RNA–Protein interactions for RNA: ENST00000540699.1

ATL3-204, Transcript of atlastin GTPase 3, humanhuman

TSL 3

Gene ATL3, Length 714 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3-204ENST00000540699 ARHGAP23Q9P227 1491 aa15.59■□□□□ 0.09
ATL3-204ENST00000540699 THEMISQ8N1K5 641 aaPredicted RBP15.59■□□□□ 0.09
ATL3-204ENST00000540699 ZEB1P37275 1124 aaPredicted RBP15.58■□□□□ 0.08
ATL3-204ENST00000540699 ANKLE2Q86XL3 938 aa15.58■□□□□ 0.08
ATL3-204ENST00000540699 NPHP4O75161 1426 aaPredicted RBP15.58■□□□□ 0.08
ATL3-204ENST00000540699 STRCP1A6NGW2 1772 aa15.57■□□□□ 0.08
ATL3-204ENST00000540699 CLSPNQ9HAW4 1339 aa15.55■□□□□ 0.08
ATL3-204ENST00000540699 FOXD1Q16676 465 aa15.55■□□□□ 0.08
ATL3-204ENST00000540699 TMEM2Q9UHN6 1383 aa15.54■□□□□ 0.08
ATL3-204ENST00000540699 ANKRD30BQ9BXX2 1392 aa15.53■□□□□ 0.08
ATL3-204ENST00000540699 ZFYVE9O95405 1425 aa15.52■□□□□ 0.08
ATL3-204ENST00000540699 TOM1O60784 492 aa15.52■□□□□ 0.08
ATL3-204ENST00000540699 ALKQ9UM73 1620 aa15.52■□□□□ 0.08
ATL3-204ENST00000540699 SCAF11Q99590 1463 aaKnown RBP15.52■□□□□ 0.07
ATL3-204ENST00000540699 CCDC144AA2RUR9 1427 aa15.51■□□□□ 0.07
ATL3-204ENST00000540699 HSPA1LP34931 641 aa15.5■□□□□ 0.07
ATL3-204ENST00000540699 STAG3Q9UJ98 1225 aa15.5■□□□□ 0.07
ATL3-204ENST00000540699 SPATA31E1Q6ZUB1 1445 aa15.5■□□□□ 0.07
ATL3-204ENST00000540699 IFT172Q9UG01 1749 aa15.49■□□□□ 0.07
ATL3-204ENST00000540699 PPLO60437 1756 aa15.49■□□□□ 0.07
ATL3-204ENST00000540699 NEXMIFQ5QGS0 1516 aa15.48■□□□□ 0.07
ATL3-204ENST00000540699 LTKP29376 864 aa15.48■□□□□ 0.07
ATL3-204ENST00000540699 PIP4K2BP78356 416 aa15.48■□□□□ 0.07
ATL3-204ENST00000540699 RIMS2Q9UQ26 1411 aa15.48■□□□□ 0.07
ATL3-204ENST00000540699 LRRC7Q96NW7 1537 aa15.48■□□□□ 0.07
ATL3-204ENST00000540699 SCAF1Q9H7N4 1312 aaKnown RBP15.47■□□□□ 0.07
ATL3-204ENST00000540699 XIRP1Q702N8 1843 aaKnown RBP15.46■□□□□ 0.07
ATL3-204ENST00000540699 MED1Q15648 1581 aaPredicted RBP15.45■□□□□ 0.06
ATL3-204ENST00000540699 CHGAP10645 457 aaKnown RBP15.45■□□□□ 0.06
ATL3-204ENST00000540699 TXNDC2Q86VQ3 553 aa15.45■□□□□ 0.06
ATL3-204ENST00000540699 EID1Q9Y6B2 187 aa15.45■□□□□ 0.06
ATL3-204ENST00000540699 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.43■□□□□ 0.06
ATL3-204ENST00000540699 PLEKHG1Q9ULL1 1385 aa15.43■□□□□ 0.06
ATL3-204ENST00000540699 RPGRIP1LQ68CZ1 1315 aa15.43■□□□□ 0.06
ATL3-204ENST00000540699 HDGFP51858 240 aaKnown RBP15.42■□□□□ 0.06
ATL3-204ENST00000540699 NRXN3Q9Y4C0 1643 aa15.42■□□□□ 0.06
ATL3-204ENST00000540699 SETBP1Q9Y6X0 1596 aa15.41■□□□□ 0.06
ATL3-204ENST00000540699 DIP2AQ14689 1571 aa15.41■□□□□ 0.06
ATL3-204ENST00000540699 ZNF326Q5BKZ1 582 aaKnown RBP15.39■□□□□ 0.05
ATL3-204ENST00000540699 SETD1AO15047 1707 aaKnown RBP15.38■□□□□ 0.05
ATL3-204ENST00000540699 ADAMTS13Q76LX8 1427 aa15.37■□□□□ 0.05
ATL3-204ENST00000540699 PHF23Q9BUL5 403 aaPredicted RBP15.37■□□□□ 0.05
ATL3-204ENST00000540699 MYOM2P54296 1465 aa15.37■□□□□ 0.05
ATL3-204ENST00000540699 CHD2O14647 1828 aaKnown RBP15.36■□□□□ 0.05
ATL3-204ENST00000540699 NRXN1Q9ULB1 1477 aa15.36■□□□□ 0.05
ATL3-204ENST00000540699 PPP1R15AO75807 674 aaPredicted RBP15.36■□□□□ 0.05
ATL3-204ENST00000540699 VGFO15240 615 aaPredicted RBP15.35■□□□□ 0.05
ATL3-204ENST00000540699 NWD1Q149M9 1564 aa15.34■□□□□ 0.05
ATL3-204ENST00000540699 RGL3Q3MIN7 710 aa15.34■□□□□ 0.05
ATL3-204ENST00000540699 NUTM2DQ5VT03 806 aaPredicted RBP15.34■□□□□ 0.05
ATL3-204ENST00000540699 TBX22Q9Y458 520 aa15.33■□□□□ 0.04
ATL3-204ENST00000540699 PIK3R4Q99570 1358 aa15.32■□□□□ 0.04
ATL3-204ENST00000540699 PIK3C2GO75747 1445 aa15.32■□□□□ 0.04
ATL3-204ENST00000540699 LAMC1P11047 1609 aa15.32■□□□□ 0.04
ATL3-204ENST00000540699 STAC3Q96MF2 364 aa15.31■□□□□ 0.04
ATL3-204ENST00000540699 SLC26A8Q96RN1 970 aa15.31■□□□□ 0.04
ATL3-204ENST00000540699 SIN3AQ96ST3 1273 aa15.31■□□□□ 0.04
ATL3-204ENST00000540699 ADGRF5Q8IZF2 1346 aa15.31■□□□□ 0.04
ATL3-204ENST00000540699 XRN1Q8IZH2 1706 aaKnown RBP15.3■□□□□ 0.04
ATL3-204ENST00000540699 NKTRP30414 1462 aaKnown RBP15.29■□□□□ 0.04
ATL3-204ENST00000540699 SENP3Q9H4L4 574 aaPredicted RBP15.29■□□□□ 0.04
ATL3-204ENST00000540699 TMEM94Q12767 1356 aa15.28■□□□□ 0.04
ATL3-204ENST00000540699 ROBO1Q9Y6N7 1651 aa15.28■□□□□ 0.04
ATL3-204ENST00000540699 KIAA1210Q9ULL0 1709 aa15.27■□□□□ 0.04
ATL3-204ENST00000540699 KCNA6P17658 529 aa15.27■□□□□ 0.04
ATL3-204ENST00000540699 TIMELESSQ9UNS1 1208 aa15.27■□□□□ 0.04
ATL3-204ENST00000540699 PRAG1Q86YV5 1406 aa15.26■□□□□ 0.03
ATL3-204ENST00000540699 PTPRUQ92729 1446 aa15.26■□□□□ 0.03
ATL3-204ENST00000540699 BCANQ96GW7 911 aa15.26■□□□□ 0.03
ATL3-204ENST00000540699 ASXL1Q8IXJ9 1541 aa15.26■□□□□ 0.03
ATL3-204ENST00000540699 FAM135BQ49AJ0 1406 aa15.26■□□□□ 0.03
ATL3-204ENST00000540699 METP08581 1390 aa15.25■□□□□ 0.03
ATL3-204ENST00000540699 DCAF11Q8TEB1 546 aa15.25■□□□□ 0.03
ATL3-204ENST00000540699 KNDC1Q76NI1 1749 aa15.25■□□□□ 0.03
ATL3-204ENST00000540699 NEUROD1Q13562 356 aa15.23■□□□□ 0.03
ATL3-204ENST00000540699 L3MBTL2Q969R5 705 aa15.23■□□□□ 0.03
ATL3-204ENST00000540699 C14orf93Q9H972 538 aaKnown RBP15.23■□□□□ 0.03
ATL3-204ENST00000540699 RGS17Q9UGC6 210 aaPredicted RBP15.23■□□□□ 0.03
ATL3-204ENST00000540699 PROSER2Q86WR7 435 aaPredicted RBP15.22■□□□□ 0.03
ATL3-204ENST00000540699 ADGRB1O14514 1584 aa15.22■□□□□ 0.03
ATL3-204ENST00000540699 RBM33Q96EV2 1170 aaKnown RBP15.21■□□□□ 0.03
ATL3-204ENST00000540699 TECPR2O15040 1411 aa15.2■□□□□ 0.02
ATL3-204ENST00000540699 KDM2AQ9Y2K7 1162 aa15.2■□□□□ 0.02
ATL3-204ENST00000540699 PHLPP1O60346 1717 aa15.2■□□□□ 0.02
ATL3-204ENST00000540699 PTCH1Q13635 1447 aa15.19■□□□□ 0.02
ATL3-204ENST00000540699 TRPM1Q7Z4N2 1603 aa15.19■□□□□ 0.02
ATL3-204ENST00000540699 AMOTL2Q9Y2J4 779 aa15.19■□□□□ 0.02
ATL3-204ENST00000540699 LRPPRCP42704 1394 aaKnown RBP15.19■□□□□ 0.02
ATL3-204ENST00000540699 TONSLQ96HA7 1378 aa15.19■□□□□ 0.02
ATL3-204ENST00000540699 NCOA3Q9Y6Q9 1424 aa15.18■□□□□ 0.02
ATL3-204ENST00000540699 CFAP70Q5T0N1 1121 aa15.18■□□□□ 0.02
ATL3-204ENST00000540699 MSH6P52701 1360 aa15.18■□□□□ 0.02
ATL3-204ENST00000540699 YTHDC2Q9H6S0 1430 aaKnown RBP15.17■□□□□ 0.02
ATL3-204ENST00000540699 ABCC11Q96J66 1382 aa15.16■□□□□ 0.02
ATL3-204ENST00000540699 DLC1Q96QB1 1528 aa15.16■□□□□ 0.02
ATL3-204ENST00000540699 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.15■□□□□ 0.02
ATL3-204ENST00000540699 TMEM132EQ6IEE7 984 aa15.14■□□□□ 0.01
ATL3-204ENST00000540699 NALCNQ8IZF0 1738 aa15.14■□□□□ 0.01
ATL3-204ENST00000540699 COL16A1Q07092 1604 aaPredicted RBP15.14■□□□□ 0.01
ATL3-204ENST00000540699 ROBO2Q9HCK4 1378 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms