RNA–Protein interactions for RNA: ENST00000540998.5

CDC42SE1-207, Transcript of CDC42 small effector 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CDC42SE1, Length 3,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1-207ENST00000540998 TNNQ9UQP3 1299 aa13.51□□□□□ -0.25
CDC42SE1-207ENST00000540998 GSE1Q14687 1217 aa13.51□□□□□ -0.25
CDC42SE1-207ENST00000540998 FAM161AQ3B820 660 aa13.51□□□□□ -0.25
CDC42SE1-207ENST00000540998 PANK1Q8TE04 598 aa13.51□□□□□ -0.25
CDC42SE1-207ENST00000540998 DDRGK1Q96HY6 314 aa13.51□□□□□ -0.25
CDC42SE1-207ENST00000540998 ZNF521Q96K83 1311 aa13.5□□□□□ -0.25
CDC42SE1-207ENST00000540998 WASHC2CQ9Y4E1 1318 aa13.5□□□□□ -0.25
CDC42SE1-207ENST00000540998 SLFN5Q08AF3 891 aa13.5□□□□□ -0.25
CDC42SE1-207ENST00000540998 ARHGEF5Q12774 1597 aa13.5□□□□□ -0.25
CDC42SE1-207ENST00000540998 BCL2L13Q9BXK5 485 aa13.5□□□□□ -0.25
CDC42SE1-207ENST00000540998 ARXQ96QS3 562 aa13.49□□□□□ -0.25
CDC42SE1-207ENST00000540998 USP35Q9P2H5 1018 aa13.49□□□□□ -0.25
CDC42SE1-207ENST00000540998 COG6Q9Y2V7 657 aa13.49□□□□□ -0.25
CDC42SE1-207ENST00000540998 PRKCSHP14314 528 aaPredicted RBP13.48□□□□□ -0.25
CDC42SE1-207ENST00000540998 AFAP1Q8N556 730 aa13.48□□□□□ -0.25
CDC42SE1-207ENST00000540998 PREX2Q70Z35 1606 aa13.47□□□□□ -0.25
CDC42SE1-207ENST00000540998 SLKQ9H2G2 1235 aaPredicted RBP13.47□□□□□ -0.25
CDC42SE1-207ENST00000540998 CFAP70Q5T0N1 1121 aa13.46□□□□□ -0.25
CDC42SE1-207ENST00000540998 CARD14Q9BXL6 1004 aa13.46□□□□□ -0.26
CDC42SE1-207ENST00000540998 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.45□□□□□ -0.264e-7■■□□□ 13.5
CDC42SE1-207ENST00000540998 CANXP27824 592 aaKnown RBP13.44□□□□□ -0.26
CDC42SE1-207ENST00000540998 SPRYD3Q8NCJ5 442 aa13.44□□□□□ -0.26
CDC42SE1-207ENST00000540998 ERCC6L2Q5T890 1561 aa13.44□□□□□ -0.26
CDC42SE1-207ENST00000540998 CLUAP1Q96AJ1 413 aa13.44□□□□□ -0.26
CDC42SE1-207ENST00000540998 UNC13BO14795 1591 aa13.44□□□□□ -0.26
CDC42SE1-207ENST00000540998 USP19O94966 1318 aa13.43□□□□□ -0.26
CDC42SE1-207ENST00000540998 TRAPPC8Q9Y2L5 1435 aa13.43□□□□□ -0.26
CDC42SE1-207ENST00000540998 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.42□□□□□ -0.26
CDC42SE1-207ENST00000540998 POGKQ9P215 609 aa13.42□□□□□ -0.26
CDC42SE1-207ENST00000540998 IQGAP3Q86VI3 1631 aa13.41□□□□□ -0.26
CDC42SE1-207ENST00000540998 RSPH4AQ5TD94 716 aa13.41□□□□□ -0.26
CDC42SE1-207ENST00000540998 RLBP1P12271 317 aa13.41□□□□□ -0.26
CDC42SE1-207ENST00000540998 ADGRF5Q8IZF2 1346 aa13.4□□□□□ -0.26
CDC42SE1-207ENST00000540998 UGGT1Q9NYU2 1555 aa13.4□□□□□ -0.26
CDC42SE1-207ENST00000540998 TRMT2AQ8IZ69 625 aaKnown RBP13.4□□□□□ -0.26
CDC42SE1-207ENST00000540998 ASXL1Q8IXJ9 1541 aa13.4□□□□□ -0.26
CDC42SE1-207ENST00000540998 EIF2AK4Q9P2K8 1649 aaKnown RBP13.39□□□□□ -0.27
CDC42SE1-207ENST00000540998 NKTRP30414 1462 aaKnown RBP13.39□□□□□ -0.27
CDC42SE1-207ENST00000540998 MADDQ8WXG6 1647 aa13.39□□□□□ -0.27
CDC42SE1-207ENST00000540998 CHGAP10645 457 aaKnown RBP13.39□□□□□ -0.27
CDC42SE1-207ENST00000540998 RNF17Q9BXT8 1623 aaKnown RBP13.38□□□□□ -0.27
CDC42SE1-207ENST00000540998 EIF5BO60841 1220 aaKnown RBP13.38□□□□□ -0.27
CDC42SE1-207ENST00000540998 MAST1Q9Y2H9 1570 aa13.38□□□□□ -0.27
CDC42SE1-207ENST00000540998 LAMC1P11047 1609 aa13.38□□□□□ -0.27
CDC42SE1-207ENST00000540998 CENPJQ9HC77 1338 aaPredicted RBP13.38□□□□□ -0.27
CDC42SE1-207ENST00000540998 NUTM2DQ5VT03 806 aaPredicted RBP13.38□□□□□ -0.27
CDC42SE1-207ENST00000540998 WWC1Q8IX03 1113 aa13.38□□□□□ -0.27
CDC42SE1-207ENST00000540998 PCDHB15Q9Y5E8 787 aa13.38□□□□□ -0.27
CDC42SE1-207ENST00000540998 ATP10AO60312 1499 aa13.37□□□□□ -0.27
CDC42SE1-207ENST00000540998 SCAF11Q99590 1463 aaKnown RBP13.37□□□□□ -0.27
CDC42SE1-207ENST00000540998 MYOM1P52179 1685 aa13.37□□□□□ -0.27
CDC42SE1-207ENST00000540998 E9PSI1 815 aa13.36□□□□□ -0.27
CDC42SE1-207ENST00000540998 KIF3BO15066 747 aa13.36□□□□□ -0.27
CDC42SE1-207ENST00000540998 SPAG9O60271 1321 aaKnown RBP13.36□□□□□ -0.27
CDC42SE1-207ENST00000540998 SLC12A5Q9H2X9 1139 aa13.36□□□□□ -0.27
CDC42SE1-207ENST00000540998 TRAK1Q9UPV9 953 aa13.36□□□□□ -0.27
CDC42SE1-207ENST00000540998 IQGAP1P46940 1657 aa13.36□□□□□ -0.27
CDC42SE1-207ENST00000540998 INSRP06213 1382 aa13.36□□□□□ -0.27
CDC42SE1-207ENST00000540998 DUOX2Q9NRD8 1548 aa13.36□□□□□ -0.27
CDC42SE1-207ENST00000540998 EIF3AQ14152 1382 aaKnown RBP13.35□□□□□ -0.27
CDC42SE1-207ENST00000540998 TMEM132EQ6IEE7 984 aa13.35□□□□□ -0.27
CDC42SE1-207ENST00000540998 PIK3C2GO75747 1445 aa13.35□□□□□ -0.27
CDC42SE1-207ENST00000540998 CLTCL1P53675 1640 aa13.35□□□□□ -0.27
CDC42SE1-207ENST00000540998 EFCAB2Q5VUJ9 269 aa13.34□□□□□ -0.27
CDC42SE1-207ENST00000540998 CDCA8Q53HL2 280 aa13.33□□□□□ -0.28
CDC42SE1-207ENST00000540998 SYNMO15061 1565 aa13.33□□□□□ -0.28
CDC42SE1-207ENST00000540998 TCP11L2Q8N4U5 519 aa13.33□□□□□ -0.28
CDC42SE1-207ENST00000540998 ERVK-7P63135 1459 aa13.33□□□□□ -0.28
CDC42SE1-207ENST00000540998 PLXNC1O60486 1568 aa13.33□□□□□ -0.28
CDC42SE1-207ENST00000540998 SAFB2Q14151 953 aaKnown RBP eCLIP13.32□□□□□ -0.28
CDC42SE1-207ENST00000540998 GZF1Q9H116 711 aaPredicted RBP13.32□□□□□ -0.28
CDC42SE1-207ENST00000540998 MORC1Q86VD1 984 aa13.32□□□□□ -0.28
CDC42SE1-207ENST00000540998 PDZRN3Q9UPQ7 1066 aa13.32□□□□□ -0.28
CDC42SE1-207ENST00000540998 RARSP54136 660 aaKnown RBP13.31□□□□□ -0.28
CDC42SE1-207ENST00000540998 TSR2Q969E8 191 aaKnown RBP13.31□□□□□ -0.28
CDC42SE1-207ENST00000540998 CFAP65Q6ZU64 1925 aaKnown RBP13.31□□□□□ -0.28
CDC42SE1-207ENST00000540998 NSD3Q9BZ95 1437 aa13.29□□□□□ -0.28
CDC42SE1-207ENST00000540998 CGNL1Q0VF96 1302 aa13.29□□□□□ -0.28
CDC42SE1-207ENST00000540998 MTHFSP49914 203 aa13.29□□□□□ -0.28
CDC42SE1-207ENST00000540998 PLCH2O75038 1416 aa13.29□□□□□ -0.28
CDC42SE1-207ENST00000540998 CHD1O14646 1710 aa13.29□□□□□ -0.28
CDC42SE1-207ENST00000540998 CEP152O94986 1710 aa13.29□□□□□ -0.28
CDC42SE1-207ENST00000540998 SPHKAPQ2M3C7 1700 aa13.29□□□□□ -0.28
CDC42SE1-207ENST00000540998 NLRP1Q9C000 1473 aa13.28□□□□□ -0.28
CDC42SE1-207ENST00000540998 ABCC2Q92887 1545 aa13.28□□□□□ -0.28
CDC42SE1-207ENST00000540998 TBC1D2Q9BYX2 928 aa13.28□□□□□ -0.28
CDC42SE1-207ENST00000540998 PDE3AQ14432 1141 aa13.28□□□□□ -0.28
CDC42SE1-207ENST00000540998 KDM5AP29375 1690 aaKnown RBP13.28□□□□□ -0.28
CDC42SE1-207ENST00000540998 CLASP1Q7Z460 1538 aa13.28□□□□□ -0.28
CDC42SE1-207ENST00000540998 TRPM2O94759 1503 aa13.27□□□□□ -0.29
CDC42SE1-207ENST00000540998 SCAPERQ9BY12 1400 aa13.26□□□□□ -0.29
CDC42SE1-207ENST00000540998 MFAP1P55081 439 aaKnown RBP13.26□□□□□ -0.29
CDC42SE1-207ENST00000540998 ABCC1P33527 1531 aa13.26□□□□□ -0.29
CDC42SE1-207ENST00000540998 U2AF1L5P0DN76 240 aaPredicted RBP13.25□□□□□ -0.29
CDC42SE1-207ENST00000540998 U2AF1Q01081 240 aaKnown RBP eCLIP13.25□□□□□ -0.29
CDC42SE1-207ENST00000540998 PANK2Q9BZ23 570 aa13.25□□□□□ -0.29
CDC42SE1-207ENST00000540998 ANTXR1Q9H6X2 564 aa13.25□□□□□ -0.29
CDC42SE1-207ENST00000540998 ABCA6Q8N139 1617 aa13.25□□□□□ -0.29
CDC42SE1-207ENST00000540998 RRAGDQ9NQL2 400 aaPredicted RBP13.24□□□□□ -0.29
CDC42SE1-207ENST00000540998 MAPK8IP3Q9UPT6 1336 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms