RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 ANKRD30BQ9BXX2 1392 aa17.88■□□□□ 0.45
COLCA1-204ENST00000540738 ZNF692Q9BU19 519 aaPredicted RBP17.88■□□□□ 0.45
COLCA1-204ENST00000540738 SUPT6HQ7KZ85 1726 aaKnown RBP17.88■□□□□ 0.45
COLCA1-204ENST00000540738 DDX58O95786 925 aaKnown RBP17.88■□□□□ 0.45
COLCA1-204ENST00000540738 SLC26A8Q96RN1 970 aa17.88■□□□□ 0.45
COLCA1-204ENST00000540738 ARHGEF11O15085 1522 aa17.87■□□□□ 0.45
COLCA1-204ENST00000540738 HMGB2P26583 209 aaKnown RBP17.87■□□□□ 0.45
COLCA1-204ENST00000540738 KIF14Q15058 1648 aa17.87■□□□□ 0.45
COLCA1-204ENST00000540738 CDK13Q14004 1512 aaKnown RBP17.86■□□□□ 0.45
COLCA1-204ENST00000540738 PMFBP1Q8TBY8 1022 aa17.86■□□□□ 0.45
COLCA1-204ENST00000540738 NUTM2GQ5VZR2 741 aa17.86■□□□□ 0.45
COLCA1-204ENST00000540738 TULP1O00294 542 aaPredicted RBP17.85■□□□□ 0.45
COLCA1-204ENST00000540738 PIP4K2BP78356 416 aa17.85■□□□□ 0.45
COLCA1-204ENST00000540738 DAPK1P53355 1430 aa17.85■□□□□ 0.45
COLCA1-204ENST00000540738 SMG6Q86US8 1419 aaKnown RBP17.85■□□□□ 0.45
COLCA1-204ENST00000540738 KIAA1107Q9UPP5 1409 aa17.85■□□□□ 0.45
COLCA1-204ENST00000540738 HSP90AB1P08238 724 aaKnown RBP17.85■□□□□ 0.45
COLCA1-204ENST00000540738 NUTM2BA6NNL0 878 aaPredicted RBP17.83■□□□□ 0.45
COLCA1-204ENST00000540738 NUTM2EB1AL46 878 aaPredicted RBP17.83■□□□□ 0.45
COLCA1-204ENST00000540738 NUTM2AQ8IVF1 878 aaPredicted RBP17.83■□□□□ 0.45
COLCA1-204ENST00000540738 RRP7AQ9Y3A4 280 aaKnown RBP17.83■□□□□ 0.45
COLCA1-204ENST00000540738 TIAM1Q13009 1591 aa17.83■□□□□ 0.44
COLCA1-204ENST00000540738 GGNBP2Q9H3C7 697 aa17.82■□□□□ 0.44
COLCA1-204ENST00000540738 ERBINQ96RT1 1412 aa17.81■□□□□ 0.44
COLCA1-204ENST00000540738 EIF2S2P20042 333 aaKnown RBP17.81■□□□□ 0.44
COLCA1-204ENST00000540738 E9PSI1 815 aa17.81■□□□□ 0.44
COLCA1-204ENST00000540738 STRN4Q9NRL3 753 aa17.81■□□□□ 0.44
COLCA1-204ENST00000540738 PLEKHO1Q53GL0 409 aaPredicted RBP17.8■□□□□ 0.44
COLCA1-204ENST00000540738 GNL2Q13823 731 aaKnown RBP17.8■□□□□ 0.44
COLCA1-204ENST00000540738 RTEL1-TNFRSF6BF6WH68 1400 aa17.8■□□□□ 0.44
COLCA1-204ENST00000540738 FANCAO15360 1455 aa17.8■□□□□ 0.44
COLCA1-204ENST00000540738 USP35Q9P2H5 1018 aa17.79■□□□□ 0.44
COLCA1-204ENST00000540738 TATP17735 454 aaPredicted RBP17.79■□□□□ 0.44
COLCA1-204ENST00000540738 GOLGA6L4A6NEF3 574 aa17.79■□□□□ 0.44
COLCA1-204ENST00000540738 KLHL34Q8N239 644 aa17.78■□□□□ 0.44
COLCA1-204ENST00000540738 PRDM11Q9NQV5 511 aa17.78■□□□□ 0.44
COLCA1-204ENST00000540738 RIPK4P57078 832 aa17.78■□□□□ 0.44
COLCA1-204ENST00000540738 HSCBQ8IWL3 235 aa17.78■□□□□ 0.44
COLCA1-204ENST00000540738 CDK19Q9BWU1 502 aa17.78■□□□□ 0.44
COLCA1-204ENST00000540738 C9orf78Q9NZ63 289 aaPredicted RBP17.78■□□□□ 0.44
COLCA1-204ENST00000540738 ROCK1Q13464 1354 aa17.78■□□□□ 0.44
COLCA1-204ENST00000540738 ELL2O00472 640 aaPredicted RBP17.78■□□□□ 0.44
COLCA1-204ENST00000540738 LRRFIP1Q32MZ4 808 aaKnown RBP17.78■□□□□ 0.44
COLCA1-204ENST00000540738 NOL10Q9BSC4 688 aaKnown RBP17.78■□□□□ 0.44
COLCA1-204ENST00000540738 GAS2L2Q8NHY3 880 aa17.77■□□□□ 0.44
COLCA1-204ENST00000540738 HSP90B1P14625 803 aaKnown RBP17.77■□□□□ 0.44
COLCA1-204ENST00000540738 GNAI1P63096 354 aa17.76■□□□□ 0.43
COLCA1-204ENST00000540738 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.76■□□□□ 0.43
COLCA1-204ENST00000540738 ERICH6BQ5W0A0 696 aa17.76■□□□□ 0.43
COLCA1-204ENST00000540738 CLUAP1Q96AJ1 413 aa17.76■□□□□ 0.43
COLCA1-204ENST00000540738 B4GALNT3Q6L9W6 998 aa17.76■□□□□ 0.43
COLCA1-204ENST00000540738 TOM1L2Q6ZVM7 507 aa17.76■□□□□ 0.43
COLCA1-204ENST00000540738 RUNDC1Q96C34 613 aa17.75■□□□□ 0.43
COLCA1-204ENST00000540738 TRIM6-TRIM34B2RNG4 842 aa17.75■□□□□ 0.43
COLCA1-204ENST00000540738 TSPYL4Q9UJ04 414 aa17.75■□□□□ 0.43
COLCA1-204ENST00000540738 PRKRIP1Q9H875 184 aaPredicted RBP17.75■□□□□ 0.43
COLCA1-204ENST00000540738 ATAD2Q6PL18 1390 aa17.74■□□□□ 0.43
COLCA1-204ENST00000540738 API5Q9BZZ5 524 aaKnown RBP17.74■□□□□ 0.43
COLCA1-204ENST00000540738 ZKSCAN2Q63HK3 967 aa17.73■□□□□ 0.43
COLCA1-204ENST00000540738 CAMSAP2Q08AD1 1489 aa17.73■□□□□ 0.43
COLCA1-204ENST00000540738 AMOTL1Q8IY63 956 aa17.72■□□□□ 0.43
COLCA1-204ENST00000540738 ASXL2Q76L83 1435 aa17.72■□□□□ 0.43
COLCA1-204ENST00000540738 APAF1O14727 1248 aa17.71■□□□□ 0.43
COLCA1-204ENST00000540738 HMOX1P09601 288 aa17.71■□□□□ 0.43
COLCA1-204ENST00000540738 RBM33Q96EV2 1170 aaKnown RBP17.71■□□□□ 0.43
COLCA1-204ENST00000540738 BIVM-ERCC5R4GMW8 1640 aa17.71■□□□□ 0.43
COLCA1-204ENST00000540738 VPS37DQ86XT2 251 aa17.7■□□□□ 0.42
COLCA1-204ENST00000540738 CABP1Q9NZU7 370 aa17.7■□□□□ 0.42
COLCA1-204ENST00000540738 SPG7Q9UQ90 795 aa17.7■□□□□ 0.42
COLCA1-204ENST00000540738 TPRNQ4KMQ1 711 aa17.7■□□□□ 0.42
COLCA1-204ENST00000540738 TRIM34Q9BYJ4 488 aa17.7■□□□□ 0.42
COLCA1-204ENST00000540738 TOMM22Q9NS69 142 aa17.69■□□□□ 0.42
COLCA1-204ENST00000540738 KCNH5Q8NCM2 988 aa17.69■□□□□ 0.42
COLCA1-204ENST00000540738 FKBP5Q13451 457 aaPredicted RBP17.69■□□□□ 0.42
COLCA1-204ENST00000540738 CEBPAP49715 358 aaPredicted RBP17.68■□□□□ 0.42
COLCA1-204ENST00000540738 CCDC61Q9Y6R9 512 aa17.68■□□□□ 0.42
COLCA1-204ENST00000540738 CCDC7Q96M83 1385 aa17.68■□□□□ 0.42
COLCA1-204ENST00000540738 NBR1Q14596 966 aa17.67■□□□□ 0.42
COLCA1-204ENST00000540738 PCF11O94913 1555 aaKnown RBP17.67■□□□□ 0.42
COLCA1-204ENST00000540738 RIC3Q7Z5B4 369 aa17.67■□□□□ 0.42
COLCA1-204ENST00000540738 LRPPRCP42704 1394 aaKnown RBP17.66■□□□□ 0.42
COLCA1-204ENST00000540738 KIF7Q2M1P5 1343 aa17.66■□□□□ 0.42
COLCA1-204ENST00000540738 GOLGA6L6A8MZA4 724 aa17.66■□□□□ 0.42
COLCA1-204ENST00000540738 HTATSF1O43719 755 aaKnown RBP17.66■□□□□ 0.42
COLCA1-204ENST00000540738 RBM42Q9BTD8 480 aaKnown RBP17.66■□□□□ 0.42
COLCA1-204ENST00000540738 DHX29Q7Z478 1369 aaKnown RBP17.66■□□□□ 0.42
COLCA1-204ENST00000540738 CLSTN1O94985 981 aa17.66■□□□□ 0.42
COLCA1-204ENST00000540738 MTHFSP49914 203 aa17.65■□□□□ 0.42
COLCA1-204ENST00000540738 TNRQ92752 1358 aa17.65■□□□□ 0.42
COLCA1-204ENST00000540738 NECTIN2Q92692 538 aa17.64■□□□□ 0.41
COLCA1-204ENST00000540738 KIF6Q6ZMV9 814 aa17.64■□□□□ 0.41
COLCA1-204ENST00000540738 CHMP4CQ96CF2 233 aa17.64■□□□□ 0.41
COLCA1-204ENST00000540738 NBPF1Q3BBV0 1214 aa17.64■□□□□ 0.41
COLCA1-204ENST00000540738 PNISRQ8TF01 805 aaKnown RBP17.64■□□□□ 0.41
COLCA1-204ENST00000540738 NRDCO43847 1150 aa17.63■□□□□ 0.41
COLCA1-204ENST00000540738 NUDT16Q96DE0 195 aaKnown RBP17.63■□□□□ 0.41
COLCA1-204ENST00000540738 WDR7Q9Y4E6 1490 aa17.63■□□□□ 0.41
COLCA1-204ENST00000540738 CCDC34Q96HJ3 373 aa17.63■□□□□ 0.41
COLCA1-204ENST00000540738 AMOTL2Q9Y2J4 779 aa17.63■□□□□ 0.41
COLCA1-204ENST00000540738 HSP90AB4PQ58FF6 505 aa17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms