RNA–Protein interactions for RNA: ENST00000541586.5

CCM2-218, Transcript of CCM2 scaffold protein, humanhuman

TSL 3 BASIC

Gene CCM2, Length 1,719 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-218ENST00000541586 SENP3Q9H4L4 574 aaPredicted RBP39.71■■■■□ 3.95
CCM2-218ENST00000541586 EID1Q9Y6B2 187 aa39.7■■■■□ 3.95
CCM2-218ENST00000541586 KDM5AP29375 1690 aaKnown RBP39.69■■■■□ 3.94
CCM2-218ENST00000541586 ANKLE2Q86XL3 938 aa39.69■■■■□ 3.94
CCM2-218ENST00000541586 ZNF316A6NFI3 1004 aaPredicted RBP39.68■■■■□ 3.94
CCM2-218ENST00000541586 LTKP29376 864 aa39.68■■■■□ 3.94
CCM2-218ENST00000541586 HDGFP51858 240 aaKnown RBP39.68■■■■□ 3.94
CCM2-218ENST00000541586 RIMS2Q9UQ26 1411 aa39.67■■■■□ 3.94
CCM2-218ENST00000541586 NCKAP5LQ9HCH0 1330 aa39.67■■■■□ 3.94
CCM2-218ENST00000541586 KDM2AQ9Y2K7 1162 aa39.65■■■■□ 3.94
CCM2-218ENST00000541586 DCAF11Q8TEB1 546 aa39.65■■■■□ 3.94
CCM2-218ENST00000541586 RPGRIP1LQ68CZ1 1315 aa39.63■■■■□ 3.93
CCM2-218ENST00000541586 ABCF1Q8NE71 845 aaKnown RBP eCLIP39.62■■■■□ 3.93
CCM2-218ENST00000541586 SLIT1O75093 1534 aa39.61■■■■□ 3.93
CCM2-218ENST00000541586 BCANQ96GW7 911 aa39.6■■■■□ 3.93
CCM2-218ENST00000541586 ARHGAP23Q9P227 1491 aa39.59■■■■□ 3.93
CCM2-218ENST00000541586 ZFYVE9O95405 1425 aa39.59■■■■□ 3.93
CCM2-218ENST00000541586 VGFO15240 615 aaPredicted RBP39.57■■■■□ 3.93
CCM2-218ENST00000541586 NEURL4Q96JN8 1562 aa39.56■■■■□ 3.92
CCM2-218ENST00000541586 NEXMIFQ5QGS0 1516 aa39.54■■■■□ 3.92
CCM2-218ENST00000541586 SCAF11Q99590 1463 aaKnown RBP39.54■■■■□ 3.92
CCM2-218ENST00000541586 ADGRF5Q8IZF2 1346 aa39.5■■■■□ 3.91
CCM2-218ENST00000541586 NBPF8Q3BBV2 869 aa39.47■■■■□ 3.91
CCM2-218ENST00000541586 PPLO60437 1756 aa39.46■■■■□ 3.91
CCM2-218ENST00000541586 STRCQ7RTU9 1775 aa39.43■■■■□ 3.9
CCM2-218ENST00000541586 SLC26A8Q96RN1 970 aa39.42■■■■□ 3.9
CCM2-218ENST00000541586 PLEKHG1Q9ULL1 1385 aa39.41■■■■□ 3.9
CCM2-218ENST00000541586 NPHP4O75161 1426 aaPredicted RBP39.41■■■■□ 3.9
CCM2-218ENST00000541586 POLR1AO95602 1720 aaPredicted RBP39.41■■■■□ 3.9
CCM2-218ENST00000541586 STAC3Q96MF2 364 aa39.4■■■■□ 3.9
CCM2-218ENST00000541586 IFT172Q9UG01 1749 aa39.39■■■■□ 3.9
CCM2-218ENST00000541586 DMRT2Q9Y5R5 561 aa39.36■■■■□ 3.89
CCM2-218ENST00000541586 MED14O60244 1454 aa39.36■■■■□ 3.89
CCM2-218ENST00000541586 MYOM2P54296 1465 aa39.34■■■■□ 3.89
CCM2-218ENST00000541586 CFAP70Q5T0N1 1121 aa39.3■■■■□ 3.88
CCM2-218ENST00000541586 IQGAP1P46940 1657 aa39.29■■■■□ 3.88
CCM2-218ENST00000541586 PIK3C2GO75747 1445 aa39.28■■■■□ 3.88
CCM2-218ENST00000541586 NRXN1Q9ULB1 1477 aa39.25■■■■□ 3.87
CCM2-218ENST00000541586 TBX22Q9Y458 520 aa39.25■■■■□ 3.87
CCM2-218ENST00000541586 ADAMTS13Q76LX8 1427 aa39.24■■■■□ 3.87
CCM2-218ENST00000541586 PRAG1Q86YV5 1406 aa39.24■■■■□ 3.87
CCM2-218ENST00000541586 C14orf93Q9H972 538 aaKnown RBP39.24■■■■□ 3.87
CCM2-218ENST00000541586 SETBP1Q9Y6X0 1596 aa39.22■■■■□ 3.87
CCM2-218ENST00000541586 TMEM132EQ6IEE7 984 aa39.21■■■■□ 3.87
CCM2-218ENST00000541586 RALGAPBQ86X10 1494 aa39.2■■■■□ 3.87
CCM2-218ENST00000541586 NRXN3Q9Y4C0 1643 aa39.2■■■■□ 3.87
CCM2-218ENST00000541586 DIEXFQ68CQ4 756 aaKnown RBP39.2■■■■□ 3.87
CCM2-218ENST00000541586 HIRIP3Q9BW71 556 aaPredicted RBP39.2■■■■□ 3.87
CCM2-218ENST00000541586 ALKQ9UM73 1620 aa39.19■■■■□ 3.86
CCM2-218ENST00000541586 METP08581 1390 aa39.16■■■■□ 3.86
CCM2-218ENST00000541586 EIF4G2P78344 907 aaKnown RBP eCLIP39.15■■■■□ 3.86
CCM2-218ENST00000541586 NBPF1Q3BBV0 1214 aa39.15■■■■□ 3.86
CCM2-218ENST00000541586 HSPA5P11021 654 aaKnown RBP39.14■■■■□ 3.86
CCM2-218ENST00000541586 TRPM1Q7Z4N2 1603 aa39.1■■■■□ 3.85
CCM2-218ENST00000541586 STK26Q9P289 416 aa39.1■■■■□ 3.85
CCM2-218ENST00000541586 DIP2AQ14689 1571 aa39.08■■■■□ 3.85
CCM2-218ENST00000541586 ZNF335Q9H4Z2 1342 aaPredicted RBP39.08■■■■□ 3.85
CCM2-218ENST00000541586 AMOTL2Q9Y2J4 779 aa39.07■■■■□ 3.85
CCM2-218ENST00000541586 ROCK2O75116 1388 aaKnown RBP39.05■■■■□ 3.84
CCM2-218ENST00000541586 KCNA6P17658 529 aa39.03■■■■□ 3.84
CCM2-218ENST00000541586 SETD1AO15047 1707 aaKnown RBP39.02■■■■□ 3.84
CCM2-218ENST00000541586 CARD11Q9BXL7 1154 aa39.02■■■■□ 3.84
CCM2-218ENST00000541586 PTPRUQ92729 1446 aa39.02■■■■□ 3.84
CCM2-218ENST00000541586 PIK3R4Q99570 1358 aa39.01■■■■□ 3.84
CCM2-218ENST00000541586 LAMC1P11047 1609 aa39.01■■■■□ 3.83
CCM2-218ENST00000541586 USP47Q96K76 1375 aa38.99■■■■□ 3.83
CCM2-218ENST00000541586 TRAK1Q9UPV9 953 aa38.99■■■■□ 3.83
CCM2-218ENST00000541586 ASXL1Q8IXJ9 1541 aa38.97■■■■□ 3.83
CCM2-218ENST00000541586 GPRASP1Q5JY77 1395 aa38.96■■■■□ 3.83
CCM2-218ENST00000541586 YTHDC2Q9H6S0 1430 aaKnown RBP38.96■■■■□ 3.83
CCM2-218ENST00000541586 KIAA1210Q9ULL0 1709 aa38.96■■■■□ 3.83
CCM2-218ENST00000541586 ADGRB1O14514 1584 aa38.94■■■■□ 3.82
CCM2-218ENST00000541586 RBM33Q96EV2 1170 aaKnown RBP38.93■■■■□ 3.82
CCM2-218ENST00000541586 CHD2O14647 1828 aaKnown RBP38.93■■■■□ 3.82
CCM2-218ENST00000541586 LRPPRCP42704 1394 aaKnown RBP38.92■■■■□ 3.82
CCM2-218ENST00000541586 PROSER2Q86WR7 435 aaPredicted RBP38.9■■■■□ 3.82
CCM2-218ENST00000541586 ABCC11Q96J66 1382 aa38.88■■■■□ 3.81
CCM2-218ENST00000541586 STRCP1A6NGW2 1772 aa38.86■■■■□ 3.81
CCM2-218ENST00000541586 WAPLQ7Z5K2 1190 aa38.86■■■■□ 3.81
CCM2-218ENST00000541586 SAFB2Q14151 953 aaKnown RBP eCLIP38.84■■■■□ 3.815e-8■■■□□ 18
CCM2-218ENST00000541586 ROBO2Q9HCK4 1378 aa38.84■■■■□ 3.81
CCM2-218ENST00000541586 POGKQ9P215 609 aa38.83■■■■□ 3.81
CCM2-218ENST00000541586 PRAM1Q96QH2 718 aa38.82■■■■□ 3.8
CCM2-218ENST00000541586 NWD1Q149M9 1564 aa38.81■■■■□ 3.8
CCM2-218ENST00000541586 XRN1Q8IZH2 1706 aaKnown RBP38.79■■■■□ 3.8
CCM2-218ENST00000541586 WASHC2AQ641Q2 1341 aa38.79■■■■□ 3.8
CCM2-218ENST00000541586 DDX10Q13206 875 aaKnown RBP38.79■■■■□ 3.8
CCM2-218ENST00000541586 C14orf37Q86TY3 774 aa38.77■■■■□ 3.8
CCM2-218ENST00000541586 C11orf95C9JLR9 678 aaPredicted RBP38.77■■■■□ 3.8
CCM2-218ENST00000541586 TECPR2O15040 1411 aa38.76■■■■□ 3.8
CCM2-218ENST00000541586 ST20-MTHFSA0A0A6YYL1 179 aa38.76■■■■□ 3.8
CCM2-218ENST00000541586 PLEKHH1Q9ULM0 1364 aa38.76■■■■□ 3.8
CCM2-218ENST00000541586 NKTRP30414 1462 aaKnown RBP38.76■■■■□ 3.79
CCM2-218ENST00000541586 LTBP4Q8N2S1 1624 aa38.75■■■■□ 3.79
CCM2-218ENST00000541586 SIRT1Q96EB6 747 aa38.75■■■■□ 3.79
CCM2-218ENST00000541586 TMEM94Q12767 1356 aa38.74■■■■□ 3.79
CCM2-218ENST00000541586 PTCH1Q13635 1447 aa38.74■■■■□ 3.79
CCM2-218ENST00000541586 CPS1P31327 1500 aa38.73■■■■□ 3.79
CCM2-218ENST00000541586 LRRC7Q96NW7 1537 aa38.72■■■■□ 3.79
CCM2-218ENST00000541586 CCDC7Q96M83 1385 aa38.7■■■■□ 3.79
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms