for RNA: ENST00000542310.1

VPS33A-206, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 756 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-206ENST00000542310 ITGAEP38570 1179 aa23.84■■□□□ 1.41
VPS33A-206ENST00000542310 RIMS2Q9UQ26 1411 aa23.84■■□□□ 1.41
VPS33A-206ENST00000542310 SCAF1Q9H7N4 1312 aaKnown RBP23.84■■□□□ 1.41
VPS33A-206ENST00000542310 PIP4K2BP78356 416 aa23.83■■□□□ 1.41
VPS33A-206ENST00000542310 DIP2AQ14689 1571 aa23.82■■□□□ 1.4
VPS33A-206ENST00000542310 CHD2O14647 1828 aaKnown RBP23.81■■□□□ 1.4
VPS33A-206ENST00000542310 KCNA6P17658 529 aa23.79■■□□□ 1.4
VPS33A-206ENST00000542310 HSPA1LP34931 641 aa23.79■■□□□ 1.4
VPS33A-206ENST00000542310 HDGFP51858 240 aaKnown RBP23.79■■□□□ 1.4
VPS33A-206ENST00000542310 NAIPQ13075 1403 aa23.78■■□□□ 1.4
VPS33A-206ENST00000542310 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.76■■□□□ 1.39
VPS33A-206ENST00000542310 MED1Q15648 1581 aaPredicted RBP23.76■■□□□ 1.39
VPS33A-206ENST00000542310 SLC26A8Q96RN1 970 aa23.75■■□□□ 1.39
VPS33A-206ENST00000542310 TMEM94Q12767 1356 aa23.75■■□□□ 1.39
VPS33A-206ENST00000542310 HFM1A2PYH4 1435 aa23.75■■□□□ 1.39
VPS33A-206ENST00000542310 TRPM2O94759 1503 aa23.74■■□□□ 1.39
VPS33A-206ENST00000542310 PPP1R15AO75807 674 aaPredicted RBP23.74■■□□□ 1.39
VPS33A-206ENST00000542310 CLTCL1P53675 1640 aa23.7■■□□□ 1.39
VPS33A-206ENST00000542310 ADAMTS13Q76LX8 1427 aa23.7■■□□□ 1.38
VPS33A-206ENST00000542310 PIK3R4Q99570 1358 aa23.69■■□□□ 1.38
VPS33A-206ENST00000542310 CHGAP10645 457 aaKnown RBP23.69■■□□□ 1.38
VPS33A-206ENST00000542310 BCANQ96GW7 911 aa23.69■■□□□ 1.38
VPS33A-206ENST00000542310 FAM135BQ49AJ0 1406 aa23.68■■□□□ 1.38
VPS33A-206ENST00000542310 KIF1BO60333 1816 aa23.68■■□□□ 1.38
VPS33A-206ENST00000542310 TBX22Q9Y458 520 aa23.68■■□□□ 1.38
VPS33A-206ENST00000542310 SETBP1Q9Y6X0 1596 aa23.68■■□□□ 1.38
VPS33A-206ENST00000542310 NRXN3Q9Y4C0 1643 aa23.67■■□□□ 1.38
VPS33A-206ENST00000542310 ILDR2Q71H61 639 aa23.67■■□□□ 1.38
VPS33A-206ENST00000542310 NCOA3Q9Y6Q9 1424 aa23.67■■□□□ 1.38
VPS33A-206ENST00000542310 ROBO1Q9Y6N7 1651 aa23.67■■□□□ 1.38
VPS33A-206ENST00000542310 PROSER2Q86WR7 435 aaPredicted RBP23.66■■□□□ 1.38
VPS33A-206ENST00000542310 MSH6P52701 1360 aa23.65■■□□□ 1.38
VPS33A-206ENST00000542310 NEXMIFQ5QGS0 1516 aa23.63■■□□□ 1.37
VPS33A-206ENST00000542310 XRN1Q8IZH2 1706 aaKnown RBP23.62■■□□□ 1.37
VPS33A-206ENST00000542310 SOCS7O14512 581 aa23.57■■□□□ 1.36
VPS33A-206ENST00000542310 NUTM2DQ5VT03 806 aaPredicted RBP23.57■■□□□ 1.36
VPS33A-206ENST00000542310 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.56■■□□□ 1.36
VPS33A-206ENST00000542310 SENP3Q9H4L4 574 aaPredicted RBP23.55■■□□□ 1.36
VPS33A-206ENST00000542310 RBM33Q96EV2 1170 aaKnown RBP23.54■■□□□ 1.36
VPS33A-206ENST00000542310 PTPRUQ92729 1446 aa23.53■■□□□ 1.36
VPS33A-206ENST00000542310 PHLPP1O60346 1717 aa23.53■■□□□ 1.36
VPS33A-206ENST00000542310 ZNF326Q5BKZ1 582 aaKnown RBP23.52■■□□□ 1.36
VPS33A-206ENST00000542310 DCCP43146 1447 aa23.51■■□□□ 1.35
VPS33A-206ENST00000542310 SETD1AO15047 1707 aaKnown RBP23.51■■□□□ 1.35
VPS33A-206ENST00000542310 PPLO60437 1756 aa23.51■■□□□ 1.35
VPS33A-206ENST00000542310 TRIM52Q96A61 297 aa23.51■■□□□ 1.35
VPS33A-206ENST00000542310 SLC4A1APQ9BWU0 796 aaKnown RBP23.49■■□□□ 1.35
VPS33A-206ENST00000542310 SLAIN2Q9P270 581 aa23.48■■□□□ 1.35
VPS33A-206ENST00000542310 PHF23Q9BUL5 403 aaPredicted RBP23.47■■□□□ 1.35
VPS33A-206ENST00000542310 AMOTL2Q9Y2J4 779 aa23.47■■□□□ 1.35
VPS33A-206ENST00000542310 COL16A1Q07092 1604 aaPredicted RBP23.47■■□□□ 1.35
VPS33A-206ENST00000542310 AHDC1Q5TGY3 1603 aaPredicted RBP23.47■■□□□ 1.35
VPS33A-206ENST00000542310 CADPS2Q86UW7 1296 aa23.46■■□□□ 1.35
VPS33A-206ENST00000542310 C19orf44Q9H6X5 657 aa23.45■■□□□ 1.34
VPS33A-206ENST00000542310 PRAG1Q86YV5 1406 aa23.44■■□□□ 1.34
VPS33A-206ENST00000542310 METP08581 1390 aa23.44■■□□□ 1.34
VPS33A-206ENST00000542310 ACIN1Q9UKV3 1341 aaKnown RBP23.44■■□□□ 1.34
VPS33A-206ENST00000542310 C14orf37Q86TY3 774 aa23.44■■□□□ 1.34
VPS33A-206ENST00000542310 RPGRIP1LQ68CZ1 1315 aa23.43■■□□□ 1.34
VPS33A-206ENST00000542310 NALCNQ8IZF0 1738 aa23.42■■□□□ 1.34
VPS33A-206ENST00000542310 IFT172Q9UG01 1749 aa23.42■■□□□ 1.34
VPS33A-206ENST00000542310 PTCH1Q13635 1447 aa23.42■■□□□ 1.34
VPS33A-206ENST00000542310 ATF3P18847 181 aa23.41■■□□□ 1.34
VPS33A-206ENST00000542310 VGFO15240 615 aaPredicted RBP23.4■■□□□ 1.34
VPS33A-206ENST00000542310 CCDC144AA2RUR9 1427 aa23.4■■□□□ 1.34
VPS33A-206ENST00000542310 ADGRL3Q9HAR2 1447 aa23.4■■□□□ 1.34
VPS33A-206ENST00000542310 JCADQ9P266 1359 aa23.39■■□□□ 1.33
VPS33A-206ENST00000542310 SHPRHQ149N8 1683 aa23.38■■□□□ 1.33
VPS33A-206ENST00000542310 NHSL1Q5SYE7 1610 aa23.37■■□□□ 1.33
VPS33A-206ENST00000542310 ASXL1Q8IXJ9 1541 aa23.36■■□□□ 1.33
VPS33A-206ENST00000542310 MST1RQ04912 1400 aa23.35■■□□□ 1.33
VPS33A-206ENST00000542310 SPATA31E1Q6ZUB1 1445 aa23.34■■□□□ 1.33
VPS33A-206ENST00000542310 SETD5Q9C0A6 1442 aa23.33■■□□□ 1.33
VPS33A-206ENST00000542310 MPHOSPH9Q99550 1183 aa23.33■■□□□ 1.33
VPS33A-206ENST00000542310 ANKRD30BQ9BXX2 1392 aa23.3■■□□□ 1.32
VPS33A-206ENST00000542310 FOXD1Q16676 465 aa23.3■■□□□ 1.32
VPS33A-206ENST00000542310 KNDC1Q76NI1 1749 aa23.3■■□□□ 1.32
VPS33A-206ENST00000542310 BRINP3Q76B58 766 aa23.29■■□□□ 1.32
VPS33A-206ENST00000542310 LAMC1P11047 1609 aa23.29■■□□□ 1.32
VPS33A-206ENST00000542310 RGS17Q9UGC6 210 aaPredicted RBP23.28■■□□□ 1.32
VPS33A-206ENST00000542310 SPATA31A6Q5VVP1 1343 aa23.28■■□□□ 1.32
VPS33A-206ENST00000542310 ROBO2Q9HCK4 1378 aa23.27■■□□□ 1.31
VPS33A-206ENST00000542310 CDC42BPGQ6DT37 1551 aa23.25■■□□□ 1.31
VPS33A-206ENST00000542310 TECPR2O15040 1411 aa23.25■■□□□ 1.31
VPS33A-206ENST00000542310 PIK3C2GO75747 1445 aa23.25■■□□□ 1.31
VPS33A-206ENST00000542310 LRP6O75581 1613 aa23.24■■□□□ 1.31
VPS33A-206ENST00000542310 RAB3GAP2Q9H2M9 1393 aa23.23■■□□□ 1.31
VPS33A-206ENST00000542310 MYOM2P54296 1465 aa23.22■■□□□ 1.31
VPS33A-206ENST00000542310 C1orf167Q5SNV9 1468 aa23.22■■□□□ 1.31
VPS33A-206ENST00000542310 ADGRF5Q8IZF2 1346 aa23.21■■□□□ 1.31
VPS33A-206ENST00000542310 NRXN1Q9ULB1 1477 aa23.19■■□□□ 1.3
VPS33A-206ENST00000542310 LRPPRCP42704 1394 aaKnown RBP23.17■■□□□ 1.3
VPS33A-206ENST00000542310 RGL3Q3MIN7 710 aa23.17■■□□□ 1.3
VPS33A-206ENST00000542310 POTEAQ6S8J7 498 aa23.14■■□□□ 1.29
VPS33A-206ENST00000542310 ABCC11Q96J66 1382 aa23.14■■□□□ 1.29
VPS33A-206ENST00000542310 LRRC59Q96AG4 307 aaKnown RBP23.12■■□□□ 1.29
VPS33A-206ENST00000542310 YTHDC2Q9H6S0 1430 aaKnown RBP23.11■■□□□ 1.29
VPS33A-206ENST00000542310 MEX3CQ5U5Q3 659 aaKnown RBP23.11■■□□□ 1.29
VPS33A-206ENST00000542310 PNPLA6Q8IY17 1366 aa23.11■■□□□ 1.29
VPS33A-206ENST00000542310 FMN2Q9NZ56 1722 aa23.11■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms