RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 STRCP1A6NGW2 1772 aa17.4■□□□□ 0.38
RTN3-209ENST00000538995 TRPM2O94759 1503 aa17.39■□□□□ 0.37
RTN3-209ENST00000538995 TOM1O60784 492 aa17.38■□□□□ 0.37
RTN3-209ENST00000538995 PPP1R15AO75807 674 aaPredicted RBP17.38■□□□□ 0.37
RTN3-209ENST00000538995 CHGAP10645 457 aaKnown RBP17.37■□□□□ 0.37
RTN3-209ENST00000538995 MYO5BQ9ULV0 1848 aa17.37■□□□□ 0.37
RTN3-209ENST00000538995 NKTRP30414 1462 aaKnown RBP17.36■□□□□ 0.37
RTN3-209ENST00000538995 NWD1Q149M9 1564 aa17.36■□□□□ 0.37
RTN3-209ENST00000538995 KCNA6P17658 529 aa17.35■□□□□ 0.37
RTN3-209ENST00000538995 TRIM52Q96A61 297 aa17.35■□□□□ 0.37
RTN3-209ENST00000538995 SLC26A8Q96RN1 970 aa17.35■□□□□ 0.37
RTN3-209ENST00000538995 DIP2AQ14689 1571 aa17.34■□□□□ 0.37
RTN3-209ENST00000538995 ACIN1Q9UKV3 1341 aaKnown RBP17.34■□□□□ 0.37
RTN3-209ENST00000538995 BCANQ96GW7 911 aa17.33■□□□□ 0.36
RTN3-209ENST00000538995 SLC4A1APQ9BWU0 796 aaKnown RBP17.32■□□□□ 0.36
RTN3-209ENST00000538995 TBX22Q9Y458 520 aa17.32■□□□□ 0.36
RTN3-209ENST00000538995 CLTCL1P53675 1640 aa17.32■□□□□ 0.36
RTN3-209ENST00000538995 ALKQ9UM73 1620 aa17.32■□□□□ 0.36
RTN3-209ENST00000538995 ADAMTS13Q76LX8 1427 aa17.3■□□□□ 0.36
RTN3-209ENST00000538995 PIK3R4Q99570 1358 aa17.3■□□□□ 0.36
RTN3-209ENST00000538995 TMEM94Q12767 1356 aa17.29■□□□□ 0.36
RTN3-209ENST00000538995 PIP4K2BP78356 416 aa17.28■□□□□ 0.36
RTN3-209ENST00000538995 SETBP1Q9Y6X0 1596 aa17.28■□□□□ 0.36
RTN3-209ENST00000538995 SCAF1Q9H7N4 1312 aaKnown RBP17.27■□□□□ 0.36
RTN3-209ENST00000538995 SETD5Q9C0A6 1442 aa17.27■□□□□ 0.35
RTN3-209ENST00000538995 ZNF326Q5BKZ1 582 aaKnown RBP17.26■□□□□ 0.35
RTN3-209ENST00000538995 NUTM2DQ5VT03 806 aaPredicted RBP17.26■□□□□ 0.35
RTN3-209ENST00000538995 NEXMIFQ5QGS0 1516 aa17.26■□□□□ 0.35
RTN3-209ENST00000538995 XIRP1Q702N8 1843 aaKnown RBP17.26■□□□□ 0.35
RTN3-209ENST00000538995 NCOA3Q9Y6Q9 1424 aa17.25■□□□□ 0.35
RTN3-209ENST00000538995 PROSER2Q86WR7 435 aaPredicted RBP17.25■□□□□ 0.35
RTN3-209ENST00000538995 CHD2O14647 1828 aaKnown RBP17.24■□□□□ 0.35
RTN3-209ENST00000538995 KIF1BO60333 1816 aa17.24■□□□□ 0.35
RTN3-209ENST00000538995 NRXN3Q9Y4C0 1643 aa17.23■□□□□ 0.35
RTN3-209ENST00000538995 RPGRIP1LQ68CZ1 1315 aa17.22■□□□□ 0.35
RTN3-209ENST00000538995 HSPA1LP34931 641 aa17.22■□□□□ 0.35
RTN3-209ENST00000538995 MPHOSPH9Q99550 1183 aa17.22■□□□□ 0.35
RTN3-209ENST00000538995 MSH6P52701 1360 aa17.22■□□□□ 0.35
RTN3-209ENST00000538995 CCDC144AA2RUR9 1427 aa17.21■□□□□ 0.35
RTN3-209ENST00000538995 FAM135BQ49AJ0 1406 aa17.2■□□□□ 0.34
RTN3-209ENST00000538995 RAB3GAP2Q9H2M9 1393 aa17.19■□□□□ 0.34
RTN3-209ENST00000538995 VGFO15240 615 aaPredicted RBP17.18■□□□□ 0.34
RTN3-209ENST00000538995 FOXD1Q16676 465 aa17.18■□□□□ 0.34
RTN3-209ENST00000538995 PTPRUQ92729 1446 aa17.18■□□□□ 0.34
RTN3-209ENST00000538995 XRN1Q8IZH2 1706 aaKnown RBP17.17■□□□□ 0.34
RTN3-209ENST00000538995 DISP3Q9P2K9 1392 aa17.16■□□□□ 0.34
RTN3-209ENST00000538995 SPATA31E1Q6ZUB1 1445 aa17.16■□□□□ 0.34
RTN3-209ENST00000538995 RBM33Q96EV2 1170 aaKnown RBP17.16■□□□□ 0.34
RTN3-209ENST00000538995 AMOTL2Q9Y2J4 779 aa17.16■□□□□ 0.34
RTN3-209ENST00000538995 METP08581 1390 aa17.15■□□□□ 0.34
RTN3-209ENST00000538995 HRCP23327 699 aa17.14■□□□□ 0.33
RTN3-209ENST00000538995 ILDR2Q71H61 639 aa17.14■□□□□ 0.33
RTN3-209ENST00000538995 DCCP43146 1447 aa17.13■□□□□ 0.33
RTN3-209ENST00000538995 PRAG1Q86YV5 1406 aa17.13■□□□□ 0.33
RTN3-209ENST00000538995 PPLO60437 1756 aa17.12■□□□□ 0.33
RTN3-209ENST00000538995 C19orf44Q9H6X5 657 aa17.12■□□□□ 0.33
RTN3-209ENST00000538995 ANKRD30BQ9BXX2 1392 aa17.12■□□□□ 0.33
RTN3-209ENST00000538995 C14orf37Q86TY3 774 aa17.11■□□□□ 0.33
RTN3-209ENST00000538995 CADPS2Q86UW7 1296 aa17.11■□□□□ 0.33
RTN3-209ENST00000538995 PTCH1Q13635 1447 aa17.11■□□□□ 0.33
RTN3-209ENST00000538995 ROBO1Q9Y6N7 1651 aa17.1■□□□□ 0.33
RTN3-209ENST00000538995 SLAIN2Q9P270 581 aa17.1■□□□□ 0.33
RTN3-209ENST00000538995 MED1Q15648 1581 aaPredicted RBP17.09■□□□□ 0.33
RTN3-209ENST00000538995 SETD1AO15047 1707 aaKnown RBP17.09■□□□□ 0.33
RTN3-209ENST00000538995 ATF3P18847 181 aa17.08■□□□□ 0.32
RTN3-209ENST00000538995 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.07■□□□□ 0.32
RTN3-209ENST00000538995 ADGRL3Q9HAR2 1447 aa17.07■□□□□ 0.32
RTN3-209ENST00000538995 IFT172Q9UG01 1749 aa17.06■□□□□ 0.32
RTN3-209ENST00000538995 ADGRF5Q8IZF2 1346 aa17.05■□□□□ 0.32
RTN3-209ENST00000538995 RGL3Q3MIN7 710 aa17.05■□□□□ 0.32
RTN3-209ENST00000538995 PIK3C2GO75747 1445 aa17.04■□□□□ 0.32
RTN3-209ENST00000538995 MYOM2P54296 1465 aa17.04■□□□□ 0.32
RTN3-209ENST00000538995 ROBO2Q9HCK4 1378 aa17.02■□□□□ 0.32
RTN3-209ENST00000538995 NRXN1Q9ULB1 1477 aa17.02■□□□□ 0.32
RTN3-209ENST00000538995 AHDC1Q5TGY3 1603 aaPredicted RBP17.01■□□□□ 0.31
RTN3-209ENST00000538995 TECPR2O15040 1411 aa17.01■□□□□ 0.31
RTN3-209ENST00000538995 MST1RQ04912 1400 aa17.01■□□□□ 0.31
RTN3-209ENST00000538995 NALCNQ8IZF0 1738 aa16.99■□□□□ 0.31
RTN3-209ENST00000538995 LRPPRCP42704 1394 aaKnown RBP16.99■□□□□ 0.31
RTN3-209ENST00000538995 PHLPP1O60346 1717 aa16.99■□□□□ 0.31
RTN3-209ENST00000538995 ASXL1Q8IXJ9 1541 aa16.98■□□□□ 0.31
RTN3-209ENST00000538995 BRINP3Q76B58 766 aa16.98■□□□□ 0.31
RTN3-209ENST00000538995 COL16A1Q07092 1604 aaPredicted RBP16.98■□□□□ 0.31
RTN3-209ENST00000538995 JCADQ9P266 1359 aa16.98■□□□□ 0.31
RTN3-209ENST00000538995 LAMC1P11047 1609 aa16.97■□□□□ 0.31
RTN3-209ENST00000538995 ABCC11Q96J66 1382 aa16.97■□□□□ 0.31
RTN3-209ENST00000538995 SOCS7O14512 581 aa16.96■□□□□ 0.31
RTN3-209ENST00000538995 STAC3Q96MF2 364 aa16.95■□□□□ 0.3
RTN3-209ENST00000538995 C14orf93Q9H972 538 aaKnown RBP16.95■□□□□ 0.3
RTN3-209ENST00000538995 KNDC1Q76NI1 1749 aa16.95■□□□□ 0.3
RTN3-209ENST00000538995 CDC42BPGQ6DT37 1551 aa16.94■□□□□ 0.3
RTN3-209ENST00000538995 YTHDC2Q9H6S0 1430 aaKnown RBP16.94■□□□□ 0.3
RTN3-209ENST00000538995 C1orf167Q5SNV9 1468 aa16.93■□□□□ 0.3
RTN3-209ENST00000538995 SIRT1Q96EB6 747 aa16.91■□□□□ 0.3
RTN3-209ENST00000538995 NHSL1Q5SYE7 1610 aa16.91■□□□□ 0.3
RTN3-209ENST00000538995 SPATA31A6Q5VVP1 1343 aa16.91■□□□□ 0.3
RTN3-209ENST00000538995 DHX57Q6P158 1386 aaKnown RBP16.9■□□□□ 0.3
RTN3-209ENST00000538995 TMEM132EQ6IEE7 984 aa16.9■□□□□ 0.3
RTN3-209ENST00000538995 STK26Q9P289 416 aa16.9■□□□□ 0.3
RTN3-209ENST00000538995 CFAP70Q5T0N1 1121 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms