RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 IGHDP01880 384 aa14.5□□□□□ -0.09
SYNE1-237ENST00000539504 PANK1Q8TE04 598 aa14.49□□□□□ -0.09
SYNE1-237ENST00000539504 ERCC6Q03468 1493 aa14.49□□□□□ -0.09
SYNE1-237ENST00000539504 MAGI2Q86UL8 1455 aa14.49□□□□□ -0.09
SYNE1-237ENST00000539504 ZNF521Q96K83 1311 aa14.49□□□□□ -0.09
SYNE1-237ENST00000539504 CENPJQ9HC77 1338 aaPredicted RBP14.48□□□□□ -0.09
SYNE1-237ENST00000539504 PRDM15P57071 1507 aaPredicted RBP14.47□□□□□ -0.09
SYNE1-237ENST00000539504 TNNT2P45379 298 aaPredicted RBP14.47□□□□□ -0.09
SYNE1-237ENST00000539504 UPF2Q9HAU5 1272 aaKnown RBP14.47□□□□□ -0.09
SYNE1-237ENST00000539504 CGNL1Q0VF96 1302 aa14.46□□□□□ -0.09
SYNE1-237ENST00000539504 ARHGAP5Q13017 1502 aa14.46□□□□□ -0.09
SYNE1-237ENST00000539504 CLUAP1Q96AJ1 413 aa14.46□□□□□ -0.1
SYNE1-237ENST00000539504 EIF3AQ14152 1382 aaKnown RBP14.45□□□□□ -0.1
SYNE1-237ENST00000539504 ARHGEF5Q12774 1597 aa14.45□□□□□ -0.1
SYNE1-237ENST00000539504 SEC24BO95487 1268 aa14.45□□□□□ -0.1
SYNE1-237ENST00000539504 DMRT2Q9Y5R5 561 aa14.45□□□□□ -0.1
SYNE1-237ENST00000539504 POGKQ9P215 609 aa14.45□□□□□ -0.1
SYNE1-237ENST00000539504 RRP7AQ9Y3A4 280 aaKnown RBP14.45□□□□□ -0.1
SYNE1-237ENST00000539504 NKTRP30414 1462 aaKnown RBP14.45□□□□□ -0.1
SYNE1-237ENST00000539504 SYCP2Q9BX26 1530 aa14.45□□□□□ -0.1
SYNE1-237ENST00000539504 ABCA8O94911 1581 aa14.44□□□□□ -0.1
SYNE1-237ENST00000539504 WDR7Q9Y4E6 1490 aa14.44□□□□□ -0.1
SYNE1-237ENST00000539504 NUP160Q12769 1436 aa14.44□□□□□ -0.1
SYNE1-237ENST00000539504 MAPK8IP3Q9UPT6 1336 aa14.44□□□□□ -0.1
SYNE1-237ENST00000539504 SPRYD3Q8NCJ5 442 aa14.44□□□□□ -0.1
SYNE1-237ENST00000539504 BCL2L13Q9BXK5 485 aa14.43□□□□□ -0.1
SYNE1-237ENST00000539504 SAMD9LQ8IVG5 1584 aa14.43□□□□□ -0.1
SYNE1-237ENST00000539504 PDE3AQ14432 1141 aa14.42□□□□□ -0.1
SYNE1-237ENST00000539504 TRMT2AQ8IZ69 625 aaKnown RBP14.42□□□□□ -0.1
SYNE1-237ENST00000539504 EIF2AK4Q9P2K8 1649 aaKnown RBP14.42□□□□□ -0.1
SYNE1-237ENST00000539504 ASXL1Q8IXJ9 1541 aa14.4□□□□□ -0.1
SYNE1-237ENST00000539504 PIK3C2GO75747 1445 aa14.4□□□□□ -0.1
SYNE1-237ENST00000539504 WWC1Q8IX03 1113 aa14.39□□□□□ -0.11
SYNE1-237ENST00000539504 CFAP70Q5T0N1 1121 aa14.39□□□□□ -0.11
SYNE1-237ENST00000539504 USP19O94966 1318 aa14.39□□□□□ -0.11
SYNE1-237ENST00000539504 EFCAB2Q5VUJ9 269 aa14.38□□□□□ -0.11
SYNE1-237ENST00000539504 PMFBP1Q8TBY8 1022 aa14.38□□□□□ -0.11
SYNE1-237ENST00000539504 MORC1Q86VD1 984 aa14.38□□□□□ -0.11
SYNE1-237ENST00000539504 SCAF11Q99590 1463 aaKnown RBP14.38□□□□□ -0.11
SYNE1-237ENST00000539504 FAM43AQ8N2R8 423 aa14.38□□□□□ -0.11
SYNE1-237ENST00000539504 CHGAP10645 457 aaKnown RBP14.37□□□□□ -0.11
SYNE1-237ENST00000539504 GZF1Q9H116 711 aaPredicted RBP14.37□□□□□ -0.11
SYNE1-237ENST00000539504 PDZRN3Q9UPQ7 1066 aa14.36□□□□□ -0.11
SYNE1-237ENST00000539504 TNNQ9UQP3 1299 aa14.36□□□□□ -0.11
SYNE1-237ENST00000539504 L1TD1Q5T7N2 865 aaKnown RBP14.36□□□□□ -0.11
SYNE1-237ENST00000539504 SPAG9O60271 1321 aaKnown RBP14.36□□□□□ -0.11
SYNE1-237ENST00000539504 NGEFQ8N5V2 710 aa14.35□□□□□ -0.11
SYNE1-237ENST00000539504 CARD14Q9BXL6 1004 aa14.35□□□□□ -0.11
SYNE1-237ENST00000539504 LAMC1P11047 1609 aa14.35□□□□□ -0.11
SYNE1-237ENST00000539504 AFAP1Q8N556 730 aa14.34□□□□□ -0.11
SYNE1-237ENST00000539504 PCDHB15Q9Y5E8 787 aa14.34□□□□□ -0.11
SYNE1-237ENST00000539504 TCP11L2Q8N4U5 519 aa14.34□□□□□ -0.11
SYNE1-237ENST00000539504 RSPH6AQ9H0K4 717 aa14.34□□□□□ -0.11
SYNE1-237ENST00000539504 RWDD1Q9H446 243 aaPredicted RBP14.34□□□□□ -0.11
SYNE1-237ENST00000539504 RARSP54136 660 aaKnown RBP14.34□□□□□ -0.11
SYNE1-237ENST00000539504 FTSJ3Q8IY81 847 aaKnown RBP14.33□□□□□ -0.12
SYNE1-237ENST00000539504 UNC13BO14795 1591 aa14.33□□□□□ -0.12
SYNE1-237ENST00000539504 DUOX2Q9NRD8 1548 aa14.33□□□□□ -0.12
SYNE1-237ENST00000539504 RLBP1P12271 317 aa14.33□□□□□ -0.12
SYNE1-237ENST00000539504 TBC1D2Q9BYX2 928 aa14.33□□□□□ -0.12
SYNE1-237ENST00000539504 CDC42BPBQ9Y5S2 1711 aa14.33□□□□□ -0.12
SYNE1-237ENST00000539504 PREX2Q70Z35 1606 aa14.32□□□□□ -0.12
SYNE1-237ENST00000539504 NPC1L1Q9UHC9 1359 aa14.32□□□□□ -0.12
SYNE1-237ENST00000539504 SLC24A1O60721 1099 aa14.32□□□□□ -0.12
SYNE1-237ENST00000539504 MFAP1P55081 439 aaKnown RBP14.32□□□□□ -0.12
SYNE1-237ENST00000539504 RUNDC1Q96C34 613 aa14.32□□□□□ -0.12
SYNE1-237ENST00000539504 STAC3Q96MF2 364 aa14.32□□□□□ -0.12
SYNE1-237ENST00000539504 KIF3BO15066 747 aa14.31□□□□□ -0.12
SYNE1-237ENST00000539504 NINLQ9Y2I6 1382 aa14.31□□□□□ -0.12
SYNE1-237ENST00000539504 MYO5CQ9NQX4 1742 aa14.31□□□□□ -0.12
SYNE1-237ENST00000539504 ATP10AO60312 1499 aa14.31□□□□□ -0.12
SYNE1-237ENST00000539504 IQGAP3Q86VI3 1631 aa14.3□□□□□ -0.12
SYNE1-237ENST00000539504 TBC1D32Q96NH3 1257 aa14.3□□□□□ -0.12
SYNE1-237ENST00000539504 GOLGA6L3A6NEY3 463 aa14.3□□□□□ -0.12
SYNE1-237ENST00000539504 TRAK1Q9UPV9 953 aa14.3□□□□□ -0.12
SYNE1-237ENST00000539504 CFAP53Q96M91 514 aa14.3□□□□□ -0.12
SYNE1-237ENST00000539504 SYNMO15061 1565 aa14.29□□□□□ -0.12
SYNE1-237ENST00000539504 MAST1Q9Y2H9 1570 aa14.29□□□□□ -0.12
SYNE1-237ENST00000539504 ABCC2Q92887 1545 aa14.29□□□□□ -0.12
SYNE1-237ENST00000539504 ADGRF5Q8IZF2 1346 aa14.29□□□□□ -0.12
SYNE1-237ENST00000539504 TTC37Q6PGP7 1564 aa14.29□□□□□ -0.12
SYNE1-237ENST00000539504 CLASP1Q7Z460 1538 aa14.29□□□□□ -0.12
SYNE1-237ENST00000539504 KANK1Q14678 1352 aa14.29□□□□□ -0.12
SYNE1-237ENST00000539504 SLC12A5Q9H2X9 1139 aa14.29□□□□□ -0.12
SYNE1-237ENST00000539504 U2AF1L5P0DN76 240 aaPredicted RBP14.28□□□□□ -0.12
SYNE1-237ENST00000539504 U2AF1Q01081 240 aaKnown RBP eCLIP14.28□□□□□ -0.12
SYNE1-237ENST00000539504 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.28□□□□□ -0.12
SYNE1-237ENST00000539504 MTHFSP49914 203 aa14.28□□□□□ -0.12
SYNE1-237ENST00000539504 TRAPPC8Q9Y2L5 1435 aa14.27□□□□□ -0.12
SYNE1-237ENST00000539504 MYH16Q9H6N6 1097 aa14.27□□□□□ -0.13
SYNE1-237ENST00000539504 RRAGDQ9NQL2 400 aaPredicted RBP14.27□□□□□ -0.13
SYNE1-237ENST00000539504 ANTXR1Q9H6X2 564 aa14.27□□□□□ -0.13
SYNE1-237ENST00000539504 SCAPERQ9BY12 1400 aa14.26□□□□□ -0.13
SYNE1-237ENST00000539504 C22orf23Q9BZE7 217 aa14.26□□□□□ -0.13
SYNE1-237ENST00000539504 MCM4P33991 863 aa14.26□□□□□ -0.13
SYNE1-237ENST00000539504 AAMPQ13685 434 aa14.26□□□□□ -0.13
SYNE1-237ENST00000539504 ZKSCAN2Q63HK3 967 aa14.26□□□□□ -0.13
SYNE1-237ENST00000539504 POLR3AO14802 1390 aaPredicted RBP14.25□□□□□ -0.13
SYNE1-237ENST00000539504 ITPRIPQ8IWB1 547 aa14.25□□□□□ -0.13
SYNE1-237ENST00000539504 NAP1L5Q96NT1 182 aaPredicted RBP14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms