RNA–Protein interactions for RNA: ENST00000540891.1

CD9-209, Transcript of CD9 molecule, humanhuman

TSL 3

Gene CD9, Length 642 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD9-209ENST00000540891 FOXD1Q16676 465 aa25.2■■□□□ 1.62
CD9-209ENST00000540891 ACIN1Q9UKV3 1341 aaKnown RBP25.16■■□□□ 1.62
CD9-209ENST00000540891 IQSEC2Q5JU85 1478 aa25.16■■□□□ 1.62
CD9-209ENST00000540891 CPS1P31327 1500 aa25.16■■□□□ 1.62
CD9-209ENST00000540891 STRCP1A6NGW2 1772 aa25.16■■□□□ 1.62
CD9-209ENST00000540891 PLEKHG1Q9ULL1 1385 aa25.15■■□□□ 1.62
CD9-209ENST00000540891 HDGFP51858 240 aaKnown RBP25.13■■□□□ 1.61
CD9-209ENST00000540891 NUTM2DQ5VT03 806 aaPredicted RBP25.13■■□□□ 1.61
CD9-209ENST00000540891 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.12■■□□□ 1.61
CD9-209ENST00000540891 SLC26A8Q96RN1 970 aa25.12■■□□□ 1.61
CD9-209ENST00000540891 PPP1R15AO75807 674 aaPredicted RBP25.11■■□□□ 1.61
CD9-209ENST00000540891 SENP3Q9H4L4 574 aaPredicted RBP25.1■■□□□ 1.61
CD9-209ENST00000540891 HRCP23327 699 aa25.09■■□□□ 1.61
CD9-209ENST00000540891 KIF1BO60333 1816 aa25.09■■□□□ 1.61
CD9-209ENST00000540891 NEXMIFQ5QGS0 1516 aa25.07■■□□□ 1.6
CD9-209ENST00000540891 ADAMTS13Q76LX8 1427 aa25.07■■□□□ 1.6
CD9-209ENST00000540891 ZNF326Q5BKZ1 582 aaKnown RBP25.07■■□□□ 1.6
CD9-209ENST00000540891 BCANQ96GW7 911 aa25.06■■□□□ 1.6
CD9-209ENST00000540891 LRRC7Q96NW7 1537 aa25.06■■□□□ 1.6
CD9-209ENST00000540891 CCDC144AA2RUR9 1427 aa25.04■■□□□ 1.6
CD9-209ENST00000540891 TBX22Q9Y458 520 aa25.02■■□□□ 1.6
CD9-209ENST00000540891 NWD1Q149M9 1564 aa25.01■■□□□ 1.59
CD9-209ENST00000540891 NRXN3Q9Y4C0 1643 aa25.01■■□□□ 1.59
CD9-209ENST00000540891 KCNA6P17658 529 aa25.01■■□□□ 1.59
CD9-209ENST00000540891 SPATA31E1Q6ZUB1 1445 aa25■■□□□ 1.59
CD9-209ENST00000540891 SETBP1Q9Y6X0 1596 aa25■■□□□ 1.59
CD9-209ENST00000540891 DIP2AQ14689 1571 aa24.99■■□□□ 1.59
CD9-209ENST00000540891 RPGRIP1LQ68CZ1 1315 aa24.96■■□□□ 1.59
CD9-209ENST00000540891 CHD2O14647 1828 aaKnown RBP24.96■■□□□ 1.59
CD9-209ENST00000540891 UBAP1LF5GYI3 381 aa24.95■■□□□ 1.58
CD9-209ENST00000540891 XIRP1Q702N8 1843 aaKnown RBP24.95■■□□□ 1.58
CD9-209ENST00000540891 NKTRP30414 1462 aaKnown RBP24.95■■□□□ 1.58
CD9-209ENST00000540891 ANKRD30BQ9BXX2 1392 aa24.94■■□□□ 1.58
CD9-209ENST00000540891 PPLO60437 1756 aa24.94■■□□□ 1.58
CD9-209ENST00000540891 ALKQ9UM73 1620 aa24.94■■□□□ 1.58
CD9-209ENST00000540891 PIK3R4Q99570 1358 aa24.93■■□□□ 1.58
CD9-209ENST00000540891 PTPRUQ92729 1446 aa24.92■■□□□ 1.58
CD9-209ENST00000540891 TMEM94Q12767 1356 aa24.92■■□□□ 1.58
CD9-209ENST00000540891 RGL3Q3MIN7 710 aa24.91■■□□□ 1.58
CD9-209ENST00000540891 VGFO15240 615 aaPredicted RBP24.9■■□□□ 1.58
CD9-209ENST00000540891 RBM33Q96EV2 1170 aaKnown RBP24.89■■□□□ 1.58
CD9-209ENST00000540891 METP08581 1390 aa24.89■■□□□ 1.57
CD9-209ENST00000540891 IFT172Q9UG01 1749 aa24.89■■□□□ 1.57
CD9-209ENST00000540891 PROSER2Q86WR7 435 aaPredicted RBP24.88■■□□□ 1.57
CD9-209ENST00000540891 TOM1O60784 492 aa24.86■■□□□ 1.57
CD9-209ENST00000540891 SETD1AO15047 1707 aaKnown RBP24.86■■□□□ 1.57
CD9-209ENST00000540891 ADGRF5Q8IZF2 1346 aa24.86■■□□□ 1.57
CD9-209ENST00000540891 XRN1Q8IZH2 1706 aaKnown RBP24.84■■□□□ 1.57
CD9-209ENST00000540891 AMOTL2Q9Y2J4 779 aa24.84■■□□□ 1.57
CD9-209ENST00000540891 TRIM26Q12899 539 aaPredicted RBP24.82■■□□□ 1.56
CD9-209ENST00000540891 PIP4K2BP78356 416 aa24.8■■□□□ 1.56
CD9-209ENST00000540891 PIK3C2GO75747 1445 aa24.78■■□□□ 1.56
CD9-209ENST00000540891 NCOA3Q9Y6Q9 1424 aa24.78■■□□□ 1.56
CD9-209ENST00000540891 MYOM2P54296 1465 aa24.77■■□□□ 1.56
CD9-209ENST00000540891 NRXN1Q9ULB1 1477 aa24.77■■□□□ 1.56
CD9-209ENST00000540891 SCAF1Q9H7N4 1312 aaKnown RBP24.76■■□□□ 1.55
CD9-209ENST00000540891 MSH6P52701 1360 aa24.75■■□□□ 1.55
CD9-209ENST00000540891 ASXL1Q8IXJ9 1541 aa24.72■■□□□ 1.55
CD9-209ENST00000540891 PRAG1Q86YV5 1406 aa24.72■■□□□ 1.55
CD9-209ENST00000540891 DHX57Q6P158 1386 aaKnown RBP24.7■■□□□ 1.55
CD9-209ENST00000540891 PTCH1Q13635 1447 aa24.69■■□□□ 1.54
CD9-209ENST00000540891 ROBO2Q9HCK4 1378 aa24.68■■□□□ 1.54
CD9-209ENST00000540891 HSPA1LP34931 641 aa24.68■■□□□ 1.54
CD9-209ENST00000540891 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.68■■□□□ 1.54
CD9-209ENST00000540891 C14orf37Q86TY3 774 aa24.67■■□□□ 1.54
CD9-209ENST00000540891 C19orf44Q9H6X5 657 aa24.67■■□□□ 1.54
CD9-209ENST00000540891 C14orf93Q9H972 538 aaKnown RBP24.67■■□□□ 1.54
CD9-209ENST00000540891 FAM135BQ49AJ0 1406 aa24.66■■□□□ 1.54
CD9-209ENST00000540891 CFAP70Q5T0N1 1121 aa24.65■■□□□ 1.54
CD9-209ENST00000540891 TMEM132EQ6IEE7 984 aa24.65■■□□□ 1.54
CD9-209ENST00000540891 DCAF11Q8TEB1 546 aa24.65■■□□□ 1.54
CD9-209ENST00000540891 LRPPRCP42704 1394 aaKnown RBP24.64■■□□□ 1.53
CD9-209ENST00000540891 TECPR2O15040 1411 aa24.63■■□□□ 1.53
CD9-209ENST00000540891 SLAIN2Q9P270 581 aa24.63■■□□□ 1.53
CD9-209ENST00000540891 KDM2AQ9Y2K7 1162 aa24.63■■□□□ 1.53
CD9-209ENST00000540891 ADGRL3Q9HAR2 1447 aa24.62■■□□□ 1.53
CD9-209ENST00000540891 LAMC1P11047 1609 aa24.62■■□□□ 1.53
CD9-209ENST00000540891 NALCNQ8IZF0 1738 aa24.62■■□□□ 1.53
CD9-209ENST00000540891 ROBO1Q9Y6N7 1651 aa24.62■■□□□ 1.53
CD9-209ENST00000540891 DCCP43146 1447 aa24.61■■□□□ 1.53
CD9-209ENST00000540891 CADPS2Q86UW7 1296 aa24.61■■□□□ 1.53
CD9-209ENST00000540891 ABCC11Q96J66 1382 aa24.6■■□□□ 1.53
CD9-209ENST00000540891 STAC3Q96MF2 364 aa24.6■■□□□ 1.53
CD9-209ENST00000540891 YTHDC2Q9H6S0 1430 aaKnown RBP24.6■■□□□ 1.53
CD9-209ENST00000540891 KNDC1Q76NI1 1749 aa24.59■■□□□ 1.53
CD9-209ENST00000540891 ATF3P18847 181 aa24.59■■□□□ 1.53
CD9-209ENST00000540891 SIN3AQ96ST3 1273 aa24.59■■□□□ 1.53
CD9-209ENST00000540891 STK26Q9P289 416 aa24.59■■□□□ 1.53
CD9-209ENST00000540891 ADGRB1O14514 1584 aa24.58■■□□□ 1.52
CD9-209ENST00000540891 MST1RQ04912 1400 aa24.55■■□□□ 1.52
CD9-209ENST00000540891 PLEKHH1Q9ULM0 1364 aa24.54■■□□□ 1.52
CD9-209ENST00000540891 WAPLQ7Z5K2 1190 aa24.54■■□□□ 1.52
CD9-209ENST00000540891 SIRT1Q96EB6 747 aa24.51■■□□□ 1.51
CD9-209ENST00000540891 L3MBTL2Q969R5 705 aa24.49■■□□□ 1.51
CD9-209ENST00000540891 NEUROD1Q13562 356 aa24.48■■□□□ 1.51
CD9-209ENST00000540891 BRINP3Q76B58 766 aa24.48■■□□□ 1.51
CD9-209ENST00000540891 CDC42BPGQ6DT37 1551 aa24.47■■□□□ 1.51
CD9-209ENST00000540891 DLC1Q96QB1 1528 aa24.47■■□□□ 1.51
CD9-209ENST00000540891 C1orf167Q5SNV9 1468 aa24.46■■□□□ 1.51
CD9-209ENST00000540891 AHDC1Q5TGY3 1603 aaPredicted RBP24.44■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms