RNA–Protein interactions for RNA: ENST00000540230.5

UBE3B-212, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,541 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-212ENST00000540230 SENP3Q9H4L4 574 aaPredicted RBP22.56■■□□□ 1.2
UBE3B-212ENST00000540230 CPS1P31327 1500 aa22.56■■□□□ 1.2
UBE3B-212ENST00000540230 FOXD1Q16676 465 aa22.54■■□□□ 1.2
UBE3B-212ENST00000540230 NUTM2DQ5VT03 806 aaPredicted RBP22.53■■□□□ 1.2
UBE3B-212ENST00000540230 RAB3GAP2Q9H2M9 1393 aa22.53■■□□□ 1.2
UBE3B-212ENST00000540230 SLC26A8Q96RN1 970 aa22.52■■□□□ 1.19
UBE3B-212ENST00000540230 PLEKHG1Q9ULL1 1385 aa22.51■■□□□ 1.19
UBE3B-212ENST00000540230 MPHOSPH9Q99550 1183 aa22.49■■□□□ 1.19
UBE3B-212ENST00000540230 KIF1BO60333 1816 aa22.49■■□□□ 1.19
UBE3B-212ENST00000540230 PPP1R15AO75807 674 aaPredicted RBP22.48■■□□□ 1.19
UBE3B-212ENST00000540230 LRRC7Q96NW7 1537 aa22.48■■□□□ 1.19
UBE3B-212ENST00000540230 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.46■■□□□ 1.19
UBE3B-212ENST00000540230 BCANQ96GW7 911 aa22.46■■□□□ 1.19
UBE3B-212ENST00000540230 NEXMIFQ5QGS0 1516 aa22.45■■□□□ 1.18
UBE3B-212ENST00000540230 ADAMTS13Q76LX8 1427 aa22.44■■□□□ 1.18
UBE3B-212ENST00000540230 HDGFP51858 240 aaKnown RBP22.44■■□□□ 1.18
UBE3B-212ENST00000540230 XIRP1Q702N8 1843 aaKnown RBP22.44■■□□□ 1.18
UBE3B-212ENST00000540230 ZNF326Q5BKZ1 582 aaKnown RBP22.43■■□□□ 1.18
UBE3B-212ENST00000540230 NWD1Q149M9 1564 aa22.42■■□□□ 1.18
UBE3B-212ENST00000540230 NRXN3Q9Y4C0 1643 aa22.42■■□□□ 1.18
UBE3B-212ENST00000540230 UBAP1LF5GYI3 381 aa22.41■■□□□ 1.18
UBE3B-212ENST00000540230 ALKQ9UM73 1620 aa22.4■■□□□ 1.18
UBE3B-212ENST00000540230 CHD2O14647 1828 aaKnown RBP22.39■■□□□ 1.18
UBE3B-212ENST00000540230 KCNA6P17658 529 aa22.39■■□□□ 1.17
UBE3B-212ENST00000540230 DIP2AQ14689 1571 aa22.38■■□□□ 1.17
UBE3B-212ENST00000540230 CCDC144AA2RUR9 1427 aa22.37■■□□□ 1.17
UBE3B-212ENST00000540230 TBX22Q9Y458 520 aa22.37■■□□□ 1.17
UBE3B-212ENST00000540230 SETBP1Q9Y6X0 1596 aa22.37■■□□□ 1.17
UBE3B-212ENST00000540230 ACIN1Q9UKV3 1341 aaKnown RBP22.36■■□□□ 1.17
UBE3B-212ENST00000540230 RBM33Q96EV2 1170 aaKnown RBP22.36■■□□□ 1.17
UBE3B-212ENST00000540230 PPLO60437 1756 aa22.35■■□□□ 1.17
UBE3B-212ENST00000540230 NKTRP30414 1462 aaKnown RBP22.35■■□□□ 1.17
UBE3B-212ENST00000540230 TMEM94Q12767 1356 aa22.34■■□□□ 1.17
UBE3B-212ENST00000540230 SPATA31E1Q6ZUB1 1445 aa22.33■■□□□ 1.17
UBE3B-212ENST00000540230 PTPRUQ92729 1446 aa22.32■■□□□ 1.16
UBE3B-212ENST00000540230 HRCP23327 699 aa22.31■■□□□ 1.16
UBE3B-212ENST00000540230 TOM1O60784 492 aa22.3■■□□□ 1.16
UBE3B-212ENST00000540230 PIP4K2BP78356 416 aa22.3■■□□□ 1.16
UBE3B-212ENST00000540230 PROSER2Q86WR7 435 aaPredicted RBP22.3■■□□□ 1.16
UBE3B-212ENST00000540230 IFT172Q9UG01 1749 aa22.29■■□□□ 1.16
UBE3B-212ENST00000540230 PIK3R4Q99570 1358 aa22.29■■□□□ 1.16
UBE3B-212ENST00000540230 SETD1AO15047 1707 aaKnown RBP22.28■■□□□ 1.16
UBE3B-212ENST00000540230 RGL3Q3MIN7 710 aa22.28■■□□□ 1.16
UBE3B-212ENST00000540230 METP08581 1390 aa22.28■■□□□ 1.16
UBE3B-212ENST00000540230 RPGRIP1LQ68CZ1 1315 aa22.28■■□□□ 1.16
UBE3B-212ENST00000540230 SCAF1Q9H7N4 1312 aaKnown RBP22.28■■□□□ 1.16
UBE3B-212ENST00000540230 XRN1Q8IZH2 1706 aaKnown RBP22.27■■□□□ 1.15
UBE3B-212ENST00000540230 ANKRD30BQ9BXX2 1392 aa22.26■■□□□ 1.15
UBE3B-212ENST00000540230 VGFO15240 615 aaPredicted RBP22.25■■□□□ 1.15
UBE3B-212ENST00000540230 AMOTL2Q9Y2J4 779 aa22.25■■□□□ 1.15
UBE3B-212ENST00000540230 ADGRF5Q8IZF2 1346 aa22.23■■□□□ 1.15
UBE3B-212ENST00000540230 HSPA1LP34931 641 aa22.18■■□□□ 1.14
UBE3B-212ENST00000540230 MSH6P52701 1360 aa22.17■■□□□ 1.14
UBE3B-212ENST00000540230 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.15■■□□□ 1.14
UBE3B-212ENST00000540230 PIK3C2GO75747 1445 aa22.15■■□□□ 1.14
UBE3B-212ENST00000540230 NCOA3Q9Y6Q9 1424 aa22.15■■□□□ 1.14
UBE3B-212ENST00000540230 ASXL1Q8IXJ9 1541 aa22.14■■□□□ 1.13
UBE3B-212ENST00000540230 C14orf37Q86TY3 774 aa22.12■■□□□ 1.13
UBE3B-212ENST00000540230 ROBO1Q9Y6N7 1651 aa22.12■■□□□ 1.13
UBE3B-212ENST00000540230 MYOM2P54296 1465 aa22.11■■□□□ 1.13
UBE3B-212ENST00000540230 NRXN1Q9ULB1 1477 aa22.11■■□□□ 1.13
UBE3B-212ENST00000540230 NALCNQ8IZF0 1738 aa22.1■■□□□ 1.13
UBE3B-212ENST00000540230 ROBO2Q9HCK4 1378 aa22.1■■□□□ 1.13
UBE3B-212ENST00000540230 PTCH1Q13635 1447 aa22.1■■□□□ 1.13
UBE3B-212ENST00000540230 FAM135BQ49AJ0 1406 aa22.1■■□□□ 1.13
UBE3B-212ENST00000540230 PRAG1Q86YV5 1406 aa22.09■■□□□ 1.13
UBE3B-212ENST00000540230 C19orf44Q9H6X5 657 aa22.08■■□□□ 1.13
UBE3B-212ENST00000540230 TMEM132EQ6IEE7 984 aa22.06■■□□□ 1.12
UBE3B-212ENST00000540230 SLAIN2Q9P270 581 aa22.06■■□□□ 1.12
UBE3B-212ENST00000540230 ADGRL3Q9HAR2 1447 aa22.06■■□□□ 1.12
UBE3B-212ENST00000540230 DHX57Q6P158 1386 aaKnown RBP22.06■■□□□ 1.12
UBE3B-212ENST00000540230 TRIM26Q12899 539 aaPredicted RBP22.05■■□□□ 1.12
UBE3B-212ENST00000540230 CFAP70Q5T0N1 1121 aa22.04■■□□□ 1.12
UBE3B-212ENST00000540230 DCCP43146 1447 aa22.04■■□□□ 1.12
UBE3B-212ENST00000540230 ATF3P18847 181 aa22.03■■□□□ 1.12
UBE3B-212ENST00000540230 CADPS2Q86UW7 1296 aa22.03■■□□□ 1.12
UBE3B-212ENST00000540230 LAMC1P11047 1609 aa22.03■■□□□ 1.12
UBE3B-212ENST00000540230 KNDC1Q76NI1 1749 aa22.02■■□□□ 1.12
UBE3B-212ENST00000540230 DCAF11Q8TEB1 546 aa22.02■■□□□ 1.12
UBE3B-212ENST00000540230 C14orf93Q9H972 538 aaKnown RBP22.02■■□□□ 1.12
UBE3B-212ENST00000540230 STK26Q9P289 416 aa22.02■■□□□ 1.12
UBE3B-212ENST00000540230 KDM2AQ9Y2K7 1162 aa22.02■■□□□ 1.12
UBE3B-212ENST00000540230 LRPPRCP42704 1394 aaKnown RBP22.02■■□□□ 1.12
UBE3B-212ENST00000540230 TECPR2O15040 1411 aa22.02■■□□□ 1.11
UBE3B-212ENST00000540230 MST1RQ04912 1400 aa22■■□□□ 1.11
UBE3B-212ENST00000540230 YTHDC2Q9H6S0 1430 aaKnown RBP22■■□□□ 1.11
UBE3B-212ENST00000540230 ABCC11Q96J66 1382 aa21.98■■□□□ 1.11
UBE3B-212ENST00000540230 PLEKHH1Q9ULM0 1364 aa21.98■■□□□ 1.11
UBE3B-212ENST00000540230 ADGRB1O14514 1584 aa21.97■■□□□ 1.11
UBE3B-212ENST00000540230 PHLPP1O60346 1717 aa21.97■■□□□ 1.11
UBE3B-212ENST00000540230 WAPLQ7Z5K2 1190 aa21.96■■□□□ 1.11
UBE3B-212ENST00000540230 MED1Q15648 1581 aaPredicted RBP21.95■■□□□ 1.1
UBE3B-212ENST00000540230 DISP3Q9P2K9 1392 aa21.95■■□□□ 1.1
UBE3B-212ENST00000540230 BRINP3Q76B58 766 aa21.95■■□□□ 1.1
UBE3B-212ENST00000540230 SIN3AQ96ST3 1273 aa21.94■■□□□ 1.1
UBE3B-212ENST00000540230 COL16A1Q07092 1604 aaPredicted RBP21.94■■□□□ 1.1
UBE3B-212ENST00000540230 AHDC1Q5TGY3 1603 aaPredicted RBP21.92■■□□□ 1.1
UBE3B-212ENST00000540230 CDC42BPGQ6DT37 1551 aa21.92■■□□□ 1.1
UBE3B-212ENST00000540230 C1orf167Q5SNV9 1468 aa21.91■■□□□ 1.1
UBE3B-212ENST00000540230 STAC3Q96MF2 364 aa21.9■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms